Wall clock time and date at job start Mon Mar 30 2020 05:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46553 * 2 1 4 4 C 1.53038 * 109.46139 * 240.02747 * 2 1 3 5 5 H 1.09006 * 109.50394 * 179.22282 * 4 2 1 6 6 C 1.53001 * 109.50534 * 59.10953 * 4 2 1 7 7 O 1.42897 * 109.47669 * 174.99940 * 6 4 2 8 8 C 1.53117 * 109.28354 * 299.16786 * 4 2 1 9 9 C 1.53124 * 109.15537 * 302.34528 * 8 4 2 10 10 C 1.53032 * 109.27960 * 57.65429 * 9 8 4 11 11 N 1.46851 * 109.52578 * 300.81603 * 10 9 8 12 12 C 1.46896 * 111.00202 * 185.83587 * 11 10 9 13 13 C 1.53004 * 109.46794 * 52.15505 * 12 11 10 14 14 O 1.42901 * 109.46970 * 62.28601 * 13 12 11 15 15 C 1.42903 * 113.99811 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47117 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00048 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99809 * 359.72327 * 18 16 15 20 20 Si 1.86800 * 119.99714 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47068 * 179.72276 * 20 18 16 22 22 H 1.48496 * 109.47518 * 299.72736 * 20 18 16 23 23 H 1.48503 * 109.46935 * 59.72696 * 20 18 16 24 24 H 1.08997 * 109.47578 * 300.02617 * 1 2 3 25 25 H 1.09005 * 109.47257 * 60.02457 * 1 2 3 26 26 H 1.09002 * 109.47402 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46693 * 294.99847 * 6 4 2 28 28 H 1.09004 * 109.47198 * 54.99364 * 6 4 2 29 29 H 0.96694 * 113.99774 * 180.02562 * 7 6 4 30 30 H 1.08992 * 109.52045 * 62.24605 * 8 4 2 31 31 H 1.09001 * 109.52548 * 182.44538 * 8 4 2 32 32 H 1.08996 * 109.50003 * 177.59499 * 9 8 4 33 33 H 1.09000 * 109.50687 * 297.71116 * 9 8 4 34 34 H 1.08999 * 109.46248 * 180.80328 * 10 9 8 35 35 H 1.09002 * 109.46542 * 60.83727 * 10 9 8 36 36 H 1.08997 * 109.47540 * 292.15560 * 12 11 10 37 37 H 1.09002 * 109.47105 * 172.15095 * 12 11 10 38 38 H 1.08995 * 109.47138 * 302.28362 * 13 12 11 39 39 H 1.08997 * 109.46911 * 182.28000 * 13 12 11 40 40 H 1.09003 * 109.47213 * 59.99479 * 15 14 13 41 41 H 1.08999 * 109.47056 * 299.99837 * 15 14 13 42 42 H 0.96996 * 120.00561 * 0.28256 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 1 3.1298 -0.7092 -1.2577 6 6 1.5119 -0.0126 -2.4992 7 8 2.0809 -0.6138 -3.6640 8 6 1.5442 -2.1695 -1.2358 9 6 2.0268 -2.8532 0.0465 10 6 1.5173 -2.0706 1.2589 11 7 2.0192 -0.6918 1.1994 12 6 1.6650 0.0504 2.4165 13 6 2.1103 -0.7440 3.6460 14 8 3.5315 -0.8919 3.6285 15 6 4.0534 -1.6237 4.7394 16 6 5.5526 -1.7186 4.6187 17 1 6.0563 -1.2657 3.7777 18 6 6.2810 -2.3835 5.5822 19 7 5.6681 -2.9303 6.6092 20 14 8.1393 -2.5017 5.4323 21 1 8.6824 -3.2557 6.5906 22 1 8.4905 -3.2071 4.1737 23 1 8.7221 -1.1359 5.4135 24 1 -0.3634 0.5142 0.8897 25 1 -0.3634 0.5135 -0.8902 26 1 -0.3634 -1.0277 0.0005 27 1 0.4264 -0.1035 -2.5369 28 1 1.7872 1.0415 -2.4630 29 1 1.7901 -0.2138 -4.4950 30 1 0.4548 -2.1820 -1.2674 31 1 1.9409 -2.6988 -2.1022 32 1 1.6413 -3.8721 0.0829 33 1 3.1165 -2.8751 0.0593 34 1 1.8711 -2.5467 2.1733 35 1 0.4273 -2.0609 1.2530 36 1 0.5856 0.1982 2.4508 37 1 2.1644 1.0193 2.4095 38 1 1.6423 -1.7283 3.6316 39 1 1.8115 -0.2127 4.5496 40 1 3.6257 -2.6263 4.7473 41 1 3.7948 -1.1111 5.6659 42 1 4.7031 -2.8694 6.6869 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412094022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:50 Heat of formation + Delta-G solvation = -104.387683 kcal Electronic energy + Delta-G solvation = -20225.814483 eV Core-core repulsion = 17205.498876 eV Total energy + Delta-G solvation = -3020.315607 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03175 -37.26680 -36.43991 -33.80761 -32.76159 -32.25003 -29.22649 -27.49709 -26.20015 -25.75527 -23.29777 -22.43185 -22.29612 -20.43798 -18.45298 -17.59479 -16.91836 -16.49581 -15.68444 -15.41585 -14.74035 -14.65561 -14.56722 -14.09088 -13.68728 -13.41495 -13.15462 -13.01809 -12.70258 -12.58985 -12.20918 -12.00253 -11.71322 -11.44416 -11.25804 -11.09220 -10.94309 -10.65109 -10.42451 -10.36498 -10.28408 -10.05607 -9.97413 -9.88395 -8.77068 -8.57649 -8.17778 -7.98431 -6.41207 -4.08866 3.47196 3.50188 3.68785 3.77822 4.26160 4.48864 4.64402 4.74549 4.87243 4.94746 5.05365 5.11425 5.19969 5.28984 5.36617 5.36681 5.47562 5.49679 5.55574 5.62464 5.63576 5.72098 5.82907 5.88905 5.95222 6.02797 6.10629 6.17632 6.24780 6.26478 6.40549 6.55050 6.80706 7.17949 7.30323 7.32021 7.44801 7.97275 8.25112 8.71715 8.87809 9.61588 10.99086 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.004454 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.866764 B = 6284.401695 C = 6785.817580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.089 3.911 3 H 0.081 0.919 4 C -0.079 4.079 5 H 0.088 0.912 6 C 0.081 3.919 7 O -0.571 6.571 8 C -0.109 4.109 9 C -0.117 4.117 10 C 0.049 3.951 11 N -0.514 5.514 12 C 0.061 3.939 13 C 0.058 3.942 14 O -0.369 6.369 15 C 0.185 3.815 16 C -0.592 4.592 17 H 0.061 0.939 18 C 0.016 3.984 19 N -0.913 5.913 20 Si 1.078 2.922 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.286 1.286 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.376 0.624 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.039 0.961 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.183 5.434 -16.611 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.020 4.020 3 H 0.099 0.901 4 C -0.098 4.098 5 H 0.106 0.894 6 C 0.003 3.997 7 O -0.376 6.376 8 C -0.147 4.147 9 C -0.155 4.155 10 C -0.079 4.079 11 N -0.238 5.238 12 C -0.067 4.067 13 C -0.020 4.020 14 O -0.288 6.288 15 C 0.110 3.890 16 C -0.630 4.630 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.550 5.550 20 Si 0.906 3.094 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.222 0.778 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.010 0.990 41 H 0.009 0.991 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.891 4.513 -15.563 19.524 hybrid contribution -2.917 0.970 -0.781 3.172 sum -13.807 5.484 -16.344 22.087 Atomic orbital electron populations 1.22611 0.98199 1.02526 1.01925 1.21562 0.92152 0.97977 0.90340 0.90089 1.21119 1.02155 0.95199 0.91306 0.89389 1.22268 0.96200 0.95632 0.85586 1.86504 1.72536 1.62370 1.16165 1.21572 0.99848 0.95067 0.98179 1.21578 1.02456 0.97894 0.93577 1.22205 0.96460 0.89409 0.99809 1.61969 1.59154 1.01738 1.00896 1.22152 0.97339 0.98091 0.89095 1.22405 0.86096 0.97868 0.95614 1.88012 1.16592 1.76226 1.47947 1.20264 0.95327 0.89375 0.84009 1.21902 0.90634 1.38741 1.11696 0.92096 1.25921 1.07328 0.93096 0.92320 1.70798 1.11504 1.42932 1.29758 0.83412 0.73458 0.76548 0.76016 1.20711 1.21196 1.21237 0.92460 0.92219 0.91726 0.93685 0.93752 0.77810 0.92615 0.91423 0.91819 0.90611 0.89818 0.95259 0.94130 0.90129 0.94371 0.94337 0.99021 0.99069 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 7.81 37.16 0.29 -1.66 16 2 C 0.09 1.09 2.47 -67.72 -0.17 0.92 16 3 H 0.08 0.98 8.12 -51.93 -0.42 0.55 16 4 C -0.08 -0.95 2.37 -90.54 -0.21 -1.17 16 5 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 6 C 0.08 0.77 5.90 37.16 0.22 0.99 16 7 O -0.57 -5.70 13.25 -35.23 -0.47 -6.17 16 8 C -0.11 -1.31 4.85 -26.61 -0.13 -1.44 16 9 C -0.12 -1.61 6.09 -26.65 -0.16 -1.77 16 10 C 0.05 0.72 4.75 -3.83 -0.02 0.70 16 11 N -0.51 -7.96 4.62 -226.69 -1.05 -9.01 16 12 C 0.06 0.94 5.33 -3.82 -0.02 0.92 16 13 C 0.06 1.10 5.57 37.16 0.21 1.31 16 14 O -0.37 -9.21 10.23 -35.23 -0.36 -9.57 16 15 C 0.19 5.18 5.00 36.00 0.18 5.36 16 16 C -0.59 -18.09 9.43 -34.44 -0.32 -18.41 16 17 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 18 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 19 N -0.91 -28.54 13.65 55.43 0.76 -27.78 16 20 Si 1.08 26.09 29.90 -169.99 -5.08 21.01 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.06 0.57 6.47 -51.93 -0.34 0.24 16 25 H 0.06 0.50 6.53 -51.93 -0.34 0.16 16 26 H 0.06 0.67 4.80 -51.93 -0.25 0.43 16 27 H 0.04 0.37 6.70 -51.93 -0.35 0.02 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.38 1.93 9.12 45.56 0.42 2.34 16 30 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 31 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.44 5.79 -51.93 -0.30 1.14 16 35 H 0.03 0.39 6.19 -51.93 -0.32 0.07 16 36 H 0.04 0.52 6.30 -51.93 -0.33 0.20 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.04 0.70 6.05 -51.93 -0.31 0.39 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H -0.01 -0.22 8.01 -51.93 -0.42 -0.64 16 41 H -0.01 -0.24 8.00 -51.93 -0.42 -0.65 16 42 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -34.09 318.43 -7.80 -41.89 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.16 Total: -1.30 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.24 Total: -13.87 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.29 Total: -36.79 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.83 Total: -15.74 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.08 Total: 21.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.09 -7.80 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412094022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.494 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds