Wall clock time and date at job start Mon Mar 30 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46069 * 2 1 4 4 C 1.53039 * 109.45378 * 119.97438 * 2 1 3 5 5 H 1.08999 * 109.50071 * 180.77109 * 4 2 1 6 6 C 1.53002 * 109.50309 * 300.88807 * 4 2 1 7 7 O 1.42897 * 109.46978 * 184.99943 * 6 4 2 8 8 C 1.53116 * 109.27684 * 60.83061 * 4 2 1 9 9 C 1.53118 * 109.16201 * 57.65369 * 8 4 2 10 10 C 1.53038 * 109.27963 * 302.34734 * 9 8 4 11 11 N 1.46844 * 109.46096 * 240.02526 * 2 1 3 12 12 C 1.46900 * 111.00081 * 65.82908 * 11 2 1 13 13 C 1.53000 * 109.46583 * 75.62170 * 12 11 2 14 14 O 1.42900 * 109.47790 * 64.89469 * 13 12 11 15 15 C 1.42895 * 114.00459 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47289 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99608 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00075 * 179.72046 * 16 15 14 19 19 N 1.31517 * 120.00291 * 180.27229 * 18 16 15 20 20 Si 1.86801 * 120.00204 * 0.27553 * 18 16 15 21 21 H 1.48504 * 109.47196 * 89.99672 * 20 18 16 22 22 H 1.48491 * 109.47355 * 210.00024 * 20 18 16 23 23 H 1.48502 * 109.46757 * 330.00022 * 20 18 16 24 24 H 1.09000 * 109.46874 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47101 * 299.97791 * 1 2 3 26 26 H 1.08997 * 109.47372 * 59.97741 * 1 2 3 27 27 H 1.08996 * 109.47434 * 305.00458 * 6 4 2 28 28 H 1.09002 * 109.47036 * 65.00273 * 6 4 2 29 29 H 0.96702 * 114.00202 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.51932 * 177.55635 * 8 4 2 31 31 H 1.08992 * 109.52405 * 297.74658 * 8 4 2 32 32 H 1.09002 * 109.50385 * 62.28386 * 9 8 4 33 33 H 1.08996 * 109.50691 * 182.36098 * 9 8 4 34 34 H 1.09003 * 109.45714 * 299.16045 * 10 9 8 35 35 H 1.08997 * 109.46357 * 179.19596 * 10 9 8 36 36 H 1.08996 * 109.47393 * 315.61954 * 12 11 2 37 37 H 1.09001 * 109.47000 * 195.61252 * 12 11 2 38 38 H 1.08997 * 109.47557 * 304.88578 * 13 12 11 39 39 H 1.09009 * 109.46707 * 184.89278 * 13 12 11 40 40 H 1.08990 * 109.47150 * 59.99198 * 15 14 13 41 41 H 1.09002 * 109.46999 * 299.99370 * 15 14 13 42 42 H 0.96999 * 120.00167 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7210 1.2500 5 1 3.1297 -0.7094 1.2577 6 6 1.5118 -0.0126 2.4992 7 8 2.0806 -0.6140 3.6640 8 6 1.5439 -2.1695 1.2356 9 6 2.0265 -2.8532 -0.0467 10 6 1.5172 -2.0704 -1.2591 11 7 2.0193 -0.6917 -1.1994 12 6 1.6652 0.0506 -2.4165 13 6 2.5834 1.2664 -2.5575 14 8 3.9283 0.8271 -2.7578 15 6 4.8719 1.8905 -2.9016 16 6 6.2498 1.3154 -3.1059 17 1 6.3908 0.2447 -3.1238 18 6 7.3295 2.1558 -3.2753 19 7 8.5312 1.6539 -3.4590 20 14 7.0857 4.0076 -3.2438 21 1 7.2345 4.5029 -1.8518 22 1 8.1020 4.6555 -4.1111 23 1 5.7264 4.3364 -3.7436 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5135 0.8902 26 1 -0.3634 0.5142 -0.8897 27 1 1.7871 1.0413 2.4630 28 1 0.4262 -0.1034 2.5368 29 1 1.7893 -0.2146 4.4951 30 1 1.9404 -2.6989 2.1021 31 1 0.4545 -2.1819 1.2672 32 1 3.1162 -2.8753 -0.0594 33 1 1.6415 -3.8723 -0.0828 34 1 0.4273 -2.0606 -1.2532 35 1 1.8711 -2.5465 -2.1735 36 1 0.6294 0.3832 -2.3509 37 1 1.7846 -0.5973 -3.2849 38 1 2.5294 1.8696 -1.6512 39 1 2.2655 1.8646 -3.4115 40 1 4.8652 2.5062 -2.0023 41 1 4.6018 2.5020 -3.7625 42 1 9.2907 2.2453 -3.5786 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412094023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:52 Heat of formation + Delta-G solvation = -97.883351 kcal Electronic energy + Delta-G solvation = -20278.964607 eV Core-core repulsion = 17258.931049 eV Total energy + Delta-G solvation = -3020.033558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00613 -37.13699 -36.45561 -33.71610 -32.49037 -32.27061 -29.44593 -27.83851 -27.04978 -25.53479 -23.60353 -21.82435 -21.68299 -20.86521 -18.42294 -17.55422 -16.77954 -16.27808 -15.77397 -15.24854 -15.16159 -14.63172 -14.34610 -14.29352 -13.94332 -13.38093 -13.09223 -12.98026 -12.75086 -12.51419 -12.20540 -12.01897 -11.94283 -11.51664 -11.32114 -11.01414 -10.89472 -10.72935 -10.61929 -10.37575 -10.24231 -10.13806 -9.89839 -9.77888 -9.08860 -8.74938 -8.36538 -7.98675 -6.04888 -4.02820 3.28472 3.35000 3.36647 3.80878 4.28902 4.40906 4.66275 4.71805 4.82133 4.97415 5.08310 5.13931 5.23589 5.26438 5.30888 5.37676 5.45060 5.50010 5.54805 5.61315 5.69555 5.72603 5.83484 5.90749 5.96266 5.99358 6.04752 6.11904 6.24727 6.26546 6.37878 6.53322 6.68237 7.08032 7.30385 7.31240 7.51236 7.67981 8.14230 8.77103 9.08821 9.55166 11.08401 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.004914 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.836964 B = 5696.438827 C = 6012.919441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.087 3.913 3 H 0.084 0.916 4 C -0.080 4.080 5 H 0.090 0.910 6 C 0.081 3.919 7 O -0.571 6.571 8 C -0.109 4.109 9 C -0.118 4.118 10 C 0.054 3.946 11 N -0.515 5.515 12 C 0.057 3.943 13 C 0.065 3.935 14 O -0.364 6.364 15 C 0.168 3.832 16 C -0.513 4.513 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.875 3.125 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.376 0.624 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.038 0.962 40 H -0.005 1.005 41 H -0.001 1.001 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.771 -3.485 10.004 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.021 4.021 3 H 0.102 0.898 4 C -0.098 4.098 5 H 0.109 0.891 6 C 0.003 3.997 7 O -0.376 6.376 8 C -0.146 4.146 9 C -0.156 4.156 10 C -0.073 4.073 11 N -0.238 5.238 12 C -0.070 4.070 13 C -0.013 4.013 14 O -0.282 6.282 15 C 0.093 3.907 16 C -0.551 4.551 17 H 0.101 0.899 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.702 3.298 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.192 1.192 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.222 0.778 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.013 0.987 41 H 0.017 0.983 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.703 -4.032 9.512 21.367 hybrid contribution -1.242 1.842 0.343 2.248 sum -19.945 -2.191 9.855 22.354 Atomic orbital electron populations 1.22613 0.98252 1.02378 1.01998 1.21588 0.91933 0.98438 0.90181 0.89807 1.21118 1.02439 0.94962 0.91329 0.89138 1.22265 0.96038 0.95825 0.85584 1.86500 1.72565 1.62335 1.16152 1.21559 0.99804 0.95218 0.98060 1.21591 1.02413 0.97764 0.93829 1.22116 0.96755 0.89290 0.99171 1.61915 1.59272 1.01473 1.01155 1.22179 0.95784 0.96178 0.92868 1.22305 0.85961 0.94805 0.98253 1.88006 1.14054 1.33212 1.92961 1.20567 0.89250 0.87118 0.93808 1.20906 0.88634 0.96417 1.49154 0.89923 1.24764 0.94882 0.98546 0.94828 1.69880 0.98952 1.35239 1.49536 0.86864 0.78342 0.86097 0.78506 1.20008 1.20862 1.19199 0.91800 0.92159 0.92421 0.93655 0.93766 0.77820 0.91402 0.92628 0.90629 0.91873 0.95129 0.90707 0.93632 0.90129 0.94681 0.94383 0.98691 0.98349 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 7.85 37.16 0.29 -1.65 16 2 C 0.09 1.12 2.38 -67.72 -0.16 0.96 16 3 H 0.08 1.17 6.64 -51.93 -0.34 0.82 16 4 C -0.08 -1.01 2.37 -90.54 -0.21 -1.22 16 5 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 6 C 0.08 0.84 5.90 37.16 0.22 1.06 16 7 O -0.57 -6.18 13.25 -35.23 -0.47 -6.65 16 8 C -0.11 -1.26 4.85 -26.61 -0.13 -1.39 16 9 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 10 C 0.05 0.69 5.13 -3.83 -0.02 0.67 16 11 N -0.51 -7.67 4.48 -226.68 -1.02 -8.68 16 12 C 0.06 0.84 5.27 -3.82 -0.02 0.82 16 13 C 0.07 1.17 6.13 37.16 0.23 1.39 16 14 O -0.36 -8.76 10.27 -35.23 -0.36 -9.12 16 15 C 0.17 4.41 4.76 36.01 0.17 4.58 16 16 C -0.51 -15.70 9.99 -34.44 -0.34 -16.04 16 17 H 0.08 2.78 8.06 -52.48 -0.42 2.35 16 18 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 19 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 20 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 24 H 0.06 0.63 4.80 -51.93 -0.25 0.38 16 25 H 0.06 0.52 6.53 -51.93 -0.34 0.18 16 26 H 0.06 0.57 6.28 -51.93 -0.33 0.24 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.39 6.70 -51.93 -0.35 0.04 16 29 H 0.38 2.26 9.12 45.56 0.42 2.67 16 30 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 31 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.34 6.19 -51.93 -0.32 0.02 16 35 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 36 H 0.05 0.55 5.93 -51.93 -0.31 0.24 16 37 H 0.08 1.20 7.80 -51.93 -0.40 0.79 16 38 H 0.04 0.61 6.69 -51.93 -0.35 0.26 16 39 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.00 -0.12 7.58 -51.93 -0.39 -0.51 16 41 H 0.00 -0.03 7.19 -51.93 -0.37 -0.40 16 42 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 317.25 15.07 4.78 4.78 Total: -1.00 -33.96 317.25 -7.40 -41.36 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.21 Total: -1.04 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.24 Total: -10.37 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.24 Total: -36.18 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.83 Total: -15.76 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.96 -7.40 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412094023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.522 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds