Wall clock time and date at job start Mon Mar 30 2020 04:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00378 * 2 1 4 4 C 1.53001 * 109.47512 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.46968 * 65.00201 * 4 3 2 6 6 C 1.36941 * 120.00331 * 84.50314 * 5 4 3 7 7 H 1.08004 * 119.99817 * 37.13113 * 6 5 4 8 8 C 1.38815 * 120.00086 * 217.13961 * 6 5 4 9 9 N 1.31616 * 120.00060 * 22.09564 * 8 6 5 10 10 Si 1.86797 * 119.99907 * 202.09726 * 8 6 5 11 11 H 1.48503 * 109.46990 * 89.99546 * 10 8 6 12 12 H 1.48496 * 109.47270 * 209.99785 * 10 8 6 13 13 H 1.48502 * 109.46982 * 330.00052 * 10 8 6 14 14 C 1.46506 * 120.00048 * 264.22481 * 5 4 3 15 15 C 1.52998 * 109.46983 * 270.27550 * 14 5 4 16 16 H 1.08998 * 109.54555 * 305.18058 * 15 14 5 17 17 C 1.53188 * 109.54186 * 65.44300 * 15 14 5 18 18 C 1.53091 * 109.16333 * 176.84686 * 17 15 14 19 19 O 1.42902 * 109.41329 * 302.39295 * 18 17 15 20 20 C 1.42908 * 114.10100 * 61.15933 * 19 18 17 21 21 H 1.08997 * 109.49069 * 178.85394 * 20 19 18 22 22 C 1.52997 * 109.47839 * 58.82322 * 20 19 18 23 23 C 1.53093 * 109.40985 * 298.84089 * 20 19 18 24 24 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47103 * 299.99746 * 1 2 3 26 26 H 1.08998 * 109.46851 * 59.99810 * 1 2 3 27 27 H 1.09001 * 109.46562 * 59.99894 * 3 2 1 28 28 H 1.09009 * 109.47012 * 300.00595 * 3 2 1 29 29 H 1.09002 * 109.46907 * 304.99890 * 4 3 2 30 30 H 1.09003 * 109.46504 * 185.00190 * 4 3 2 31 31 H 0.97004 * 120.00190 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.46699 * 30.27428 * 14 5 4 33 33 H 1.08997 * 109.46932 * 150.27745 * 14 5 4 34 34 H 1.09000 * 109.52013 * 296.74887 * 17 15 14 35 35 H 1.08999 * 109.51970 * 56.94329 * 17 15 14 36 36 H 1.08997 * 109.48076 * 182.41131 * 18 17 15 37 37 H 1.09002 * 109.48160 * 62.37366 * 18 17 15 38 38 H 1.08997 * 109.47103 * 300.05618 * 22 20 19 39 39 H 1.08994 * 109.47193 * 60.06475 * 22 20 19 40 40 H 1.09003 * 109.46876 * 180.02562 * 22 20 19 41 41 H 1.09002 * 109.52611 * 297.69902 * 23 20 19 42 42 H 1.09005 * 109.51503 * 177.51390 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1576 1.3337 -2.3709 7 1 4.5663 2.3294 -2.2808 8 6 3.8167 0.8338 -3.6203 9 7 2.9474 -0.1492 -3.7209 10 14 4.5918 1.5564 -5.1586 11 1 5.8395 0.8173 -5.4782 12 1 3.6418 1.4383 -6.2938 13 1 4.9103 2.9882 -4.9266 14 6 4.2271 -0.8778 -1.3070 15 6 5.6882 -1.1547 -0.9475 16 1 6.3405 -0.5731 -1.5990 17 6 5.9395 -0.7648 0.5124 18 6 7.3815 -1.1181 0.8859 19 8 7.6000 -2.5135 0.6690 20 6 7.4258 -2.9275 -0.6877 21 1 7.6295 -3.9950 -0.7711 22 6 8.3917 -2.1520 -1.5857 23 6 5.9856 -2.6468 -1.1243 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8515 0.5682 0.8410 30 1 3.9785 2.1765 0.0890 31 1 2.7089 -0.4983 -4.5940 32 1 3.5755 -1.3871 -0.5971 33 1 4.0248 -1.2442 -2.3134 34 1 5.7837 0.3070 0.6351 35 1 5.2517 -1.3102 1.1586 36 1 7.5531 -0.8822 1.9361 37 1 8.0690 -0.5419 0.2667 38 1 8.1881 -1.0845 -1.5018 39 1 9.4170 -2.3520 -1.2747 40 1 8.2584 -2.4675 -2.6205 41 1 5.2987 -3.2303 -0.5112 42 1 5.8627 -2.9211 -2.1721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453593205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:08 Heat of formation + Delta-G solvation = -83.387095 kcal Electronic energy + Delta-G solvation = -21055.951221 eV Core-core repulsion = 18036.546267 eV Total energy + Delta-G solvation = -3019.404953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.35821 -37.20362 -35.62244 -33.05449 -31.83241 -31.25962 -28.78305 -27.74213 -25.74648 -25.42630 -23.36843 -22.96528 -21.39353 -19.96594 -18.63941 -16.69901 -15.86170 -15.55683 -15.43090 -15.23416 -14.75943 -14.24228 -14.22247 -13.95884 -13.51017 -13.24801 -12.80018 -12.53375 -12.23600 -11.92157 -11.56440 -11.42934 -11.29295 -11.02931 -10.93172 -10.75416 -10.74184 -10.55316 -10.30192 -10.16762 -10.07832 -9.83558 -9.44456 -9.30275 -8.89947 -8.78500 -8.41409 -6.47143 -5.70323 -3.28703 3.36735 3.44949 3.45439 4.22744 4.50451 4.68591 5.18813 5.29673 5.37309 5.42965 5.45185 5.59448 5.66303 5.76503 5.80175 5.90617 5.93686 5.98314 6.04122 6.13582 6.17236 6.24247 6.30098 6.39032 6.39919 6.46418 6.49003 6.64429 6.67012 6.82563 6.90578 6.94848 7.08277 7.42148 7.61518 7.81901 7.89489 8.06025 8.58222 9.26938 9.89624 10.50219 11.27500 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.008902 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.382725 B = 3144.619118 C = 4395.729148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.372 6.372 3 C 0.046 3.954 4 C 0.144 3.856 5 N -0.573 5.573 6 C -0.262 4.262 7 H 0.057 0.943 8 C 0.016 3.984 9 N -0.877 5.877 10 Si 0.889 3.111 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.161 3.839 15 C -0.107 4.107 16 H 0.069 0.931 17 C -0.141 4.141 18 C 0.057 3.943 19 O -0.386 6.386 20 C 0.088 3.912 21 H 0.091 0.909 22 C -0.184 4.184 23 C -0.140 4.140 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.035 0.965 27 H 0.018 0.982 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.252 0.748 32 H 0.030 0.970 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 -2.196 6.913 8.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.290 6.290 3 C -0.034 4.034 4 C 0.017 3.983 5 N -0.293 5.293 6 C -0.392 4.392 7 H 0.075 0.925 8 C -0.185 4.185 9 N -0.519 5.519 10 Si 0.719 3.281 11 H -0.214 1.214 12 H -0.219 1.219 13 H -0.204 1.204 14 C 0.035 3.965 15 C -0.128 4.128 16 H 0.087 0.913 17 C -0.179 4.179 18 C -0.019 4.019 19 O -0.305 6.305 20 C 0.030 3.970 21 H 0.109 0.891 22 C -0.242 4.242 23 C -0.179 4.179 24 H 0.091 0.909 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.940 -2.558 6.907 8.354 hybrid contribution -0.093 0.846 -1.195 1.467 sum 3.847 -1.712 5.712 7.097 Atomic orbital electron populations 1.22549 0.83353 1.01369 0.98624 1.87941 1.17620 1.28426 1.95024 1.23365 0.98133 0.84089 0.97771 1.21091 0.89463 0.97085 0.90638 1.43681 1.75604 1.03948 1.06064 1.19002 1.35983 0.99531 0.84718 0.92497 1.25144 0.96469 0.98850 0.98068 1.70067 1.30192 1.28724 1.22877 0.86513 0.79020 0.79062 0.83491 1.21388 1.21920 1.20414 1.20853 0.89007 0.84344 1.02331 1.21875 1.02667 0.93312 0.94920 0.91292 1.22224 0.95607 1.01956 0.98076 1.22610 0.96746 0.82309 1.00272 1.87885 1.90742 1.24827 1.27079 1.22136 0.94761 0.98166 0.81896 0.89083 1.22432 0.99220 1.02254 1.00269 1.22160 0.95637 0.98594 1.01495 0.90851 0.95754 0.94681 0.96366 0.93263 0.93353 0.93092 0.93815 0.95144 0.89334 0.90718 0.92265 0.90083 0.93431 0.91365 0.92752 0.91735 0.91813 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 11.01 101.05 1.11 1.78 16 2 O -0.37 -8.05 10.20 -35.23 -0.36 -8.41 16 3 C 0.05 0.94 6.25 37.16 0.23 1.17 16 4 C 0.14 3.00 5.00 -4.05 -0.02 2.98 16 5 N -0.57 -13.78 2.23 -173.24 -0.39 -14.17 16 6 C -0.26 -6.94 9.45 -15.06 -0.14 -7.08 16 7 H 0.06 1.51 7.92 -52.48 -0.42 1.10 16 8 C 0.02 0.43 4.94 -17.43 -0.09 0.34 16 9 N -0.88 -24.94 11.51 55.49 0.64 -24.30 16 10 Si 0.89 21.28 29.61 -169.99 -5.03 16.25 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.16 3.74 4.72 -4.04 -0.02 3.72 16 15 C -0.11 -2.08 2.17 -90.43 -0.20 -2.27 16 16 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 17 C -0.14 -2.44 4.26 -26.59 -0.11 -2.55 16 18 C 0.06 0.88 6.52 37.20 0.24 1.12 16 19 O -0.39 -6.35 10.60 -35.23 -0.37 -6.73 16 20 C 0.09 1.35 3.91 -26.68 -0.10 1.24 16 21 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 22 C -0.18 -2.65 8.65 37.16 0.32 -2.33 16 23 C -0.14 -2.42 4.92 -26.59 -0.13 -2.55 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 1.13 8.14 -51.92 -0.42 0.70 16 29 H 0.05 0.94 6.26 -51.93 -0.33 0.62 16 30 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 33 H 0.09 2.36 5.53 -51.93 -0.29 2.07 16 34 H 0.07 1.32 6.27 -51.93 -0.33 1.00 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.72 6.34 -51.93 -0.33 0.39 16 38 H 0.07 1.06 4.98 -51.93 -0.26 0.81 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -29.04 322.96 -6.86 -35.90 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.31 Total: 1.04 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 1.10 Total: -4.44 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.25 Total: -38.47 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.73 Total: -15.14 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.04 -6.86 -35.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453593205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.487 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds