Wall clock time and date at job start Mon Mar 30 2020 04:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00441 * 2 1 4 4 C 1.52998 * 109.47551 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46875 * 65.00380 * 4 3 2 6 6 C 1.36941 * 119.99836 * 270.00058 * 5 4 3 7 7 H 1.08001 * 120.00211 * 145.93477 * 6 5 4 8 8 C 1.38811 * 119.99899 * 325.92980 * 6 5 4 9 9 N 1.31621 * 120.00055 * 337.41535 * 8 6 5 10 10 Si 1.86799 * 119.99933 * 157.41417 * 8 6 5 11 11 H 1.48497 * 109.47028 * 60.00157 * 10 8 6 12 12 H 1.48505 * 109.47057 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47240 * 300.00059 * 10 8 6 14 14 C 1.46500 * 120.00479 * 90.00217 * 5 4 3 15 15 C 1.52995 * 109.47148 * 95.45239 * 14 5 4 16 16 H 1.08996 * 109.54145 * 55.18691 * 15 14 5 17 17 C 1.53171 * 109.54778 * 295.00274 * 15 14 5 18 18 C 1.53098 * 109.16537 * 183.15064 * 17 15 14 19 19 O 1.42907 * 109.41178 * 57.61268 * 18 17 15 20 20 C 1.42905 * 114.09593 * 298.83861 * 19 18 17 21 21 H 1.08999 * 109.47851 * 181.13857 * 20 19 18 22 22 C 1.52998 * 109.48232 * 301.17069 * 20 19 18 23 23 C 1.53092 * 109.41382 * 61.16112 * 20 19 18 24 24 H 1.09001 * 109.47318 * 59.99585 * 1 2 3 25 25 H 1.09002 * 109.47532 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46784 * 299.99626 * 1 2 3 27 27 H 1.08999 * 109.47104 * 300.00737 * 3 2 1 28 28 H 1.09006 * 109.47035 * 60.00037 * 3 2 1 29 29 H 1.09000 * 109.47374 * 185.00000 * 4 3 2 30 30 H 1.08994 * 109.47122 * 305.00225 * 4 3 2 31 31 H 0.97005 * 119.99803 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47194 * 215.45943 * 14 5 4 33 33 H 1.09006 * 109.46435 * 335.45979 * 14 5 4 34 34 H 1.08998 * 109.52541 * 303.06064 * 17 15 14 35 35 H 1.09000 * 109.51878 * 63.18495 * 17 15 14 36 36 H 1.09003 * 109.48071 * 177.59488 * 18 17 15 37 37 H 1.08999 * 109.48020 * 297.61876 * 18 17 15 38 38 H 1.08997 * 109.47528 * 59.99930 * 22 20 19 39 39 H 1.09006 * 109.47153 * 180.02562 * 22 20 19 40 40 H 1.09001 * 109.46860 * 299.99281 * 22 20 19 41 41 H 1.09003 * 109.52339 * 182.48335 * 23 20 19 42 42 H 1.08999 * 109.52393 * 62.29271 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0966 -0.7970 -1.3370 7 1 3.8753 -1.3024 -2.2654 8 6 4.5039 -1.5274 -0.2291 9 7 5.1852 -0.9405 0.7320 10 14 4.0848 -3.3434 -0.1021 11 1 4.6822 -4.0707 -1.2507 12 1 4.6288 -3.8893 1.1673 13 1 2.6097 -3.5135 -0.1216 14 6 4.2863 1.4007 -2.4149 15 6 5.7910 1.6742 -2.4586 16 1 6.3338 0.7290 -2.4499 17 6 6.1958 2.5090 -1.2399 18 6 7.6868 2.8440 -1.3330 19 8 7.9419 3.5394 -2.5551 20 6 7.6269 2.7892 -3.7299 21 1 7.8680 3.3798 -4.6138 22 6 8.4425 1.4948 -3.7428 23 6 6.1336 2.4519 -3.7331 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 1.6887 1.8464 0.8900 29 1 3.9786 2.1764 0.0889 30 1 3.8514 0.5682 0.8409 31 1 5.4701 -1.4511 1.5060 32 1 3.9843 0.8838 -3.3257 33 1 3.7475 2.3451 -2.3373 34 1 5.6156 3.4315 -1.2212 35 1 6.0055 1.9405 -0.3296 36 1 7.9711 3.4740 -0.4901 37 1 8.2685 1.9225 -1.3106 38 1 8.2009 0.9043 -2.8591 39 1 8.2024 0.9230 -4.6392 40 1 9.5057 1.7353 -3.7397 41 1 5.8997 1.8423 -4.6059 42 1 5.5521 3.3733 -3.7648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453593207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:11 Heat of formation + Delta-G solvation = -80.504620 kcal Electronic energy + Delta-G solvation = -20992.850683 eV Core-core repulsion = 17973.570723 eV Total energy + Delta-G solvation = -3019.279960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.35002 -37.17582 -35.63997 -33.22078 -31.75648 -30.83410 -29.01790 -27.75726 -25.63469 -25.54823 -23.24762 -22.93943 -21.50356 -19.89002 -18.63696 -16.62768 -15.91834 -15.71153 -15.46232 -15.00475 -14.69681 -14.26521 -14.14418 -13.87232 -13.59493 -13.24440 -12.76595 -12.62341 -12.09673 -11.91340 -11.72112 -11.45247 -11.16924 -10.93358 -10.81249 -10.75166 -10.70387 -10.63760 -10.35700 -10.06800 -9.93672 -9.65292 -9.59828 -9.37322 -8.96169 -8.78016 -8.31589 -6.48777 -5.64833 -3.16130 3.47965 3.53037 3.59868 4.26067 4.62120 4.74067 5.17155 5.27993 5.40170 5.45712 5.47413 5.61839 5.71066 5.77509 5.82949 5.86047 5.89501 6.00412 6.04053 6.09792 6.13430 6.18093 6.28765 6.34119 6.40281 6.47591 6.54870 6.55802 6.67913 6.73133 6.83627 6.92221 7.10276 7.28087 7.67063 7.74918 7.93811 8.12821 8.64537 9.30894 9.96601 10.49998 11.36439 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.007104 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.154729 B = 3940.362676 C = 4623.393240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.575 5.575 6 C -0.234 4.234 7 H 0.055 0.945 8 C 0.017 3.983 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.283 1.283 14 C 0.154 3.846 15 C -0.104 4.104 16 H 0.078 0.922 17 C -0.139 4.139 18 C 0.059 3.941 19 O -0.388 6.388 20 C 0.089 3.911 21 H 0.089 0.911 22 C -0.186 4.186 23 C -0.144 4.144 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.023 0.977 29 H 0.040 0.960 30 H 0.109 0.891 31 H 0.251 0.749 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 6.922 -4.571 8.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.294 5.294 6 C -0.364 4.364 7 H 0.073 0.927 8 C -0.182 4.182 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.209 1.209 14 C 0.028 3.972 15 C -0.125 4.125 16 H 0.096 0.904 17 C -0.177 4.177 18 C -0.018 4.018 19 O -0.308 6.308 20 C 0.032 3.968 21 H 0.107 0.893 22 C -0.243 4.243 23 C -0.182 4.182 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.193 6.857 -4.428 8.165 hybrid contribution -0.690 -0.985 0.147 1.212 sum -0.498 5.873 -4.281 7.284 Atomic orbital electron populations 1.22626 0.84441 1.01388 0.98310 1.88231 1.16389 1.27702 1.94783 1.23450 0.99192 0.84054 0.96595 1.21162 0.87322 0.96821 0.93705 1.43703 1.74992 1.02627 1.08077 1.18809 1.38061 0.81607 0.97928 0.92739 1.24869 0.97256 0.97345 0.98747 1.69899 1.37142 1.35813 1.10896 0.86504 0.78640 0.85839 0.76502 1.21357 1.22058 1.20929 1.20916 0.91427 0.93382 0.91525 1.21813 1.00636 0.98057 0.91997 0.90371 1.22135 0.94805 0.99515 1.01222 1.22602 0.96612 0.96715 0.85824 1.87880 1.86389 1.42462 1.14020 1.22078 0.94213 0.92471 0.88081 0.89274 1.22443 0.99943 0.98598 1.03322 1.22234 0.95726 1.00592 0.99665 0.95380 0.90817 0.95615 0.95716 0.95929 0.94137 0.87365 0.93863 0.94444 0.94950 0.93088 0.88801 0.89979 0.93080 0.91006 0.91902 0.92699 0.91715 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.97 10.18 -35.23 -0.36 -8.32 16 3 C 0.05 0.95 6.28 37.16 0.23 1.19 16 4 C 0.14 3.12 4.84 -4.04 -0.02 3.10 16 5 N -0.57 -13.67 2.18 -173.24 -0.38 -14.05 16 6 C -0.23 -6.28 8.99 -15.06 -0.14 -6.42 16 7 H 0.05 1.50 7.93 -52.49 -0.42 1.08 16 8 C 0.02 0.45 4.96 -17.43 -0.09 0.37 16 9 N -0.89 -24.99 11.30 55.49 0.63 -24.37 16 10 Si 0.89 22.25 29.61 -169.99 -5.03 17.21 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.15 3.14 5.12 -4.04 -0.02 3.12 16 15 C -0.10 -1.94 2.14 -90.44 -0.19 -2.13 16 16 H 0.08 1.68 6.62 -51.93 -0.34 1.34 16 17 C -0.14 -2.56 4.41 -26.59 -0.12 -2.67 16 18 C 0.06 0.98 6.52 37.21 0.24 1.22 16 19 O -0.39 -6.48 10.60 -35.23 -0.37 -6.85 16 20 C 0.09 1.32 3.91 -26.68 -0.10 1.21 16 21 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 22 C -0.19 -2.65 8.65 37.16 0.32 -2.33 16 23 C -0.14 -2.23 4.93 -26.59 -0.13 -2.36 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.85 6.67 -51.93 -0.35 0.51 16 30 H 0.11 2.85 5.30 -51.93 -0.28 2.58 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 2.01 6.61 -51.93 -0.34 1.67 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.88 6.34 -51.93 -0.33 0.55 16 38 H 0.07 1.17 4.98 -51.93 -0.26 0.92 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -28.73 323.52 -6.90 -35.62 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.36 Total: -0.05 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 1.10 Total: -4.07 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.25 Total: -38.42 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.73 Total: -15.18 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.73 -6.90 -35.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453593207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.883 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds