Wall clock time and date at job start Mon Mar 30 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46948 * 55.00400 * 5 4 3 7 7 O 1.42894 * 109.47519 * 294.99951 * 5 4 3 8 8 C 1.52998 * 109.47110 * 174.99654 * 5 4 3 9 9 N 1.46902 * 109.47471 * 185.00117 * 8 5 4 10 10 C 1.46893 * 111.00134 * 180.02562 * 9 8 5 11 11 H 1.08998 * 110.43886 * 325.70116 * 10 9 8 12 12 C 1.54273 * 110.48569 * 88.24251 * 10 9 8 13 13 C 1.54093 * 106.49305 * 142.19650 * 12 10 9 14 14 C 1.54273 * 106.61959 * 0.17163 * 13 12 10 15 15 H 1.08998 * 110.59653 * 95.01356 * 14 13 12 16 16 C 1.50701 * 110.48427 * 217.59853 * 14 13 12 17 17 H 1.08001 * 119.99625 * 114.77663 * 16 14 13 18 18 C 1.37875 * 120.00515 * 294.78114 * 16 14 13 19 19 N 1.31518 * 119.99711 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00291 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47215 * 89.99618 * 20 18 16 22 22 H 1.48501 * 109.47345 * 209.99739 * 20 18 16 23 23 H 1.48496 * 109.47073 * 329.99980 * 20 18 16 24 24 C 1.54881 * 104.19804 * 336.28019 * 14 13 12 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 31 31 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 32 32 H 0.96706 * 113.99860 * 300.00355 * 7 5 4 33 33 H 1.08998 * 109.47537 * 305.00478 * 8 5 4 34 34 H 1.08998 * 109.47002 * 65.00346 * 8 5 4 35 35 H 1.00904 * 110.99797 * 303.95473 * 9 8 5 36 36 H 1.09002 * 110.02928 * 261.56875 * 12 10 9 37 37 H 1.08992 * 110.03160 * 23.00584 * 12 10 9 38 38 H 1.08997 * 110.11240 * 240.83288 * 13 12 10 39 39 H 1.08994 * 109.97111 * 119.43603 * 13 12 10 40 40 H 0.96992 * 119.99833 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.75989 * 279.62810 * 24 14 13 42 42 H 1.09000 * 110.91733 * 156.32878 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 1 3.3490 3.4420 0.8412 7 8 3.3984 3.5449 -1.2216 8 6 5.3450 3.0609 0.1263 9 7 5.7140 4.4778 0.2461 10 6 7.1693 4.6342 0.3690 11 1 7.5960 3.8007 0.9270 12 6 7.8207 4.7402 -1.0254 13 6 8.9574 5.7730 -0.8999 14 6 8.9576 6.2530 0.5662 15 1 9.6751 5.6828 1.1562 16 6 9.2689 7.7257 0.6390 17 1 8.5219 8.4184 0.9975 18 6 10.5072 8.1889 0.2478 19 7 11.4170 7.3453 -0.1885 20 14 10.8927 10.0144 0.3373 21 1 11.4691 10.3339 1.6681 22 1 11.8707 10.3664 -0.7233 23 1 9.6447 10.7942 0.1384 24 6 7.5140 5.9792 1.0558 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8332 0.9769 0.8908 31 1 3.8340 0.9766 -0.8891 32 1 3.7837 3.1464 -2.0141 33 1 5.6805 2.5220 1.0123 34 1 5.8186 2.6357 -0.7586 35 1 5.3578 5.0113 -0.5328 36 1 8.2238 3.7724 -1.3237 37 1 7.0865 5.0806 -1.7555 38 1 8.7747 6.6145 -1.5682 39 1 9.9126 5.3063 -1.1402 40 1 12.2882 7.6710 -0.4634 41 1 6.8375 6.7668 0.7239 42 1 7.4836 5.8778 2.1407 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566121617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:40 Heat of formation + Delta-G solvation = -142.967128 kcal Electronic energy + Delta-G solvation = -19235.662666 eV Core-core repulsion = 16213.674129 eV Total energy + Delta-G solvation = -3021.988538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.94861 -39.13767 -37.76146 -35.49971 -33.88429 -32.51712 -30.72705 -29.76949 -28.22576 -25.93680 -24.61400 -23.67519 -22.55650 -21.07932 -20.92015 -18.34419 -18.14597 -17.55737 -17.06149 -16.66349 -16.59204 -16.10327 -16.06681 -15.08416 -14.98024 -14.41216 -14.12178 -14.05798 -13.82427 -13.56426 -13.35022 -13.14152 -12.97529 -12.68327 -12.38341 -12.32790 -12.27680 -12.22147 -11.90249 -11.71108 -11.57412 -11.36882 -11.13870 -10.76606 -10.75389 -10.56488 -10.47505 -9.22147 -8.11852 -6.20753 1.40722 1.41205 1.51833 2.43562 2.52840 3.18833 3.36682 3.53522 3.95793 4.03699 4.06866 4.11049 4.15529 4.18028 4.28917 4.37054 4.46029 4.50295 4.51792 4.69949 4.72711 4.86160 4.87824 5.02423 5.03494 5.04989 5.13014 5.18797 5.24907 5.27264 5.44662 5.45900 5.66489 5.92952 5.99530 6.18887 6.28141 6.42238 6.53520 6.85299 6.90902 7.46471 8.97411 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.064673 B = 0.003022 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.840304 B = 9264.235159 C = 9376.173206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.407 6.407 4 C 0.035 3.965 5 C 0.118 3.882 6 H 0.094 0.906 7 O -0.569 6.569 8 C 0.035 3.965 9 N -0.683 5.683 10 C 0.096 3.904 11 H 0.080 0.920 12 C -0.139 4.139 13 C -0.087 4.087 14 C 0.037 3.963 15 H -0.001 1.001 16 C -0.530 4.530 17 H 0.051 0.949 18 C 0.009 3.991 19 N -0.922 5.922 20 Si 0.952 3.048 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.093 4.093 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.384 0.616 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.346 0.654 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.259 0.741 41 H 0.051 0.949 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.698 -16.335 -1.694 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.327 6.327 4 C -0.042 4.042 5 C 0.058 3.942 6 H 0.112 0.888 7 O -0.376 6.376 8 C -0.095 4.095 9 N -0.314 5.314 10 C -0.014 4.014 11 H 0.098 0.902 12 C -0.178 4.178 13 C -0.125 4.125 14 C 0.018 3.982 15 H 0.017 0.983 16 C -0.568 4.568 17 H 0.069 0.931 18 C -0.189 4.189 19 N -0.561 5.561 20 Si 0.778 3.222 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.131 4.131 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.165 0.835 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.116 -15.802 -0.673 23.305 hybrid contribution 1.567 0.334 -1.228 2.019 sum -15.549 -15.468 -1.901 22.015 Atomic orbital electron populations 1.21769 0.93221 1.03302 1.02522 1.22675 0.96237 0.82945 1.00915 1.87933 1.21325 1.27884 1.95589 1.23203 0.81679 0.97110 1.02210 1.21851 0.92791 0.91603 0.87947 0.88794 1.86628 1.72798 1.62020 1.16140 1.22563 0.94829 0.90047 1.02052 1.60477 1.11197 1.09626 1.50057 1.22299 0.86487 0.97741 0.94871 0.90224 1.22860 0.98303 0.98837 0.97832 1.21857 0.95782 0.96042 0.98855 1.19443 0.91954 0.94366 0.92428 0.98291 1.21557 0.98590 0.93963 1.42685 0.93086 1.25777 0.96323 1.01762 0.95042 1.70092 1.05487 1.35708 1.44834 0.85640 0.78016 0.80754 0.77779 1.20096 1.20932 1.19308 1.22373 0.96531 0.95847 0.98369 0.92537 0.92557 0.89048 0.92475 0.92475 0.91094 0.91473 0.76775 0.89460 0.93575 0.83487 0.91872 0.91812 0.95492 0.95416 0.93167 0.93060 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.41 -8.44 10.31 -144.34 -1.49 -9.92 16 4 C 0.04 0.58 5.57 71.98 0.40 0.98 16 5 C 0.12 2.41 3.49 30.59 0.11 2.51 16 6 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 7 O -0.57 -12.72 12.82 -144.34 -1.85 -14.57 16 8 C 0.03 0.73 5.21 86.30 0.45 1.18 16 9 N -0.68 -19.25 6.35 -486.03 -3.09 -22.34 16 10 C 0.10 3.22 3.17 46.00 0.15 3.37 16 11 H 0.08 2.57 7.85 -2.39 -0.02 2.55 16 12 C -0.14 -4.88 6.49 31.40 0.20 -4.68 16 13 C -0.09 -4.09 5.61 31.40 0.18 -3.91 16 14 C 0.04 1.89 2.72 -10.47 -0.03 1.86 16 15 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 16 C -0.53 -30.03 8.36 25.60 0.21 -29.81 16 17 H 0.05 2.86 7.77 -2.91 -0.02 2.84 16 18 C 0.01 0.53 5.35 84.65 0.45 0.98 16 19 N -0.92 -54.74 12.63 21.45 0.27 -54.47 16 20 Si 0.95 44.68 29.54 68.60 2.03 46.70 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 C -0.09 -3.90 5.97 31.88 0.19 -3.71 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.38 5.72 9.05 -74.05 -0.67 5.05 16 33 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.35 9.94 7.67 -89.69 -0.69 9.26 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.06 2.06 7.54 -2.39 -0.02 2.04 16 38 H 0.03 1.35 7.83 -2.39 -0.02 1.33 16 39 H 0.03 1.39 8.06 -2.39 -0.02 1.37 16 40 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.05 2.21 8.05 -2.39 -0.02 2.20 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -65.99 339.73 -0.97 -66.97 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -0.38 Total: 18.85 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 3.53 Total: -31.21 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.81 Total: -76.81 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -3.34 Total: -24.50 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -65.99 -0.97 -66.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566121617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.001 kcal (2) G-P(sol) polarization free energy of solvation -65.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds