Wall clock time and date at job start Mon Mar 30 2020 04:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47521 * 2 1 4 4 O 1.42904 * 109.46821 * 119.99723 * 2 1 3 5 5 C 1.42899 * 114.00277 * 90.00160 * 4 2 1 6 6 C 1.52995 * 109.47391 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47452 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46881 * 54.99826 * 7 6 5 9 9 O 1.42904 * 109.47100 * 295.00743 * 7 6 5 10 10 C 1.52997 * 109.47504 * 175.00186 * 7 6 5 11 11 N 1.46899 * 109.47254 * 184.99955 * 10 7 6 12 12 C 1.47477 * 111.00047 * 265.97286 * 11 10 7 13 13 C 1.53513 * 87.92932 * 221.29743 * 12 11 10 14 14 C 1.50700 * 114.34648 * 139.68711 * 13 12 11 15 15 H 1.08005 * 119.99583 * 266.07840 * 14 13 12 16 16 C 1.37877 * 120.00435 * 86.06645 * 14 13 12 17 17 N 1.31512 * 120.00079 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99673 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47230 * 89.99718 * 18 16 14 20 20 H 1.48498 * 109.47149 * 209.99489 * 18 16 14 21 21 H 1.48497 * 109.47291 * 329.99574 * 18 16 14 22 22 C 1.47481 * 111.00017 * 169.99694 * 11 10 7 23 23 H 1.08997 * 109.47688 * 300.00347 * 1 2 3 24 24 H 1.09011 * 109.46736 * 60.00384 * 1 2 3 25 25 H 1.08999 * 109.47477 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47688 * 239.99653 * 2 1 3 27 27 H 1.08998 * 109.47427 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46600 * 299.99387 * 3 2 1 29 29 H 1.09002 * 109.47254 * 59.99532 * 3 2 1 30 30 H 1.09003 * 109.46974 * 59.99986 * 5 4 2 31 31 H 1.08999 * 109.46677 * 300.00332 * 5 4 2 32 32 H 1.09003 * 109.46886 * 60.00160 * 6 5 4 33 33 H 1.08998 * 109.47228 * 300.00256 * 6 5 4 34 34 H 0.96708 * 113.99258 * 299.99573 * 9 7 6 35 35 H 1.09002 * 109.47153 * 64.99951 * 10 7 6 36 36 H 1.09001 * 109.46832 * 305.00142 * 10 7 6 37 37 H 1.09000 * 113.47846 * 336.05901 * 12 11 10 38 38 H 1.08998 * 113.47506 * 106.53321 * 12 11 10 39 39 H 1.09005 * 114.16820 * 272.37471 * 13 12 11 40 40 H 0.96998 * 119.99706 * 180.02562 * 17 16 14 41 41 H 1.09000 * 113.47744 * 253.47034 * 22 11 10 42 42 H 1.08996 * 113.47276 * 23.88258 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2000 -2.0782 0.9888 6 6 2.7089 -2.6924 2.2944 7 6 2.9157 -4.1963 2.1040 8 1 3.5786 -4.3673 1.2558 9 8 1.6554 -4.8230 1.8573 10 6 3.5415 -4.7892 3.3680 11 7 3.8502 -6.2076 3.1426 12 6 2.7473 -7.0690 3.6081 13 6 3.8069 -8.0227 4.1777 14 6 3.4600 -8.6038 5.5242 15 1 3.8129 -8.1254 6.4259 16 6 2.6921 -9.7461 5.6051 17 7 2.3890 -10.2528 6.7802 18 14 2.0821 -10.5737 4.0455 19 1 3.0808 -11.5757 3.5938 20 1 0.7893 -11.2515 4.3179 21 1 1.8916 -9.5519 2.9849 22 6 4.6661 -6.7523 4.2438 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 2.9319 -2.2467 0.1989 31 1 1.2537 -2.5433 0.7126 32 1 1.9772 -2.5238 3.0846 33 1 3.6552 -2.2271 2.5702 34 1 1.0140 -4.7115 2.5725 35 1 2.8406 -4.6973 4.1978 36 1 4.4589 -4.2509 3.6060 37 1 2.1260 -6.6035 4.3732 38 1 2.1635 -7.5033 2.7966 39 1 4.1652 -8.7674 3.4670 40 1 1.8491 -11.0566 6.8370 41 1 5.7083 -6.9183 3.9710 42 1 4.5575 -6.2017 5.1781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594716486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:18 Heat of formation + Delta-G solvation = -78.672790 kcal Electronic energy + Delta-G solvation = -19362.734482 eV Core-core repulsion = 16343.533956 eV Total energy + Delta-G solvation = -3019.200526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.44607 -38.64765 -37.07186 -33.46325 -32.66926 -31.65992 -29.88744 -27.56056 -26.75800 -24.96645 -23.99734 -21.79647 -21.56546 -21.03736 -18.60099 -17.11316 -17.03207 -16.35949 -16.10260 -15.38080 -14.99243 -14.87749 -14.55101 -14.20257 -13.70682 -13.28259 -13.20282 -12.81923 -12.67977 -12.57202 -12.50850 -11.99434 -11.78705 -11.63817 -11.52885 -11.27160 -11.04303 -10.96010 -10.70392 -10.45611 -10.21678 -9.93611 -9.73891 -9.58967 -9.41389 -9.11183 -8.54658 -8.11701 -6.10100 -4.10525 3.31563 3.37718 3.39940 3.46712 4.42406 4.43649 4.57757 4.68125 4.73104 4.88831 4.90369 5.01493 5.15597 5.22030 5.26534 5.29226 5.34326 5.44271 5.48648 5.53903 5.59251 5.67096 5.81677 5.85255 5.88909 5.91586 5.95807 6.13901 6.25383 6.34979 6.45467 6.52564 6.84834 7.01331 7.07195 7.36965 7.69501 7.77820 7.88089 8.49186 8.92470 9.53157 11.02362 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.043093 B = 0.003416 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.602366 B = 8194.325043 C = 8485.467576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.387 6.387 5 C 0.067 3.933 6 C -0.150 4.150 7 C 0.120 3.880 8 H 0.103 0.897 9 O -0.555 6.555 10 C -0.010 4.010 11 N -0.478 5.478 12 C -0.001 4.001 13 C -0.002 4.002 14 C -0.511 4.511 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.900 5.900 18 Si 0.876 3.124 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.255 1.255 22 C 0.006 3.994 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.370 0.630 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.264 0.736 41 H 0.065 0.935 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 19.499 -12.899 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.307 6.307 5 C -0.009 4.009 6 C -0.188 4.188 7 C 0.061 3.939 8 H 0.120 0.880 9 O -0.359 6.359 10 C -0.140 4.140 11 N -0.200 5.200 12 C -0.130 4.130 13 C -0.022 4.022 14 C -0.549 4.549 15 H 0.091 0.909 16 C -0.129 4.129 17 N -0.537 5.537 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.180 1.180 22 C -0.122 4.122 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.380 19.287 -13.890 23.808 hybrid contribution -1.000 -0.225 0.489 1.136 sum -2.380 19.062 -13.401 23.423 Atomic orbital electron populations 1.22301 0.96078 1.02500 1.02429 1.22050 0.93637 0.93712 0.88334 1.21864 1.01765 0.94647 1.02405 1.87902 1.86599 1.20577 1.35583 1.22462 0.99963 0.80838 0.97660 1.22252 1.02779 0.96341 0.97415 1.21806 0.85535 0.88115 0.98488 0.87966 1.86602 1.24117 1.78166 1.47053 1.23312 1.00386 0.93726 0.96574 1.68796 1.11275 1.00777 1.39145 1.24332 0.95171 0.95848 0.97658 1.20529 0.92282 0.92209 0.97155 1.20920 1.32653 1.10193 0.91138 0.90916 1.25017 0.95398 0.96522 0.95987 1.69913 1.38164 1.22023 1.23641 0.86864 0.78266 0.80166 0.84398 1.20335 1.21543 1.17951 1.23818 0.98109 0.97867 0.92435 0.91816 0.91796 0.92342 0.92353 0.92043 0.91379 0.91827 0.93471 0.92633 0.90915 0.90324 0.78307 0.93617 0.90919 0.92164 0.91551 0.92681 0.92614 0.91644 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.53 37.15 0.35 -1.05 16 2 C 0.08 0.72 3.34 -26.74 -0.09 0.63 16 3 C -0.15 -1.10 9.56 37.16 0.36 -0.75 16 4 O -0.39 -4.43 9.99 -35.23 -0.35 -4.78 16 5 C 0.07 0.73 5.64 37.15 0.21 0.94 16 6 C -0.15 -1.66 5.26 -26.74 -0.14 -1.80 16 7 C 0.12 1.58 3.21 -26.73 -0.09 1.50 16 8 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 9 O -0.55 -7.96 12.21 -35.23 -0.43 -8.39 16 10 C -0.01 -0.16 4.53 -3.83 -0.02 -0.18 16 11 N -0.48 -9.04 6.31 -244.63 -1.54 -10.58 16 12 C 0.00 -0.02 6.07 -7.54 -0.05 -0.07 16 13 C 0.00 -0.05 2.95 -91.24 -0.27 -0.32 16 14 C -0.51 -14.16 9.38 -34.44 -0.32 -14.48 16 15 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 18 Si 0.88 21.42 27.14 -169.99 -4.61 16.80 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.26 -6.00 5.68 56.52 0.32 -5.68 16 22 C 0.01 0.13 7.25 -7.54 -0.05 0.07 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 25 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 26 H 0.06 0.48 7.79 -51.93 -0.40 0.08 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.37 4.36 9.05 45.56 0.41 4.77 16 35 H 0.05 0.70 7.30 -51.93 -0.38 0.32 16 36 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.06 1.28 7.38 -51.93 -0.38 0.90 16 38 H 0.07 1.46 7.11 -51.93 -0.37 1.09 16 39 H 0.06 1.33 7.04 -51.93 -0.37 0.96 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.19 7.87 -51.93 -0.41 0.78 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -30.71 336.46 -8.28 -38.99 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.98 Total: 2.89 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.20 Total: -13.52 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.77 Total: -37.06 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.78 Total: -13.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.61 Total: 16.80 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.71 -8.28 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.680 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds