Wall clock time and date at job start Mon Mar 30 2020 05:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00157 * 2 1 4 4 H 1.08993 * 109.47028 * 30.00148 * 3 2 1 5 5 C 1.53005 * 109.46824 * 270.00131 * 3 2 1 6 6 N 1.46904 * 109.47085 * 65.00264 * 5 3 2 7 7 C 1.46900 * 111.00029 * 66.04190 * 6 5 3 8 8 C 1.46893 * 110.99732 * 190.00089 * 6 5 3 9 9 H 1.09005 * 109.46643 * 299.99444 * 8 6 5 10 10 C 1.52994 * 109.47780 * 59.99498 * 8 6 5 11 11 C 1.50695 * 109.47024 * 180.02562 * 8 6 5 12 12 H 1.08000 * 120.00264 * 359.97438 * 11 8 6 13 13 C 1.37880 * 120.00307 * 179.97438 * 11 8 6 14 14 N 1.31511 * 119.99828 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 120.00399 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47253 * 89.99326 * 15 13 11 17 17 H 1.48495 * 109.47065 * 209.99838 * 15 13 11 18 18 H 1.48501 * 109.46756 * 329.99678 * 15 13 11 19 19 C 1.52997 * 109.47298 * 150.00240 * 3 2 1 20 20 H 1.09003 * 111.01967 * 57.23055 * 19 3 2 21 21 C 1.55566 * 111.22545 * 292.92801 * 19 3 2 22 22 C 1.54383 * 102.27674 * 207.98163 * 21 19 3 23 23 O 1.43235 * 107.58532 * 21.35887 * 22 21 19 24 24 C 1.43645 * 109.97529 * 1.70714 * 23 22 21 25 25 H 1.08998 * 109.46758 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46507 * 299.99548 * 1 2 3 27 27 H 1.08997 * 109.47222 * 60.00154 * 1 2 3 28 28 H 1.08998 * 109.46763 * 184.99953 * 5 3 2 29 29 H 1.08994 * 109.47135 * 304.99776 * 5 3 2 30 30 H 1.08994 * 109.47094 * 60.00084 * 7 6 5 31 31 H 1.09002 * 109.46715 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.46889 * 299.99671 * 7 6 5 33 33 H 1.08998 * 109.47016 * 59.99838 * 10 8 6 34 34 H 1.08995 * 109.47264 * 180.02562 * 10 8 6 35 35 H 1.09005 * 109.46964 * 300.00234 * 10 8 6 36 36 H 0.97005 * 120.00248 * 180.02562 * 14 13 11 37 37 H 1.09007 * 110.84061 * 89.78331 * 21 19 3 38 38 H 1.09000 * 110.83713 * 326.18176 * 21 19 3 39 39 H 1.08995 * 109.83335 * 261.84022 * 22 21 19 40 40 H 1.09003 * 109.82742 * 140.86392 * 22 21 19 41 41 H 1.09002 * 110.30923 * 94.49115 * 24 23 22 42 42 H 1.09000 * 110.31166 * 216.56243 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 7 0.9128 1.9269 -2.0993 7 6 0.1421 3.0174 -1.4872 8 6 1.0727 2.1414 -3.5436 9 1 1.6596 3.0440 -3.7141 10 6 1.7927 0.9408 -4.1610 11 6 -0.2836 2.2969 -4.1816 12 1 -1.1753 2.2415 -3.5748 13 6 -0.3864 2.5099 -5.5399 14 7 0.6994 2.5779 -6.2788 15 14 -2.0677 2.7020 -6.3308 16 1 -2.4553 4.1355 -6.3278 17 1 -2.0164 2.2060 -7.7295 18 1 -3.0681 1.9172 -5.5637 19 6 3.3589 1.2632 0.7212 20 1 4.0284 0.5394 0.2563 21 6 3.1778 0.9664 2.2375 22 6 4.4117 1.6571 2.8569 23 8 4.8694 2.6431 1.9242 24 6 4.0075 2.6694 0.7754 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 2.7413 2.7272 -1.4439 29 1 2.8099 1.0319 -1.9816 30 1 0.6952 3.9516 -1.5831 31 1 -0.8195 3.1105 -1.9920 32 1 -0.0216 2.7988 -0.4319 33 1 1.2058 0.0383 -3.9906 34 1 1.9117 1.1003 -5.2327 35 1 2.7738 0.8288 -3.6995 36 1 0.6273 2.7282 -7.2344 37 1 3.1977 -0.1068 2.4276 38 1 2.2556 1.4107 2.6121 39 1 5.1971 0.9223 3.0335 40 1 4.1345 2.1367 3.7957 41 1 3.2411 3.4352 0.8948 42 1 4.5877 2.8535 -0.1288 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595345937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:46 Heat of formation + Delta-G solvation = -83.664053 kcal Electronic energy + Delta-G solvation = -20699.081245 eV Core-core repulsion = 17679.664282 eV Total energy + Delta-G solvation = -3019.416963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78333 -38.02357 -36.16498 -33.18685 -32.51729 -30.20476 -29.18345 -27.74976 -26.20334 -24.90185 -24.19725 -22.76715 -21.66871 -20.31298 -19.32169 -17.13129 -16.35876 -16.22821 -15.92418 -15.05078 -14.78616 -14.69667 -14.24870 -13.93458 -13.65354 -13.47920 -13.09928 -12.67358 -12.41846 -12.12039 -11.80594 -11.63380 -11.31632 -11.28937 -11.11600 -10.96415 -10.82524 -10.69828 -10.64674 -10.16318 -10.12291 -10.06093 -9.93267 -9.60244 -9.13582 -8.81310 -8.44100 -7.17259 -6.02991 -4.07779 3.28387 3.35499 3.38729 3.79969 3.96148 4.36762 4.48835 4.70215 4.94497 5.01733 5.16057 5.20401 5.28236 5.33446 5.52647 5.63216 5.68152 5.72159 5.74028 5.77560 5.92546 5.98083 6.02153 6.08744 6.18373 6.32309 6.40876 6.47761 6.70074 6.86637 6.89551 7.07049 7.14253 7.50341 7.59368 7.71097 7.80076 8.17733 8.29588 8.56157 8.98057 9.57245 11.03792 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.004967 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.037230 B = 5636.164125 C = 5921.082606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.109 3.891 4 H 0.058 0.942 5 C 0.026 3.974 6 N -0.532 5.532 7 C 0.030 3.970 8 C 0.213 3.787 9 H -0.003 1.003 10 C -0.131 4.131 11 C -0.504 4.504 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.896 3.104 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.119 4.119 20 H 0.095 0.905 21 C -0.144 4.144 22 C 0.050 3.950 23 O -0.386 6.386 24 C 0.059 3.941 25 H 0.072 0.928 26 H 0.023 0.977 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.084 0.916 30 H 0.011 0.989 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.008 0.992 36 H 0.260 0.740 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 -2.114 14.721 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.050 3.950 4 H 0.076 0.924 5 C -0.103 4.103 6 N -0.256 5.256 7 C -0.119 4.119 8 C 0.107 3.893 9 H 0.015 0.985 10 C -0.189 4.189 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.138 4.138 20 H 0.113 0.887 21 C -0.182 4.182 22 C -0.027 4.027 23 O -0.306 6.306 24 C -0.017 4.017 25 H 0.090 0.910 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.047 0.953 29 H 0.102 0.898 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.605 -2.561 14.605 15.260 hybrid contribution -0.830 0.937 -0.670 1.420 sum 2.775 -1.623 13.935 14.301 Atomic orbital electron populations 1.22927 0.80751 1.01906 1.01222 1.87771 1.20204 1.26539 1.95078 1.21967 0.92269 0.85618 0.95115 0.92379 1.22771 0.93503 0.99655 0.94391 1.62132 1.14410 1.42764 1.06335 1.22330 1.00142 0.92003 0.97387 1.19237 0.96214 0.93296 0.80549 0.98515 1.21831 0.95545 0.98338 1.03221 1.21128 0.92041 1.48568 0.92505 0.91934 1.24929 0.96642 0.95356 0.97272 1.69893 1.27333 1.49875 1.06046 0.86534 0.84310 0.78162 0.78616 1.20840 1.21260 1.19868 1.22954 0.97470 0.97890 0.95515 0.88697 1.23138 0.98269 1.02121 0.94672 1.23131 0.95966 0.90877 0.92702 1.88396 1.52649 1.58756 1.30753 1.23398 0.93500 0.95827 0.89011 0.90974 0.95889 0.90068 0.95315 0.89794 0.97000 0.90242 0.94170 0.94634 0.89771 0.97303 0.92979 0.89662 0.90776 0.91383 0.91694 0.92023 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.38 101.05 1.05 1.47 16 2 O -0.38 -6.17 10.22 -35.23 -0.36 -6.53 16 3 C 0.11 1.63 1.71 -26.73 -0.05 1.58 16 4 H 0.06 0.85 5.94 -51.93 -0.31 0.54 16 5 C 0.03 0.46 4.32 -3.82 -0.02 0.44 16 6 N -0.53 -10.96 2.86 -236.29 -0.67 -11.63 16 7 C 0.03 0.56 8.38 60.06 0.50 1.06 16 8 C 0.21 5.28 2.06 -68.87 -0.14 5.13 16 9 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 10 C -0.13 -3.21 8.77 37.15 0.33 -2.88 16 11 C -0.50 -13.47 7.88 -34.44 -0.27 -13.74 16 12 H 0.06 1.65 6.40 -52.49 -0.34 1.32 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 14 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.12 -1.52 2.87 -88.23 -0.25 -1.78 16 20 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 21 C -0.14 -1.56 6.40 -24.64 -0.16 -1.72 16 22 C 0.05 0.52 7.80 37.88 0.30 0.82 16 23 O -0.39 -5.16 11.36 -35.23 -0.40 -5.56 16 24 C 0.06 0.75 6.18 38.18 0.24 0.98 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.02 0.30 8.09 -51.93 -0.42 -0.12 16 27 H 0.08 1.42 5.67 -51.93 -0.29 1.12 16 28 H 0.03 0.50 7.04 -51.93 -0.37 0.14 16 29 H 0.08 1.60 5.83 -51.93 -0.30 1.30 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 1.60 6.10 -51.93 -0.32 1.28 16 32 H 0.04 0.64 6.04 -51.93 -0.31 0.32 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 35 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 42 H 0.09 1.12 7.96 -51.93 -0.41 0.70 16 LS Contribution 319.48 15.07 4.81 4.81 Total: -1.00 -28.65 319.48 -6.64 -35.29 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.06 Total: -0.69 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 1.43 Total: -7.10 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.05 Total: -36.24 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.76 Total: -12.09 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.65 -6.64 -35.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595345937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.374 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds