Wall clock time and date at job start Mon Mar 30 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00157 * 2 1 4 4 H 1.08993 * 109.47028 * 30.00148 * 3 2 1 5 5 C 1.53005 * 109.46824 * 270.00131 * 3 2 1 6 6 N 1.46904 * 109.47085 * 65.00264 * 5 3 2 7 7 C 1.46900 * 111.00029 * 66.04190 * 6 5 3 8 8 C 1.46893 * 110.99732 * 190.00089 * 6 5 3 9 9 H 1.09005 * 109.46643 * 299.99444 * 8 6 5 10 10 C 1.52994 * 109.47780 * 59.99498 * 8 6 5 11 11 C 1.50695 * 109.47024 * 180.02562 * 8 6 5 12 12 H 1.08000 * 120.00264 * 359.97438 * 11 8 6 13 13 C 1.37880 * 120.00307 * 179.97438 * 11 8 6 14 14 N 1.31511 * 119.99828 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 120.00399 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47253 * 89.99326 * 15 13 11 17 17 H 1.48495 * 109.47065 * 209.99838 * 15 13 11 18 18 H 1.48501 * 109.46756 * 329.99678 * 15 13 11 19 19 C 1.52997 * 109.47298 * 150.00240 * 3 2 1 20 20 H 1.09003 * 111.01967 * 57.23055 * 19 3 2 21 21 C 1.55566 * 111.22545 * 292.92801 * 19 3 2 22 22 C 1.54383 * 102.27674 * 207.98163 * 21 19 3 23 23 O 1.43235 * 107.58532 * 21.35887 * 22 21 19 24 24 C 1.43645 * 109.97529 * 1.70714 * 23 22 21 25 25 H 1.08998 * 109.46758 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46507 * 299.99548 * 1 2 3 27 27 H 1.08997 * 109.47222 * 60.00154 * 1 2 3 28 28 H 1.08998 * 109.46763 * 184.99953 * 5 3 2 29 29 H 1.08994 * 109.47135 * 304.99776 * 5 3 2 30 30 H 1.08994 * 109.47094 * 60.00084 * 7 6 5 31 31 H 1.09002 * 109.46715 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.46889 * 299.99671 * 7 6 5 33 33 H 1.08998 * 109.47016 * 59.99838 * 10 8 6 34 34 H 1.08995 * 109.47264 * 180.02562 * 10 8 6 35 35 H 1.09005 * 109.46964 * 300.00234 * 10 8 6 36 36 H 0.97005 * 120.00248 * 180.02562 * 14 13 11 37 37 H 1.09007 * 110.84061 * 89.78331 * 21 19 3 38 38 H 1.09000 * 110.83713 * 326.18176 * 21 19 3 39 39 H 1.08995 * 109.83335 * 261.84022 * 22 21 19 40 40 H 1.09003 * 109.82742 * 140.86392 * 22 21 19 41 41 H 1.09002 * 110.30923 * 94.49115 * 24 23 22 42 42 H 1.09000 * 110.31166 * 216.56243 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 7 0.9128 1.9269 -2.0993 7 6 0.1421 3.0174 -1.4872 8 6 1.0727 2.1414 -3.5436 9 1 1.6596 3.0440 -3.7141 10 6 1.7927 0.9408 -4.1610 11 6 -0.2836 2.2969 -4.1816 12 1 -1.1753 2.2415 -3.5748 13 6 -0.3864 2.5099 -5.5399 14 7 0.6994 2.5779 -6.2788 15 14 -2.0677 2.7020 -6.3308 16 1 -2.4553 4.1355 -6.3278 17 1 -2.0164 2.2060 -7.7295 18 1 -3.0681 1.9172 -5.5637 19 6 3.3589 1.2632 0.7212 20 1 4.0284 0.5394 0.2563 21 6 3.1778 0.9664 2.2375 22 6 4.4117 1.6571 2.8569 23 8 4.8694 2.6431 1.9242 24 6 4.0075 2.6694 0.7754 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 2.7413 2.7272 -1.4439 29 1 2.8099 1.0319 -1.9816 30 1 0.6952 3.9516 -1.5831 31 1 -0.8195 3.1105 -1.9920 32 1 -0.0216 2.7988 -0.4319 33 1 1.2058 0.0383 -3.9906 34 1 1.9117 1.1003 -5.2327 35 1 2.7738 0.8288 -3.6995 36 1 0.6273 2.7282 -7.2344 37 1 3.1977 -0.1068 2.4276 38 1 2.2556 1.4107 2.6121 39 1 5.1971 0.9223 3.0335 40 1 4.1345 2.1367 3.7957 41 1 3.2411 3.4352 0.8948 42 1 4.5877 2.8535 -0.1288 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595345937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:45 Heat of formation + Delta-G solvation = -101.974499 kcal Electronic energy + Delta-G solvation = -20699.875246 eV Core-core repulsion = 17679.664282 eV Total energy + Delta-G solvation = -3020.210964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85712 -39.32020 -37.72260 -34.85796 -33.89038 -31.46342 -30.84303 -29.03851 -27.62423 -26.61997 -25.77422 -23.95670 -22.82268 -21.50709 -21.03555 -18.48279 -18.07284 -17.41686 -17.09648 -16.67375 -16.18489 -15.78302 -15.69740 -15.45460 -14.97059 -14.77578 -14.44257 -14.15923 -13.89462 -13.68242 -13.15688 -12.95140 -12.86001 -12.69397 -12.59056 -12.50080 -12.23199 -12.06442 -12.01540 -11.96546 -11.80681 -11.67195 -11.41353 -10.88225 -10.51778 -10.51205 -10.35988 -8.85981 -8.10621 -6.22249 1.42321 1.43904 1.53952 2.42360 2.82216 2.86944 3.17365 3.29467 3.55839 3.93084 3.99559 4.10254 4.16482 4.27636 4.37922 4.46311 4.52770 4.58679 4.66076 4.72026 4.74085 4.80874 4.86639 4.90152 4.92503 4.98431 5.03894 5.07511 5.10788 5.22333 5.23607 5.30420 5.50601 5.72387 5.78475 5.99329 6.25052 6.34530 6.43816 6.72102 6.92447 7.46917 8.95568 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.004967 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.037230 B = 5636.164125 C = 5921.082606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.390 6.390 3 C 0.119 3.881 4 H 0.068 0.932 5 C 0.026 3.974 6 N -0.533 5.533 7 C 0.034 3.966 8 C 0.217 3.783 9 H -0.039 1.039 10 C -0.118 4.118 11 C -0.516 4.516 12 H 0.063 0.937 13 C 0.010 3.990 14 N -0.922 5.922 15 Si 0.960 3.040 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.267 1.267 19 C -0.117 4.117 20 H 0.089 0.911 21 C -0.136 4.136 22 C 0.046 3.954 23 O -0.405 6.405 24 C 0.060 3.940 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.007 0.993 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 -2.410 16.585 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.309 6.309 3 C 0.061 3.939 4 H 0.086 0.914 5 C -0.103 4.103 6 N -0.257 5.257 7 C -0.114 4.114 8 C 0.110 3.890 9 H -0.022 1.022 10 C -0.176 4.176 11 C -0.554 4.554 12 H 0.081 0.919 13 C -0.188 4.188 14 N -0.562 5.562 15 Si 0.785 3.215 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.191 1.191 19 C -0.137 4.137 20 H 0.107 0.893 21 C -0.174 4.174 22 C -0.030 4.030 23 O -0.325 6.325 24 C -0.016 4.016 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.875 -2.860 16.497 16.988 hybrid contribution -0.564 1.023 -1.201 1.676 sum 2.311 -1.837 15.296 15.578 Atomic orbital electron populations 1.22953 0.80105 1.02799 1.01001 1.87769 1.20979 1.27134 1.94980 1.21888 0.93601 0.85349 0.93079 0.91403 1.22839 0.91935 0.99488 0.96024 1.62079 1.16060 1.43368 1.04230 1.22310 0.98842 0.91316 0.98909 1.19023 0.94893 0.91687 0.83371 1.02150 1.21636 0.96458 0.97880 1.01675 1.21419 0.92826 1.48268 0.92891 0.91931 1.25719 1.00071 0.95140 0.97898 1.70028 1.29284 1.50675 1.06191 0.85530 0.80165 0.78256 0.77518 1.20268 1.21172 1.19137 1.22884 0.95975 0.97958 0.96843 0.89287 1.23113 0.98756 1.02817 0.92716 1.23313 0.96223 0.90792 0.92685 1.88378 1.53177 1.59706 1.31227 1.23369 0.93500 0.95800 0.88980 0.89717 0.93551 0.92699 0.94984 0.91343 0.97398 0.91857 0.90831 0.95210 0.92326 0.95519 0.93036 0.88784 0.90044 0.90236 0.90030 0.91688 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.38 113.37 1.18 1.94 16 2 O -0.39 -11.94 10.22 -148.98 -1.52 -13.47 16 3 C 0.12 3.35 1.71 30.59 0.05 3.40 16 4 H 0.07 1.78 5.94 -2.39 -0.01 1.77 16 5 C 0.03 0.90 4.32 86.30 0.37 1.27 16 6 N -0.53 -21.87 2.86 -901.49 -2.57 -24.45 16 7 C 0.03 1.26 8.38 127.69 1.07 2.33 16 8 C 0.22 10.99 2.06 44.17 0.09 11.08 16 9 H -0.04 -2.22 8.14 -2.38 -0.02 -2.23 16 10 C -0.12 -5.90 8.77 71.98 0.63 -5.27 16 11 C -0.52 -27.88 7.88 25.60 0.20 -27.67 16 12 H 0.06 3.32 6.40 -2.91 -0.02 3.30 16 13 C 0.01 0.56 5.30 84.66 0.45 1.01 16 14 N -0.92 -53.14 11.32 21.45 0.24 -52.89 16 15 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 C -0.12 -2.78 2.87 -9.25 -0.03 -2.81 16 20 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 21 C -0.14 -2.55 6.40 31.95 0.20 -2.35 16 22 C 0.05 0.84 7.80 72.45 0.56 1.41 16 23 O -0.40 -10.07 11.36 -148.98 -1.69 -11.76 16 24 C 0.06 1.43 6.18 72.65 0.45 1.88 16 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 1.06 8.09 -2.39 -0.02 1.04 16 27 H 0.05 1.83 5.67 -2.39 -0.01 1.82 16 28 H 0.03 1.11 7.04 -2.39 -0.02 1.09 16 29 H 0.07 2.60 5.83 -2.39 -0.01 2.59 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 2.52 6.10 -2.39 -0.01 2.50 16 32 H 0.07 2.18 6.04 -2.38 -0.01 2.16 16 33 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 35 H 0.03 1.18 6.20 -2.38 -0.01 1.17 16 36 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 37 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.08 1.42 8.01 -2.39 -0.02 1.40 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.50 8.03 -2.39 -0.02 1.48 16 42 H 0.09 2.07 7.96 -2.39 -0.02 2.05 16 Total: -1.00 -61.27 319.48 2.70 -58.58 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.98 Total: 12.50 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.24 Total: -13.79 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.33 Total: -77.34 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -3.21 Total: -25.23 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -61.27 2.70 -58.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595345937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.399 kcal (2) G-P(sol) polarization free energy of solvation -61.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds