Wall clock time and date at job start Mon Mar 30 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99733 * 2 1 4 4 H 1.08998 * 109.46971 * 26.19548 * 3 2 1 5 5 C 1.52994 * 109.47428 * 266.19306 * 3 2 1 6 6 N 1.46905 * 109.47087 * 174.60771 * 5 3 2 7 7 C 1.46908 * 110.99666 * 288.38486 * 6 5 3 8 8 C 1.46898 * 110.99844 * 164.43487 * 6 5 3 9 9 H 1.08997 * 109.47368 * 309.99673 * 8 6 5 10 10 C 1.52999 * 109.47498 * 70.00030 * 8 6 5 11 11 C 1.50704 * 109.46931 * 189.99573 * 8 6 5 12 12 H 1.08003 * 120.00173 * 0.02562 * 11 8 6 13 13 C 1.37878 * 120.00118 * 179.97438 * 11 8 6 14 14 N 1.31514 * 120.00197 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 119.99979 * 0.02562 * 13 11 8 16 16 H 1.48498 * 109.47366 * 89.99337 * 15 13 11 17 17 H 1.48495 * 109.47066 * 209.99669 * 15 13 11 18 18 H 1.48506 * 109.47127 * 329.99477 * 15 13 11 19 19 C 1.53004 * 109.47047 * 146.19463 * 3 2 1 20 20 H 1.08996 * 110.80770 * 176.37624 * 19 3 2 21 21 C 1.54818 * 110.90343 * 300.00311 * 19 3 2 22 22 C 1.54106 * 104.18396 * 139.07914 * 21 19 3 23 23 O 1.43744 * 107.42006 * 1.95115 * 22 21 19 24 24 C 1.44569 * 106.87132 * 333.67286 * 23 22 21 25 25 H 1.09003 * 109.47374 * 64.91000 * 1 2 3 26 26 H 1.09004 * 109.46777 * 184.90426 * 1 2 3 27 27 H 1.08995 * 109.47214 * 304.90765 * 1 2 3 28 28 H 1.08998 * 109.47669 * 294.60624 * 5 3 2 29 29 H 1.08998 * 109.47283 * 54.60921 * 5 3 2 30 30 H 1.08996 * 109.46804 * 66.00531 * 7 6 5 31 31 H 1.09001 * 109.46594 * 186.00292 * 7 6 5 32 32 H 1.08998 * 109.47492 * 306.00260 * 7 6 5 33 33 H 1.09010 * 109.46933 * 300.00110 * 10 8 6 34 34 H 1.08997 * 109.47103 * 59.99481 * 10 8 6 35 35 H 1.08995 * 109.47692 * 179.97438 * 10 8 6 36 36 H 0.96994 * 120.00153 * 180.02562 * 14 13 11 37 37 H 1.08992 * 110.48933 * 20.40174 * 21 19 3 38 38 H 1.09004 * 110.48781 * 257.74997 * 21 19 3 39 39 H 1.08997 * 109.87868 * 121.45703 * 22 21 19 40 40 H 1.09000 * 109.87580 * 242.45248 * 22 21 19 41 41 H 1.08999 * 110.50432 * 281.37712 * 24 23 22 42 42 H 1.09003 * 110.77364 * 158.50822 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3155 2.0124 0.4536 5 6 2.3051 1.7325 -1.4392 6 7 2.7817 3.1221 -1.4498 7 6 1.6880 4.0560 -1.1498 8 6 3.4176 3.4507 -2.7326 9 1 4.1502 2.6833 -2.9821 10 6 2.3520 3.5141 -3.8287 11 6 4.1065 4.7867 -2.6240 12 1 4.0755 5.3364 -1.6949 13 6 4.7774 5.3067 -3.7106 14 7 5.3790 6.4723 -3.6157 15 14 4.8317 4.3557 -5.3175 16 1 3.6730 4.7431 -6.1614 17 1 6.0935 4.6684 -6.0353 18 1 4.7720 2.8993 -5.0330 19 6 3.3126 1.2839 0.8026 20 1 3.8076 2.2543 0.7636 21 6 3.0519 0.8552 2.2672 22 6 4.2279 -0.0832 2.6010 23 8 5.0836 -0.1281 1.4468 24 6 4.2545 0.1610 0.2983 25 1 -0.3634 0.4358 -0.9307 26 1 -0.3633 -1.0240 0.0879 27 1 -0.3633 0.5881 0.8427 28 1 3.0714 1.0825 -1.8614 29 1 1.3953 1.6559 -2.0346 30 1 1.3518 3.9042 -0.1242 31 1 2.0420 5.0801 -1.2685 32 1 0.8589 3.8766 -1.8343 33 1 1.8536 2.5479 -3.9072 34 1 1.6193 4.2816 -3.5792 35 1 2.8237 3.7584 -4.7804 36 1 5.8507 6.8383 -4.3801 37 1 2.1044 0.3223 2.3458 38 1 3.0581 1.7237 2.9258 39 1 4.7800 0.3046 3.4570 40 1 3.8531 -1.0822 2.8236 41 1 3.6813 -0.7200 0.0097 42 1 4.8600 0.5141 -0.5365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595345938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:48 Heat of formation + Delta-G solvation = -100.363100 kcal Electronic energy + Delta-G solvation = -20843.044510 eV Core-core repulsion = 17822.903422 eV Total energy + Delta-G solvation = -3020.141088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86716 -39.23458 -38.22138 -34.87217 -33.71645 -31.91704 -30.55532 -28.61837 -27.53143 -27.19937 -26.35486 -24.26583 -22.74968 -21.50248 -20.59985 -18.69175 -17.99594 -17.32734 -17.12003 -16.95629 -16.07558 -15.90474 -15.75497 -15.58029 -15.16131 -14.68316 -14.62266 -14.33875 -14.06939 -13.73793 -13.43954 -13.25531 -13.10407 -12.79618 -12.54834 -12.50799 -12.33526 -12.21354 -11.93775 -11.80890 -11.49741 -11.44512 -11.29598 -11.11797 -10.74957 -10.58943 -10.47671 -8.94903 -8.26602 -6.28310 1.28568 1.35496 1.44450 2.32022 2.67453 3.05569 3.08498 3.42361 3.60379 3.89927 3.98970 4.16144 4.25049 4.28075 4.40482 4.45122 4.47923 4.51799 4.56529 4.60784 4.63277 4.65205 4.81129 4.83687 4.86885 4.89447 4.90928 4.94157 4.99227 5.05304 5.17154 5.24194 5.39688 5.42352 5.63706 5.97826 6.02328 6.26107 6.41266 6.68903 6.78411 7.36032 8.90138 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.006147 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.664421 B = 4553.748054 C = 5049.472326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.118 3.882 4 H 0.075 0.925 5 C 0.035 3.965 6 N -0.529 5.529 7 C 0.034 3.966 8 C 0.185 3.815 9 H 0.030 0.970 10 C -0.179 4.179 11 C -0.497 4.497 12 H 0.042 0.958 13 C 0.013 3.987 14 N -0.948 5.948 15 Si 0.945 3.055 16 H -0.269 1.269 17 H -0.300 1.300 18 H -0.251 1.251 19 C -0.109 4.109 20 H 0.088 0.912 21 C -0.142 4.142 22 C 0.044 3.956 23 O -0.408 6.408 24 C 0.059 3.941 25 H 0.039 0.961 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.376 -14.211 8.856 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C 0.059 3.941 4 H 0.093 0.907 5 C -0.093 4.093 6 N -0.253 5.253 7 C -0.114 4.114 8 C 0.077 3.923 9 H 0.048 0.952 10 C -0.238 4.238 11 C -0.536 4.536 12 H 0.061 0.939 13 C -0.184 4.184 14 N -0.589 5.589 15 Si 0.773 3.227 16 H -0.195 1.195 17 H -0.228 1.228 18 H -0.176 1.176 19 C -0.128 4.128 20 H 0.106 0.894 21 C -0.180 4.180 22 C -0.032 4.032 23 O -0.328 6.328 24 C -0.017 4.017 25 H 0.058 0.942 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.599 -14.278 9.165 20.005 hybrid contribution -0.541 0.480 -1.683 1.831 sum -11.140 -13.798 7.482 19.248 Atomic orbital electron populations 1.22992 0.79807 1.03826 1.00544 1.87856 1.21039 1.27339 1.94921 1.21737 0.94228 0.84400 0.93692 0.90738 1.22563 0.99158 0.90322 0.97293 1.61941 1.29138 1.01530 1.32722 1.22299 0.91957 0.97044 1.00062 1.19574 0.92061 0.95229 0.85449 0.95246 1.22693 1.00699 1.00678 0.99723 1.21157 1.31383 1.03013 0.98018 0.93935 1.25714 0.94948 0.95575 1.02212 1.70024 1.36843 1.19758 1.32301 0.85915 0.76324 0.80412 0.80034 1.19518 1.22803 1.17553 1.22713 0.95148 1.00071 0.94843 0.89360 1.22926 0.99587 1.00146 0.95301 1.23269 0.91437 0.99555 0.88959 1.88853 1.34594 1.92467 1.16865 1.23500 0.92276 0.97153 0.88802 0.94206 0.88112 0.92845 0.91637 0.94394 0.90810 0.93027 0.95361 0.92505 0.92421 0.94722 0.92656 0.89354 0.89821 0.89176 0.91496 0.91072 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.88 113.37 1.23 1.64 16 2 O -0.39 -9.12 8.51 -148.98 -1.27 -10.39 16 3 C 0.12 3.02 1.97 30.59 0.06 3.08 16 4 H 0.07 1.76 6.20 -2.39 -0.01 1.75 16 5 C 0.04 1.09 4.09 86.30 0.35 1.44 16 6 N -0.53 -20.11 4.12 -901.46 -3.71 -23.83 16 7 C 0.03 1.19 8.29 127.69 1.06 2.25 16 8 C 0.19 8.39 1.89 44.17 0.08 8.47 16 9 H 0.03 1.40 6.92 -2.39 -0.02 1.38 16 10 C -0.18 -7.27 7.95 71.98 0.57 -6.70 16 11 C -0.50 -27.77 8.40 25.60 0.22 -27.55 16 12 H 0.04 2.65 7.42 -2.91 -0.02 2.63 16 13 C 0.01 0.72 5.45 84.65 0.46 1.18 16 14 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 15 Si 0.95 44.87 24.37 68.60 1.67 46.54 16 16 H -0.27 -12.14 6.87 99.48 0.68 -11.46 16 17 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.25 -11.13 6.53 99.48 0.65 -10.48 16 19 C -0.11 -3.01 2.91 -9.49 -0.03 -3.03 16 20 H 0.09 2.92 7.75 -2.39 -0.02 2.90 16 21 C -0.14 -3.09 6.50 31.59 0.21 -2.88 16 22 C 0.04 1.01 7.69 72.36 0.56 1.57 16 23 O -0.41 -12.67 11.54 -148.98 -1.72 -14.39 16 24 C 0.06 1.75 6.30 72.66 0.46 2.21 16 25 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.05 0.75 7.98 -2.39 -0.02 0.73 16 28 H 0.07 2.15 6.93 -2.39 -0.02 2.13 16 29 H 0.04 1.11 7.18 -2.39 -0.02 1.09 16 30 H 0.07 2.10 6.83 -2.39 -0.02 2.09 16 31 H 0.05 2.11 6.65 -2.39 -0.02 2.10 16 32 H 0.03 0.89 6.70 -2.39 -0.02 0.87 16 33 H 0.06 1.96 7.05 -2.38 -0.02 1.94 16 34 H 0.06 2.30 6.55 -2.39 -0.02 2.28 16 35 H 0.03 1.47 3.27 -2.39 -0.01 1.46 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.09 1.69 7.33 -2.39 -0.02 1.68 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 2.01 7.14 -2.39 -0.02 2.00 16 42 H 0.08 2.47 7.96 -2.39 -0.02 2.45 16 Total: -1.00 -65.29 314.20 1.41 -63.88 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.91 Total: 15.27 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.23 Total: -18.33 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -3.42 Total: -82.60 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -2.99 Total: -24.77 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.67 Total: 46.54 kcal Total: -65.29 1.41 -63.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595345938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.480 kcal (2) G-P(sol) polarization free energy of solvation -65.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds