Wall clock time and date at job start Mon Mar 30 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42892 * 114.00051 * 2 1 4 4 C 1.52999 * 109.50570 * 305.11803 * 3 2 1 5 5 O 1.42900 * 109.47135 * 299.33531 * 4 3 2 6 6 C 1.53120 * 109.50288 * 185.03753 * 3 2 1 7 7 C 1.53120 * 109.16286 * 297.67722 * 6 3 2 8 8 C 1.53039 * 109.27813 * 302.34495 * 7 6 3 9 9 N 1.46847 * 109.52262 * 59.17622 * 8 7 6 10 10 C 1.46905 * 111.00033 * 174.15831 * 9 8 7 11 11 H 1.09000 * 109.47206 * 311.18959 * 10 9 8 12 12 C 1.52999 * 109.46715 * 71.18609 * 10 9 8 13 13 C 1.52995 * 109.47199 * 191.18274 * 10 9 8 14 14 C 1.50700 * 109.47170 * 62.42242 * 13 10 9 15 15 H 1.08004 * 119.99665 * 4.69672 * 14 13 10 16 16 C 1.37878 * 120.00393 * 184.69784 * 14 13 10 17 17 N 1.31511 * 119.99611 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00006 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47225 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47003 * 120.00158 * 18 16 14 21 21 H 1.48498 * 109.46958 * 239.99990 * 18 16 14 22 22 C 1.46852 * 111.23758 * 298.27888 * 9 8 7 23 23 H 1.09002 * 109.46595 * 306.36592 * 1 2 3 24 24 H 1.08991 * 109.47381 * 66.36820 * 1 2 3 25 25 H 1.09001 * 109.46660 * 186.37256 * 1 2 3 26 26 H 1.09003 * 109.46996 * 179.32743 * 4 3 2 27 27 H 1.09001 * 109.46868 * 59.33941 * 4 3 2 28 28 H 0.96696 * 113.99490 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.52253 * 57.58494 * 6 3 2 30 30 H 1.09006 * 109.52027 * 177.70921 * 6 3 2 31 31 H 1.08999 * 109.50373 * 62.28405 * 7 6 3 32 32 H 1.09002 * 109.50345 * 182.40742 * 7 6 3 33 33 H 1.08992 * 109.46549 * 179.19618 * 8 7 6 34 34 H 1.09006 * 109.46330 * 299.16279 * 8 7 6 35 35 H 1.09000 * 109.46964 * 179.97438 * 12 10 9 36 36 H 1.08997 * 109.47254 * 300.00107 * 12 10 9 37 37 H 1.09005 * 109.47476 * 60.00218 * 12 10 9 38 38 H 1.09005 * 109.47105 * 182.41992 * 13 10 9 39 39 H 1.09002 * 109.47430 * 302.42475 * 13 10 9 40 40 H 0.97005 * 119.99699 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.42229 * 301.68755 * 22 9 8 42 42 H 1.08998 * 109.49880 * 181.71534 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4602 2.1095 -1.1797 5 8 1.7977 1.4523 -2.4028 6 6 3.5317 1.1876 -0.1267 7 6 4.0804 0.4338 1.0879 8 6 3.6762 1.1724 2.3658 9 7 2.2121 1.2583 2.4408 10 6 1.7837 1.8382 3.7208 11 1 2.2991 1.3345 4.5385 12 6 2.1247 3.3295 3.7446 13 6 0.2730 1.6579 3.8821 14 6 -0.0565 0.1878 3.9182 15 1 0.7379 -0.5439 3.9110 16 6 -1.3719 -0.2232 3.9605 17 7 -2.3392 0.6678 3.9688 18 14 -1.7802 -2.0455 4.0046 19 1 -0.5227 -2.8352 3.9864 20 1 -2.5393 -2.3529 5.2434 21 1 -2.6033 -2.3972 2.8197 22 6 1.6652 2.0183 1.3095 23 1 -0.3632 0.6094 0.8276 24 1 -0.3634 0.4119 -0.9414 25 1 -0.3633 -1.0213 0.1141 26 1 1.8948 3.1091 -1.1722 27 1 0.3761 2.1842 -1.0944 28 1 1.4795 1.9074 -3.1945 29 1 3.7802 0.6418 -1.0370 30 1 3.9720 2.1839 -0.1677 31 1 3.6696 -0.5757 1.1057 32 1 5.1674 0.3840 1.0247 33 1 4.0531 0.6306 3.2332 34 1 4.0988 2.1771 2.3537 35 1 1.8064 3.7598 4.6941 36 1 3.2010 3.4579 3.6296 37 1 1.6093 3.8332 2.9268 38 1 -0.0516 2.1259 4.8115 39 1 -0.2405 2.1247 3.0415 40 1 -3.2647 0.3787 3.9981 41 1 2.0967 3.0192 1.3028 42 1 0.5822 2.0904 1.4093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595658413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:23 Heat of formation + Delta-G solvation = -93.086235 kcal Electronic energy + Delta-G solvation = -21587.426802 eV Core-core repulsion = 18567.601262 eV Total energy + Delta-G solvation = -3019.825540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.79609 -37.20018 -35.73492 -34.16685 -32.32483 -30.53646 -29.55472 -27.30973 -26.28293 -25.48201 -24.04301 -22.84835 -21.09100 -19.54651 -18.68167 -17.24201 -16.16996 -16.08562 -15.42489 -15.01350 -14.64822 -14.46988 -14.29695 -13.51237 -13.40741 -13.05617 -12.87278 -12.70599 -12.35952 -12.02793 -11.92419 -11.71160 -11.60092 -11.29454 -11.03549 -10.68665 -10.55638 -10.44398 -10.41707 -10.17748 -10.03718 -9.90859 -9.69203 -9.13247 -8.93772 -8.78108 -8.24057 -7.35351 -5.86882 -3.83133 3.39453 3.47577 3.55260 3.98590 4.53207 4.59272 4.72267 4.98979 5.06434 5.34600 5.40757 5.50643 5.52555 5.57514 5.70167 5.74023 5.82250 5.93393 5.95158 6.01593 6.05663 6.09996 6.13149 6.20585 6.30171 6.36528 6.51176 6.55938 6.67162 6.75114 6.78124 7.00131 7.53849 7.63660 7.69667 7.86039 7.99539 8.06937 8.15305 8.60915 9.23068 9.78209 11.24981 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.008536 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.431863 B = 3279.378195 C = 3921.707302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.350 6.350 3 C 0.127 3.873 4 C 0.049 3.951 5 O -0.559 6.559 6 C -0.098 4.098 7 C -0.113 4.113 8 C 0.053 3.947 9 N -0.495 5.495 10 C 0.086 3.914 11 H 0.070 0.930 12 C -0.184 4.184 13 C 0.030 3.970 14 C -0.479 4.479 15 H 0.061 0.939 16 C 0.051 3.949 17 N -0.906 5.906 18 Si 0.884 3.116 19 H -0.272 1.272 20 H -0.289 1.289 21 H -0.287 1.287 22 C 0.037 3.963 23 H 0.064 0.936 24 H 0.024 0.976 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.371 0.629 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.020 0.980 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.050 0.950 38 H 0.015 0.985 39 H 0.018 0.982 40 H 0.255 0.745 41 H 0.030 0.970 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.366 4.970 -9.039 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.086 3.914 4 C -0.030 4.030 5 O -0.363 6.363 6 C -0.135 4.135 7 C -0.151 4.151 8 C -0.075 4.075 9 N -0.218 5.218 10 C -0.022 4.022 11 H 0.088 0.912 12 C -0.243 4.243 13 C -0.007 4.007 14 C -0.518 4.518 15 H 0.080 0.920 16 C -0.148 4.148 17 N -0.547 5.547 18 Si 0.713 3.287 19 H -0.197 1.197 20 H -0.216 1.216 21 H -0.213 1.213 22 C -0.092 4.092 23 H 0.082 0.918 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.217 0.783 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.396 3.889 -8.626 13.335 hybrid contribution -0.645 0.612 -0.307 0.940 sum 8.751 4.501 -8.933 13.290 Atomic orbital electron populations 1.22717 0.81355 1.03041 0.99277 1.87946 1.19398 1.24913 1.94528 1.21450 0.94102 0.84711 0.91108 1.22838 0.99246 0.95285 0.85622 1.86563 1.81017 1.53459 1.15223 1.21427 0.92459 1.00282 0.99353 1.21523 0.98793 1.01124 0.93622 1.22105 0.89530 0.97752 0.98103 1.61846 1.07035 1.51604 1.01279 1.21947 1.00622 0.89734 0.89925 0.91191 1.22533 0.99677 1.00284 1.01834 1.19197 0.87204 0.97586 0.96673 1.21178 0.91492 0.91964 1.47168 0.92048 1.24955 0.96693 0.96859 0.96267 1.69975 0.99180 1.32737 1.52847 0.86651 0.78304 0.86588 0.77198 1.19656 1.21556 1.21348 1.22517 1.02088 0.93856 0.90714 0.91759 0.95765 0.90426 0.93385 0.92999 0.78294 0.90843 0.91976 0.90162 0.92451 0.91261 0.96164 0.92572 0.94131 0.93056 0.96720 0.96342 0.93514 0.95211 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.10 101.05 1.02 1.64 16 2 O -0.35 -6.86 9.58 -44.23 -0.42 -7.29 16 3 C 0.13 2.11 0.51 -90.54 -0.05 2.06 16 4 C 0.05 0.68 5.44 37.16 0.20 0.88 16 5 O -0.56 -7.45 12.92 -44.23 -0.57 -8.02 16 6 C -0.10 -1.46 4.82 -26.61 -0.13 -1.59 16 7 C -0.11 -1.71 5.94 -26.65 -0.16 -1.87 16 8 C 0.05 0.87 5.15 -3.83 -0.02 0.85 16 9 N -0.49 -9.53 4.12 -226.68 -0.93 -10.46 16 10 C 0.09 1.73 2.28 -67.71 -0.15 1.58 16 11 H 0.07 1.45 7.96 -51.93 -0.41 1.03 16 12 C -0.18 -3.14 8.43 37.16 0.31 -2.82 16 13 C 0.03 0.76 4.35 -27.89 -0.12 0.64 16 14 C -0.48 -13.21 8.77 -34.44 -0.30 -13.51 16 15 H 0.06 1.74 7.75 -52.48 -0.41 1.33 16 16 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 17 N -0.91 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.88 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 C 0.04 0.66 3.07 -3.83 -0.01 0.65 16 23 H 0.06 1.39 6.27 -51.93 -0.33 1.06 16 24 H 0.02 0.40 6.71 -51.93 -0.35 0.06 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.72 6.59 -51.93 -0.34 0.38 16 28 H 0.37 3.06 9.12 45.56 0.42 3.48 16 29 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.40 7.80 -51.93 -0.40 1.00 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 34 H 0.02 0.31 6.92 -51.93 -0.36 -0.05 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.61 6.86 -51.93 -0.36 0.26 16 37 H 0.05 0.86 6.45 -51.93 -0.34 0.53 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.48 6.36 -51.93 -0.33 0.15 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 42 H 0.09 1.85 4.57 -51.93 -0.24 1.61 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -31.08 317.94 -7.20 -38.28 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.27 Total: 1.75 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 0.50 Total: -10.16 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.20 Total: -36.44 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -1.00 Total: -15.31 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.08 -7.20 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595658413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.803 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds