Wall clock time and date at job start Mon Mar 30 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42892 * 114.00051 * 2 1 4 4 C 1.52999 * 109.50570 * 305.11803 * 3 2 1 5 5 O 1.42900 * 109.47135 * 299.33531 * 4 3 2 6 6 C 1.53120 * 109.50288 * 185.03753 * 3 2 1 7 7 C 1.53120 * 109.16286 * 297.67722 * 6 3 2 8 8 C 1.53039 * 109.27813 * 302.34495 * 7 6 3 9 9 N 1.46847 * 109.52262 * 59.17622 * 8 7 6 10 10 C 1.46905 * 111.00033 * 174.15831 * 9 8 7 11 11 H 1.09000 * 109.47206 * 311.18959 * 10 9 8 12 12 C 1.52999 * 109.46715 * 71.18609 * 10 9 8 13 13 C 1.52995 * 109.47199 * 191.18274 * 10 9 8 14 14 C 1.50700 * 109.47170 * 62.42242 * 13 10 9 15 15 H 1.08004 * 119.99665 * 4.69672 * 14 13 10 16 16 C 1.37878 * 120.00393 * 184.69784 * 14 13 10 17 17 N 1.31511 * 119.99611 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00006 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47225 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47003 * 120.00158 * 18 16 14 21 21 H 1.48498 * 109.46958 * 239.99990 * 18 16 14 22 22 C 1.46852 * 111.23758 * 298.27888 * 9 8 7 23 23 H 1.09002 * 109.46595 * 306.36592 * 1 2 3 24 24 H 1.08991 * 109.47381 * 66.36820 * 1 2 3 25 25 H 1.09001 * 109.46660 * 186.37256 * 1 2 3 26 26 H 1.09003 * 109.46996 * 179.32743 * 4 3 2 27 27 H 1.09001 * 109.46868 * 59.33941 * 4 3 2 28 28 H 0.96696 * 113.99490 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.52253 * 57.58494 * 6 3 2 30 30 H 1.09006 * 109.52027 * 177.70921 * 6 3 2 31 31 H 1.08999 * 109.50373 * 62.28405 * 7 6 3 32 32 H 1.09002 * 109.50345 * 182.40742 * 7 6 3 33 33 H 1.08992 * 109.46549 * 179.19618 * 8 7 6 34 34 H 1.09006 * 109.46330 * 299.16279 * 8 7 6 35 35 H 1.09000 * 109.46964 * 179.97438 * 12 10 9 36 36 H 1.08997 * 109.47254 * 300.00107 * 12 10 9 37 37 H 1.09005 * 109.47476 * 60.00218 * 12 10 9 38 38 H 1.09005 * 109.47105 * 182.41992 * 13 10 9 39 39 H 1.09002 * 109.47430 * 302.42475 * 13 10 9 40 40 H 0.97005 * 119.99699 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.42229 * 301.68755 * 22 9 8 42 42 H 1.08998 * 109.49880 * 181.71534 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4602 2.1095 -1.1797 5 8 1.7977 1.4523 -2.4028 6 6 3.5317 1.1876 -0.1267 7 6 4.0804 0.4338 1.0879 8 6 3.6762 1.1724 2.3658 9 7 2.2121 1.2583 2.4408 10 6 1.7837 1.8382 3.7208 11 1 2.2991 1.3345 4.5385 12 6 2.1247 3.3295 3.7446 13 6 0.2730 1.6579 3.8821 14 6 -0.0565 0.1878 3.9182 15 1 0.7379 -0.5439 3.9110 16 6 -1.3719 -0.2232 3.9605 17 7 -2.3392 0.6678 3.9688 18 14 -1.7802 -2.0455 4.0046 19 1 -0.5227 -2.8352 3.9864 20 1 -2.5393 -2.3529 5.2434 21 1 -2.6033 -2.3972 2.8197 22 6 1.6652 2.0183 1.3095 23 1 -0.3632 0.6094 0.8276 24 1 -0.3634 0.4119 -0.9414 25 1 -0.3633 -1.0213 0.1141 26 1 1.8948 3.1091 -1.1722 27 1 0.3761 2.1842 -1.0944 28 1 1.4795 1.9074 -3.1945 29 1 3.7802 0.6418 -1.0370 30 1 3.9720 2.1839 -0.1677 31 1 3.6696 -0.5757 1.1057 32 1 5.1674 0.3840 1.0247 33 1 4.0531 0.6306 3.2332 34 1 4.0988 2.1771 2.3537 35 1 1.8064 3.7598 4.6941 36 1 3.2010 3.4579 3.6296 37 1 1.6093 3.8332 2.9268 38 1 -0.0516 2.1259 4.8115 39 1 -0.2405 2.1247 3.0415 40 1 -3.2647 0.3787 3.9981 41 1 2.0967 3.0192 1.3028 42 1 0.5822 2.0904 1.4093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595658413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:23 Heat of formation + Delta-G solvation = -116.194396 kcal Electronic energy + Delta-G solvation = -21588.428847 eV Core-core repulsion = 18567.601262 eV Total energy + Delta-G solvation = -3020.827585 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13955 -38.57713 -36.92150 -35.74835 -34.28353 -31.82554 -31.10911 -29.13593 -27.71220 -26.73662 -25.58441 -24.66397 -22.38974 -21.03071 -20.11081 -18.40117 -18.21065 -17.47235 -16.79290 -16.44090 -16.34942 -16.05623 -15.68809 -15.00466 -14.69574 -14.64500 -14.21751 -14.00713 -13.75191 -13.70118 -13.55843 -13.13978 -12.99694 -12.93573 -12.69781 -12.52457 -12.34930 -12.03230 -11.90914 -11.65803 -11.42896 -11.22549 -11.06339 -10.98686 -10.72665 -10.44562 -10.22440 -8.77551 -8.07128 -6.08884 1.38099 1.40941 1.53486 2.48353 2.74529 3.21113 3.29768 3.50916 3.80600 3.86281 4.12995 4.23502 4.27980 4.37219 4.38767 4.46287 4.47393 4.54047 4.57613 4.63453 4.66084 4.74666 4.82815 4.92486 4.98461 5.03305 5.11859 5.16041 5.22649 5.26497 5.37680 5.52134 5.55057 5.73843 5.92455 6.36401 6.41117 6.57204 6.63623 6.90518 7.03009 7.55668 9.04697 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.008536 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.431863 B = 3279.378195 C = 3921.707302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.371 6.371 3 C 0.117 3.883 4 C 0.055 3.945 5 O -0.573 6.573 6 C -0.092 4.092 7 C -0.108 4.108 8 C 0.054 3.946 9 N -0.521 5.521 10 C 0.093 3.907 11 H 0.063 0.937 12 C -0.173 4.173 13 C 0.039 3.961 14 C -0.483 4.483 15 H 0.050 0.950 16 C 0.004 3.996 17 N -0.936 5.936 18 Si 0.940 3.060 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.044 3.956 23 H 0.031 0.969 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.394 0.606 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.051 0.949 38 H -0.011 1.011 39 H -0.002 1.002 40 H 0.257 0.743 41 H 0.050 0.950 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.202 5.516 -10.189 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.290 6.290 3 C 0.077 3.923 4 C -0.024 4.024 5 O -0.381 6.381 6 C -0.130 4.130 7 C -0.146 4.146 8 C -0.073 4.073 9 N -0.245 5.245 10 C -0.016 4.016 11 H 0.081 0.919 12 C -0.232 4.232 13 C 0.001 3.999 14 C -0.521 4.521 15 H 0.068 0.932 16 C -0.192 4.192 17 N -0.579 5.579 18 Si 0.768 3.232 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.084 4.084 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.244 0.756 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.008 0.992 39 H 0.017 0.983 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.240 4.443 -9.794 15.556 hybrid contribution -1.194 0.449 0.030 1.276 sum 10.046 4.892 -9.764 14.839 Atomic orbital electron populations 1.22532 0.81740 1.01952 0.99117 1.87906 1.19145 1.27254 1.94666 1.21725 0.95366 0.83657 0.91591 1.22676 0.98853 0.95813 0.85028 1.86500 1.81261 1.54346 1.15952 1.21442 0.90971 1.01620 0.98933 1.21492 1.00549 0.99285 0.93276 1.22160 0.87404 0.99068 0.98702 1.61710 1.09323 1.52464 1.00985 1.21648 0.96982 0.92213 0.90712 0.91905 1.22383 1.01358 0.97448 1.01997 1.19034 0.90795 0.95622 0.94408 1.21371 0.91228 0.93177 1.46372 0.93185 1.25631 0.96749 1.00589 0.96196 1.70076 0.99441 1.34459 1.53929 0.85759 0.78001 0.82104 0.77381 1.19564 1.20940 1.20824 1.22411 1.00060 0.94940 0.91034 0.94993 0.93473 0.91282 0.90705 0.93688 0.75648 0.91020 0.89371 0.93145 0.89336 0.91430 0.93969 0.92448 0.91434 0.93000 0.99234 0.98333 0.93451 0.93192 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 10.10 113.37 1.14 2.83 16 2 O -0.37 -14.51 9.58 -140.38 -1.35 -15.85 16 3 C 0.12 3.70 0.51 -10.74 -0.01 3.69 16 4 C 0.05 1.40 5.44 71.98 0.39 1.79 16 5 O -0.57 -13.75 12.92 -140.38 -1.81 -15.56 16 6 C -0.09 -2.48 4.82 30.67 0.15 -2.34 16 7 C -0.11 -3.03 5.94 30.65 0.18 -2.84 16 8 C 0.05 1.64 5.15 86.33 0.44 2.08 16 9 N -0.52 -19.75 4.12 -871.09 -3.59 -23.34 16 10 C 0.09 3.74 2.28 44.91 0.10 3.84 16 11 H 0.06 2.59 7.96 -2.39 -0.02 2.58 16 12 C -0.17 -5.59 8.43 71.98 0.61 -4.99 16 13 C 0.04 1.98 4.35 29.85 0.13 2.11 16 14 C -0.48 -27.40 8.77 25.60 0.22 -27.17 16 15 H 0.05 2.90 7.75 -2.91 -0.02 2.88 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.94 -56.66 13.29 21.45 0.28 -56.38 16 18 Si 0.94 46.17 29.54 68.60 2.03 48.19 16 19 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 20 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 22 C 0.04 1.53 3.07 86.33 0.27 1.80 16 23 H 0.03 1.44 6.27 -2.39 -0.01 1.42 16 24 H 0.05 1.58 6.71 -2.39 -0.02 1.56 16 25 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.20 6.59 -2.39 -0.02 1.18 16 28 H 0.39 5.33 9.12 -74.06 -0.68 4.65 16 29 H 0.07 1.98 7.75 -2.39 -0.02 1.96 16 30 H 0.09 1.93 8.14 -2.38 -0.02 1.92 16 31 H 0.05 1.71 7.80 -2.39 -0.02 1.69 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 2.05 8.00 -2.39 -0.02 2.03 16 34 H 0.04 1.10 6.92 -2.38 -0.02 1.09 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.82 6.86 -2.39 -0.02 1.81 16 37 H 0.05 1.66 6.45 -2.38 -0.02 1.64 16 38 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 39 H 0.00 -0.09 6.36 -2.39 -0.02 -0.10 16 40 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 41 H 0.05 1.52 6.57 -2.39 -0.02 1.50 16 42 H 0.06 2.39 4.57 -2.39 -0.01 2.38 16 Total: -1.00 -68.07 317.94 -0.02 -68.08 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.32 Total: 13.33 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.10 Total: -18.47 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -3.31 Total: -79.72 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -3.16 Total: -31.42 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -68.07 -0.02 -68.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595658413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.110 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds