Wall clock time and date at job start Mon Mar 30 2020 05:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00050 * 2 1 4 4 C 1.53004 * 109.50276 * 63.94771 * 3 2 1 5 5 O 1.42904 * 109.46881 * 58.90093 * 4 3 2 6 6 C 1.53120 * 109.50311 * 184.02688 * 3 2 1 7 7 C 1.53115 * 109.16025 * 62.32723 * 6 3 2 8 8 C 1.53036 * 109.28033 * 57.65302 * 7 6 3 9 9 N 1.46844 * 109.52319 * 300.82250 * 8 7 6 10 10 C 1.46905 * 110.99989 * 185.83751 * 9 8 7 11 11 H 1.09002 * 109.46850 * 186.04880 * 10 9 8 12 12 C 1.53000 * 109.46865 * 306.04601 * 10 9 8 13 13 C 1.52992 * 109.46967 * 66.04356 * 10 9 8 14 14 C 1.50700 * 109.47075 * 65.00253 * 13 10 9 15 15 H 1.07998 * 120.00224 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00099 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00291 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99937 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46849 * 269.99816 * 18 16 14 20 20 H 1.48496 * 109.47081 * 29.99841 * 18 16 14 21 21 H 1.48505 * 109.46996 * 150.00143 * 18 16 14 22 22 C 1.46848 * 111.20079 * 61.73857 * 9 8 7 23 23 H 1.09002 * 109.46757 * 65.83809 * 1 2 3 24 24 H 1.08995 * 109.47387 * 185.84063 * 1 2 3 25 25 H 1.09007 * 109.47378 * 305.84482 * 1 2 3 26 26 H 1.09000 * 109.46807 * 178.90007 * 4 3 2 27 27 H 1.09000 * 109.46949 * 298.90031 * 4 3 2 28 28 H 0.96703 * 113.99749 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.51981 * 302.42160 * 6 3 2 30 30 H 1.08993 * 109.52282 * 182.23327 * 6 3 2 31 31 H 1.09004 * 109.50016 * 297.71411 * 7 6 3 32 32 H 1.08993 * 109.53807 * 177.61825 * 7 6 3 33 33 H 1.09002 * 109.46444 * 180.80338 * 8 7 6 34 34 H 1.09002 * 109.45933 * 60.83265 * 8 7 6 35 35 H 1.09000 * 109.47493 * 60.00055 * 12 10 9 36 36 H 1.09004 * 109.47107 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.47244 * 299.99440 * 12 10 9 38 38 H 1.08995 * 109.47812 * 305.00345 * 13 10 9 39 39 H 1.09006 * 109.47034 * 184.99678 * 13 10 9 40 40 H 0.97000 * 120.00636 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.46003 * 58.27222 * 22 9 8 42 42 H 1.08993 * 109.46533 * 178.23780 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6394 2.0297 1.2957 5 8 2.1107 1.2758 2.4145 6 6 3.5335 1.1868 -0.1014 7 6 3.8981 0.5151 -1.4281 8 6 3.3176 1.3322 -2.5845 9 7 1.8584 1.4159 -2.4424 10 6 1.2529 2.0747 -3.6074 11 1 0.1874 2.2201 -3.4295 12 6 1.9226 3.4321 -3.8309 13 6 1.4483 1.1995 -4.8469 14 6 0.6861 -0.0894 -4.6769 15 1 0.1194 -0.2667 -3.7749 16 6 0.7122 -1.0423 -5.6731 17 7 0.0467 -2.1669 -5.5250 18 14 1.6931 -0.7360 -7.2331 19 1 0.8283 -0.0672 -8.2382 20 1 2.8562 0.1337 -6.9237 21 1 2.1743 -2.0312 -7.7776 22 6 1.4845 2.0997 -1.1978 23 1 -0.3633 0.4207 -0.9377 24 1 -0.3634 -1.0223 0.1046 25 1 -0.3634 0.6018 0.8331 26 1 2.0991 3.0180 1.3038 27 1 0.5560 2.1324 1.3572 28 1 1.9100 1.6765 3.2714 29 1 3.9078 0.5849 0.7267 30 1 3.9797 2.1805 -0.0615 31 1 3.4843 -0.4931 -1.4513 32 1 4.9825 0.4657 -1.5258 33 1 3.5633 0.8488 -3.5301 34 1 3.7421 2.3360 -2.5689 35 1 2.9881 3.2868 -4.0088 36 1 1.4730 3.9212 -4.6951 37 1 1.7833 4.0558 -2.9478 38 1 2.5085 0.9805 -4.9738 39 1 1.0784 1.7270 -5.7262 40 1 0.0647 -2.8372 -6.2259 41 1 1.9177 3.0999 -1.1886 42 1 0.3988 2.1738 -1.1361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595658414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:26 Heat of formation + Delta-G solvation = -88.092521 kcal Electronic energy + Delta-G solvation = -21296.201627 eV Core-core repulsion = 18276.592631 eV Total energy + Delta-G solvation = -3019.608996 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91711 -37.36682 -35.92900 -34.07574 -32.30984 -30.64303 -29.96171 -27.75352 -26.41807 -25.63361 -24.08208 -22.32372 -21.64926 -19.45484 -18.61299 -17.36980 -16.52585 -16.13391 -15.76301 -15.12046 -14.86069 -14.48797 -14.05006 -13.97715 -13.39569 -13.05201 -13.00433 -12.74865 -12.36843 -12.32052 -12.14399 -11.88047 -11.75492 -11.52499 -11.28420 -10.79945 -10.70836 -10.41170 -10.30927 -10.19750 -10.11886 -9.74328 -9.57607 -9.51087 -9.01683 -8.93733 -8.37984 -7.45142 -5.86237 -3.79850 3.37687 3.45949 3.47949 3.84435 4.37393 4.57768 4.61675 4.85322 4.98619 5.21791 5.26182 5.38075 5.47886 5.49655 5.58757 5.65503 5.73129 5.75774 5.81858 5.84565 5.88355 5.98761 6.07659 6.08618 6.23874 6.28475 6.34866 6.41108 6.54020 6.63239 6.78638 6.88434 7.14651 7.35832 7.53376 7.69567 7.84421 7.87597 8.00411 8.76552 9.26856 9.76657 11.27839 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.006632 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.400921 B = 4220.952604 C = 4564.638170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.347 6.347 3 C 0.127 3.873 4 C 0.052 3.948 5 O -0.556 6.556 6 C -0.098 4.098 7 C -0.115 4.115 8 C 0.056 3.944 9 N -0.495 5.495 10 C 0.096 3.904 11 H 0.073 0.927 12 C -0.187 4.187 13 C -0.006 4.006 14 C -0.487 4.487 15 H 0.079 0.921 16 C 0.062 3.938 17 N -0.907 5.907 18 Si 0.872 3.128 19 H -0.281 1.281 20 H -0.269 1.269 21 H -0.290 1.290 22 C 0.032 3.968 23 H 0.053 0.947 24 H 0.080 0.920 25 H 0.026 0.974 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.372 0.628 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.021 0.979 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.018 0.982 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.032 0.968 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 11.343 12.498 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.086 3.914 4 C -0.027 4.027 5 O -0.360 6.360 6 C -0.136 4.136 7 C -0.153 4.153 8 C -0.071 4.071 9 N -0.217 5.217 10 C -0.012 4.012 11 H 0.091 0.909 12 C -0.246 4.246 13 C -0.044 4.044 14 C -0.525 4.525 15 H 0.097 0.903 16 C -0.138 4.138 17 N -0.547 5.547 18 Si 0.700 3.300 19 H -0.207 1.207 20 H -0.194 1.194 21 H -0.216 1.216 22 C -0.097 4.097 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.217 0.783 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.646 10.117 11.935 16.322 hybrid contribution 0.282 1.611 -0.519 1.716 sum 4.928 11.728 11.416 17.093 Atomic orbital electron populations 1.22693 0.81885 1.02245 0.99526 1.88020 1.19030 1.24950 1.94450 1.21449 0.94886 0.84682 0.90364 1.22789 0.97903 0.94220 0.87810 1.86592 1.82005 1.51497 1.15927 1.21443 0.92321 1.00665 0.99122 1.21550 0.99091 1.01481 0.93178 1.22115 0.87875 0.97397 0.99761 1.61846 1.08945 1.50984 0.99972 1.21705 0.97512 0.90226 0.91733 0.90894 1.22573 1.01653 0.99615 1.00805 1.19684 0.97305 0.95887 0.91490 1.21023 1.28652 0.98750 1.04107 0.90303 1.24999 0.95496 0.95258 0.98007 1.69909 1.43144 1.07776 1.33919 0.86922 0.81207 0.77387 0.84507 1.20702 1.19390 1.21647 1.22549 1.00678 0.94931 0.91529 0.92869 0.90099 0.95520 0.93290 0.93421 0.78255 0.90735 0.91931 0.89788 0.92266 0.89736 0.96060 0.92734 0.92519 0.93964 0.96424 0.96939 0.93138 0.94989 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.13 101.05 1.02 1.56 16 2 O -0.35 -6.35 9.55 -45.69 -0.44 -6.78 16 3 C 0.13 1.93 0.50 -90.54 -0.05 1.88 16 4 C 0.05 0.62 5.67 37.16 0.21 0.83 16 5 O -0.56 -6.75 12.96 -45.69 -0.59 -7.34 16 6 C -0.10 -1.44 4.84 -26.61 -0.13 -1.57 16 7 C -0.12 -1.88 5.94 -26.65 -0.16 -2.03 16 8 C 0.06 0.99 4.54 -3.84 -0.02 0.97 16 9 N -0.49 -9.33 4.20 -226.70 -0.95 -10.28 16 10 C 0.10 1.88 2.25 -67.71 -0.15 1.72 16 11 H 0.07 1.46 7.98 -51.93 -0.41 1.05 16 12 C -0.19 -2.99 8.44 37.16 0.31 -2.67 16 13 C -0.01 -0.15 3.44 -27.89 -0.10 -0.24 16 14 C -0.49 -13.82 9.39 -34.44 -0.32 -14.14 16 15 H 0.08 2.46 7.99 -52.49 -0.42 2.04 16 16 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 17 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 18 Si 0.87 22.06 27.47 -169.99 -4.67 17.39 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 C 0.03 0.50 3.42 -3.84 -0.01 0.49 16 23 H 0.05 0.94 6.68 -51.93 -0.35 0.59 16 24 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 25 H 0.03 0.36 6.28 -51.92 -0.33 0.03 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 28 H 0.37 2.58 9.12 45.56 0.42 3.00 16 29 H 0.07 1.12 7.79 -51.93 -0.40 0.72 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.61 7.80 -51.93 -0.40 1.21 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.66 6.13 -51.93 -0.32 1.35 16 34 H 0.02 0.34 6.58 -51.93 -0.34 0.00 16 35 H 0.05 0.86 6.46 -51.93 -0.34 0.52 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.59 6.82 -51.93 -0.35 0.24 16 38 H 0.02 0.42 5.29 -51.93 -0.27 0.15 16 39 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.03 0.45 6.88 -51.93 -0.36 0.10 16 42 H 0.07 1.14 6.46 -51.93 -0.34 0.81 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -32.95 314.36 -6.86 -39.81 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.23 Total: 1.67 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 0.52 Total: -11.48 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.18 Total: -38.01 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -1.03 Total: -14.12 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.95 -6.86 -39.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595658414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.283 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds