Wall clock time and date at job start Mon Mar 30 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00366 * 2 1 4 4 C 1.53004 * 109.49994 * 303.96166 * 3 2 1 5 5 O 1.42897 * 109.47124 * 301.35568 * 4 3 2 6 6 C 1.53116 * 109.53846 * 183.86244 * 3 2 1 7 7 C 1.53115 * 109.16321 * 297.68913 * 6 3 2 8 8 C 1.53038 * 109.28080 * 302.35000 * 7 6 3 9 9 N 1.46853 * 109.52116 * 59.17219 * 8 7 6 10 10 C 1.46901 * 110.99623 * 174.15961 * 9 8 7 11 11 H 1.08993 * 109.47204 * 179.20904 * 10 9 8 12 12 C 1.53009 * 109.46740 * 59.21422 * 10 9 8 13 13 C 1.53000 * 109.47550 * 299.21664 * 10 9 8 14 14 C 1.50705 * 109.46697 * 294.99900 * 13 10 9 15 15 H 1.07994 * 119.99868 * 359.97438 * 14 13 10 16 16 C 1.37882 * 119.99551 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00229 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99560 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47007 * 60.00211 * 18 16 14 20 20 H 1.48496 * 109.46983 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47378 * 300.00264 * 18 16 14 22 22 C 1.46842 * 111.20003 * 298.26144 * 9 8 7 23 23 H 1.08998 * 109.47193 * 64.71700 * 1 2 3 24 24 H 1.09003 * 109.47317 * 184.71637 * 1 2 3 25 25 H 1.08996 * 109.47490 * 304.71445 * 1 2 3 26 26 H 1.08997 * 109.47060 * 61.35665 * 4 3 2 27 27 H 1.08998 * 109.47107 * 181.35542 * 4 3 2 28 28 H 0.96701 * 114.00551 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.52302 * 57.59751 * 6 3 2 30 30 H 1.09002 * 109.51977 * 177.71871 * 6 3 2 31 31 H 1.09005 * 109.50045 * 62.28848 * 7 6 3 32 32 H 1.08998 * 109.50482 * 182.40363 * 7 6 3 33 33 H 1.09002 * 109.46145 * 299.16360 * 8 7 6 34 34 H 1.08996 * 109.46488 * 179.19108 * 8 7 6 35 35 H 1.08999 * 109.47152 * 60.00127 * 12 10 9 36 36 H 1.09004 * 109.46742 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.47140 * 299.99252 * 12 10 9 38 38 H 1.08995 * 109.47433 * 54.99642 * 13 10 9 39 39 H 1.08996 * 109.47220 * 174.99748 * 13 10 9 40 40 H 0.96999 * 119.99574 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.45975 * 181.76005 * 22 9 8 42 42 H 1.08999 * 109.46088 * 301.72570 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4820 2.0998 -1.1962 5 8 1.8010 1.4084 -2.4054 6 6 3.5338 1.1876 -0.0972 7 6 4.0599 0.4440 1.1335 8 6 3.6314 1.1925 2.3977 9 7 2.1661 1.2781 2.4444 10 6 1.7134 1.8679 3.7113 11 1 0.6254 1.9325 3.7138 12 6 2.3078 3.2697 3.8624 13 6 2.1749 0.9901 4.8764 14 6 1.4932 -0.3515 4.7951 15 1 0.7999 -0.5572 3.9931 16 6 1.7548 -1.3163 5.7448 17 7 2.5995 -1.0659 6.7212 18 14 0.9093 -2.9790 5.6445 19 1 1.2600 -3.6359 4.3597 20 1 1.3582 -3.8315 6.7745 21 1 -0.5620 -2.7915 5.7192 22 6 1.6412 2.0291 1.2969 23 1 -0.3633 0.4389 -0.9292 24 1 -0.3634 -1.0242 0.0845 25 1 -0.3634 0.5852 0.8447 26 1 0.4004 2.2058 -1.1129 27 1 1.9439 3.0869 -1.2095 28 1 1.4953 1.8554 -3.2066 29 1 3.7996 0.6346 -0.9981 30 1 3.9743 2.1838 -0.1380 31 1 3.6494 -0.5657 1.1517 32 1 5.1479 0.3943 1.0911 33 1 4.0536 2.1974 2.3854 34 1 3.9922 0.6579 3.2763 35 1 1.9790 3.8951 3.0324 36 1 1.9723 3.7072 4.8027 37 1 3.3958 3.2052 3.8600 38 1 3.2548 0.8527 4.8223 39 1 1.9168 1.4723 5.8192 40 1 2.7831 -1.7446 7.3895 41 1 0.5565 2.1020 1.3761 42 1 2.0727 3.0300 1.2898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595658415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:29 Heat of formation + Delta-G solvation = -91.919168 kcal Electronic energy + Delta-G solvation = -21256.395871 eV Core-core repulsion = 18236.620939 eV Total energy + Delta-G solvation = -3019.774932 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89745 -37.35835 -35.94596 -34.02935 -32.36384 -30.61430 -29.67861 -27.28589 -26.56768 -25.54209 -24.03171 -22.58949 -21.66538 -19.50497 -18.54390 -17.39723 -16.13616 -16.08295 -15.74633 -15.12659 -14.90816 -14.46349 -14.12042 -13.96965 -13.40956 -13.08391 -12.94060 -12.78194 -12.33855 -12.16272 -11.93313 -11.72232 -11.68684 -11.38286 -11.05633 -10.79041 -10.61372 -10.48194 -10.28000 -10.20105 -10.12931 -9.95737 -9.65499 -9.20246 -9.00361 -8.90742 -8.20117 -7.37704 -5.84000 -3.81215 3.45416 3.48734 3.53809 3.81663 4.33227 4.61183 4.68578 4.84554 4.97301 5.21337 5.28063 5.38833 5.53413 5.54497 5.61988 5.66801 5.71936 5.81353 5.83562 5.91003 5.92494 6.01169 6.11699 6.14248 6.15893 6.30787 6.35771 6.51297 6.67596 6.79958 6.91941 7.00537 7.48424 7.58450 7.63222 7.75335 7.98812 8.06627 8.17832 8.62802 9.24580 9.80419 11.28005 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.006911 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.019129 B = 4050.639776 C = 4581.409796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.346 6.346 3 C 0.127 3.873 4 C 0.050 3.950 5 O -0.557 6.557 6 C -0.098 4.098 7 C -0.114 4.114 8 C 0.055 3.945 9 N -0.496 5.496 10 C 0.087 3.913 11 H 0.067 0.933 12 C -0.185 4.185 13 C 0.029 3.971 14 C -0.488 4.488 15 H 0.060 0.940 16 C 0.051 3.949 17 N -0.905 5.905 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.032 3.968 23 H 0.029 0.971 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.372 0.628 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.093 0.907 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.021 0.979 39 H 0.018 0.982 40 H 0.257 0.743 41 H 0.071 0.929 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 8.692 -15.079 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.086 3.914 4 C -0.028 4.028 5 O -0.361 6.361 6 C -0.136 4.136 7 C -0.152 4.152 8 C -0.073 4.073 9 N -0.219 5.219 10 C -0.021 4.021 11 H 0.086 0.914 12 C -0.244 4.244 13 C -0.008 4.008 14 C -0.526 4.526 15 H 0.079 0.921 16 C -0.148 4.148 17 N -0.546 5.546 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.097 4.097 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.218 0.782 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.111 0.889 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.998 7.527 -14.511 16.378 hybrid contribution -0.686 0.656 -0.305 0.997 sum -1.684 8.183 -14.816 17.009 Atomic orbital electron populations 1.22662 0.82317 1.02582 0.98816 1.88031 1.18637 1.25287 1.94443 1.21490 0.94773 0.84273 0.90816 1.22819 0.98852 0.95108 0.86058 1.86589 1.82498 1.51689 1.15319 1.21456 0.91872 1.00531 0.99724 1.21545 0.99110 1.01228 0.93304 1.22142 0.88131 0.97761 0.99220 1.61896 1.09314 1.50288 1.00403 1.21937 0.98677 0.90905 0.90586 0.91449 1.22538 1.01522 0.99594 1.00728 1.19227 0.96919 0.94024 0.90589 1.21128 1.24521 0.97628 1.09351 0.92139 1.24986 0.95643 0.98472 0.95714 1.69952 1.35799 1.34346 1.14541 0.86704 0.79735 0.84486 0.77319 1.20242 1.21739 1.20610 1.22522 1.00306 0.94891 0.91995 0.95225 0.90109 0.93659 0.93428 0.93195 0.78212 0.90863 0.91871 0.90038 0.92265 0.96258 0.88900 0.94311 0.92553 0.92851 0.96097 0.96413 0.93332 0.91081 0.94890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.15 101.05 1.03 1.52 16 2 O -0.35 -6.11 9.55 -45.89 -0.44 -6.55 16 3 C 0.13 1.91 0.50 -90.54 -0.05 1.87 16 4 C 0.05 0.59 5.40 37.16 0.20 0.79 16 5 O -0.56 -6.56 12.97 -45.89 -0.60 -7.15 16 6 C -0.10 -1.46 4.85 -26.61 -0.13 -1.59 16 7 C -0.11 -1.90 5.94 -26.65 -0.16 -2.06 16 8 C 0.06 1.02 4.64 -3.83 -0.02 1.00 16 9 N -0.50 -9.56 4.24 -226.69 -0.96 -10.52 16 10 C 0.09 1.77 2.30 -67.71 -0.16 1.62 16 11 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 12 C -0.18 -3.17 8.50 37.16 0.32 -2.85 16 13 C 0.03 0.75 4.27 -27.88 -0.12 0.63 16 14 C -0.49 -13.78 8.84 -34.44 -0.30 -14.08 16 15 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 16 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 17 N -0.91 -27.48 13.29 55.43 0.74 -26.75 16 18 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.03 0.50 3.55 -3.84 -0.01 0.49 16 23 H 0.03 0.37 6.66 -51.93 -0.35 0.03 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.04 0.68 6.29 -51.93 -0.33 0.36 16 26 H 0.05 0.51 6.68 -51.93 -0.35 0.16 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.37 2.47 9.12 45.56 0.42 2.89 16 29 H 0.07 1.10 7.80 -51.93 -0.41 0.70 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.57 7.80 -51.93 -0.41 1.16 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.02 0.33 6.62 -51.93 -0.34 -0.01 16 34 H 0.09 1.99 5.93 -51.93 -0.31 1.69 16 35 H 0.04 0.58 6.65 -51.93 -0.35 0.23 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.91 6.52 -51.93 -0.34 0.58 16 38 H 0.02 0.56 6.05 -51.93 -0.31 0.25 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.07 1.09 6.43 -51.93 -0.33 0.76 16 42 H 0.03 0.48 6.73 -51.93 -0.35 0.13 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -32.24 317.56 -7.24 -39.48 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.24 Total: 0.53 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 0.50 Total: -11.29 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.23 Total: -37.27 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.03 Total: -13.71 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.24 -7.24 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595658415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.443 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds