Wall clock time and date at job start Mon Mar 30 2020 05:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00366 * 2 1 4 4 C 1.53004 * 109.49994 * 303.96166 * 3 2 1 5 5 O 1.42897 * 109.47124 * 301.35568 * 4 3 2 6 6 C 1.53116 * 109.53846 * 183.86244 * 3 2 1 7 7 C 1.53115 * 109.16321 * 297.68913 * 6 3 2 8 8 C 1.53038 * 109.28080 * 302.35000 * 7 6 3 9 9 N 1.46853 * 109.52116 * 59.17219 * 8 7 6 10 10 C 1.46901 * 110.99623 * 174.15961 * 9 8 7 11 11 H 1.08993 * 109.47204 * 179.20904 * 10 9 8 12 12 C 1.53009 * 109.46740 * 59.21422 * 10 9 8 13 13 C 1.53000 * 109.47550 * 299.21664 * 10 9 8 14 14 C 1.50705 * 109.46697 * 294.99900 * 13 10 9 15 15 H 1.07994 * 119.99868 * 359.97438 * 14 13 10 16 16 C 1.37882 * 119.99551 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00229 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99560 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47007 * 60.00211 * 18 16 14 20 20 H 1.48496 * 109.46983 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47378 * 300.00264 * 18 16 14 22 22 C 1.46842 * 111.20003 * 298.26144 * 9 8 7 23 23 H 1.08998 * 109.47193 * 64.71700 * 1 2 3 24 24 H 1.09003 * 109.47317 * 184.71637 * 1 2 3 25 25 H 1.08996 * 109.47490 * 304.71445 * 1 2 3 26 26 H 1.08997 * 109.47060 * 61.35665 * 4 3 2 27 27 H 1.08998 * 109.47107 * 181.35542 * 4 3 2 28 28 H 0.96701 * 114.00551 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.52302 * 57.59751 * 6 3 2 30 30 H 1.09002 * 109.51977 * 177.71871 * 6 3 2 31 31 H 1.09005 * 109.50045 * 62.28848 * 7 6 3 32 32 H 1.08998 * 109.50482 * 182.40363 * 7 6 3 33 33 H 1.09002 * 109.46145 * 299.16360 * 8 7 6 34 34 H 1.08996 * 109.46488 * 179.19108 * 8 7 6 35 35 H 1.08999 * 109.47152 * 60.00127 * 12 10 9 36 36 H 1.09004 * 109.46742 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.47140 * 299.99252 * 12 10 9 38 38 H 1.08995 * 109.47433 * 54.99642 * 13 10 9 39 39 H 1.08996 * 109.47220 * 174.99748 * 13 10 9 40 40 H 0.96999 * 119.99574 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.45975 * 181.76005 * 22 9 8 42 42 H 1.08999 * 109.46088 * 301.72570 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4820 2.0998 -1.1962 5 8 1.8010 1.4084 -2.4054 6 6 3.5338 1.1876 -0.0972 7 6 4.0599 0.4440 1.1335 8 6 3.6314 1.1925 2.3977 9 7 2.1661 1.2781 2.4444 10 6 1.7134 1.8679 3.7113 11 1 0.6254 1.9325 3.7138 12 6 2.3078 3.2697 3.8624 13 6 2.1749 0.9901 4.8764 14 6 1.4932 -0.3515 4.7951 15 1 0.7999 -0.5572 3.9931 16 6 1.7548 -1.3163 5.7448 17 7 2.5995 -1.0659 6.7212 18 14 0.9093 -2.9790 5.6445 19 1 1.2600 -3.6359 4.3597 20 1 1.3582 -3.8315 6.7745 21 1 -0.5620 -2.7915 5.7192 22 6 1.6412 2.0291 1.2969 23 1 -0.3633 0.4389 -0.9292 24 1 -0.3634 -1.0242 0.0845 25 1 -0.3634 0.5852 0.8447 26 1 0.4004 2.2058 -1.1129 27 1 1.9439 3.0869 -1.2095 28 1 1.4953 1.8554 -3.2066 29 1 3.7996 0.6346 -0.9981 30 1 3.9743 2.1838 -0.1380 31 1 3.6494 -0.5657 1.1517 32 1 5.1479 0.3943 1.0911 33 1 4.0536 2.1974 2.3854 34 1 3.9922 0.6579 3.2763 35 1 1.9790 3.8951 3.0324 36 1 1.9723 3.7072 4.8027 37 1 3.3958 3.2052 3.8600 38 1 3.2548 0.8527 4.8223 39 1 1.9168 1.4723 5.8192 40 1 2.7831 -1.7446 7.3895 41 1 0.5565 2.1020 1.3761 42 1 2.0727 3.0300 1.2898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595658415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:28 Heat of formation + Delta-G solvation = -116.309734 kcal Electronic energy + Delta-G solvation = -21257.453525 eV Core-core repulsion = 18236.620939 eV Total energy + Delta-G solvation = -3020.832586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14108 -38.68000 -36.92644 -35.60279 -34.34237 -31.88039 -31.21251 -29.12391 -27.70161 -26.69994 -25.60440 -24.40309 -22.98281 -20.79762 -20.03411 -18.33630 -18.25356 -17.35814 -16.99985 -16.51727 -16.33673 -16.06938 -15.52152 -15.33292 -14.67975 -14.49802 -14.18883 -14.16568 -13.83093 -13.58354 -13.43844 -13.16095 -13.03615 -12.92174 -12.72904 -12.55656 -12.39876 -12.03173 -11.84395 -11.70216 -11.51686 -11.10074 -11.06733 -10.93690 -10.81405 -10.44743 -10.22634 -8.80985 -8.08970 -6.12559 1.39994 1.43598 1.50665 2.47764 2.73921 3.20676 3.28916 3.49488 3.79127 3.86092 4.11874 4.21537 4.28483 4.38456 4.40837 4.44728 4.48201 4.52447 4.57668 4.61234 4.62912 4.73022 4.81278 4.89311 4.96831 4.98937 5.07884 5.13498 5.22583 5.25045 5.36308 5.53133 5.54141 5.72858 5.91874 6.35485 6.41083 6.55949 6.61491 6.95184 7.00681 7.52748 9.02803 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.006911 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.019129 B = 4050.639776 C = 4581.409796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.118 3.882 4 C 0.058 3.942 5 O -0.577 6.577 6 C -0.093 4.093 7 C -0.109 4.109 8 C 0.061 3.939 9 N -0.520 5.520 10 C 0.095 3.905 11 H 0.062 0.938 12 C -0.174 4.174 13 C 0.035 3.965 14 C -0.495 4.495 15 H 0.054 0.946 16 C -0.003 4.003 17 N -0.939 5.939 18 Si 0.951 3.049 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.035 3.965 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.395 0.605 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.050 0.950 38 H -0.001 1.001 39 H -0.008 1.008 40 H 0.258 0.742 41 H 0.075 0.925 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 10.014 -17.223 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C 0.078 3.922 4 C -0.021 4.021 5 O -0.385 6.385 6 C -0.130 4.130 7 C -0.147 4.147 8 C -0.067 4.067 9 N -0.244 5.244 10 C -0.013 4.013 11 H 0.080 0.920 12 C -0.233 4.233 13 C -0.002 4.002 14 C -0.534 4.534 15 H 0.072 0.928 16 C -0.199 4.199 17 N -0.582 5.582 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.094 4.094 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.244 0.756 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.017 0.983 39 H 0.010 0.990 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.685 8.866 -16.683 18.968 hybrid contribution -0.461 0.240 0.337 0.620 sum -2.146 9.106 -16.346 18.834 Atomic orbital electron populations 1.22712 0.81365 1.02528 0.99770 1.87986 1.19924 1.27285 1.94711 1.21679 0.94770 0.83736 0.91982 1.22669 0.99553 0.95098 0.84752 1.86528 1.82907 1.52714 1.16334 1.21442 0.92122 1.01391 0.98038 1.21472 1.00110 0.99380 0.93745 1.22006 0.88005 0.98384 0.98262 1.61747 1.09746 1.51905 1.00991 1.21619 0.98348 0.91758 0.89579 0.91957 1.22392 1.01129 0.97663 1.02091 1.19083 0.95346 0.93914 0.91860 1.21427 1.24158 0.99003 1.08777 0.92776 1.25787 0.96416 1.02163 0.95529 1.70075 1.37244 1.35512 1.15338 0.85706 0.79174 0.80148 0.77196 1.20242 1.21187 1.19409 1.22570 1.00498 0.95490 0.90821 0.92779 0.90567 0.94291 0.92269 0.90755 0.75570 0.91120 0.89348 0.93528 0.90528 0.94263 0.93114 0.91223 0.92478 0.93068 0.98265 0.98985 0.93333 0.90690 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 10.15 113.37 1.15 2.08 16 2 O -0.38 -13.03 9.55 -138.79 -1.33 -14.36 16 3 C 0.12 3.27 0.50 -10.74 -0.01 3.26 16 4 C 0.06 1.13 5.40 71.98 0.39 1.52 16 5 O -0.58 -11.59 12.97 -138.79 -1.80 -13.39 16 6 C -0.09 -2.53 4.85 30.67 0.15 -2.38 16 7 C -0.11 -3.60 5.94 30.65 0.18 -3.42 16 8 C 0.06 2.26 4.64 86.32 0.40 2.66 16 9 N -0.52 -19.79 4.24 -871.12 -3.69 -23.48 16 10 C 0.10 3.87 2.30 44.92 0.10 3.97 16 11 H 0.06 2.58 8.08 -2.39 -0.02 2.56 16 12 C -0.17 -5.66 8.50 71.99 0.61 -5.05 16 13 C 0.04 1.85 4.27 29.85 0.13 1.97 16 14 C -0.50 -28.76 8.84 25.60 0.23 -28.53 16 15 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 17 N -0.94 -58.61 13.29 21.45 0.28 -58.32 16 18 Si 0.95 46.95 29.54 68.60 2.03 48.97 16 19 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 C 0.03 1.00 3.55 86.33 0.31 1.31 16 23 H 0.05 1.24 6.66 -2.39 -0.02 1.22 16 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.04 1.13 6.29 -2.39 -0.02 1.11 16 26 H 0.06 1.02 6.68 -2.39 -0.02 1.01 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.39 3.76 9.12 -74.06 -0.68 3.09 16 29 H 0.07 1.98 7.80 -2.39 -0.02 1.96 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.84 7.80 -2.38 -0.02 1.82 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.27 6.62 -2.39 -0.02 1.26 16 34 H 0.05 2.28 5.93 -2.39 -0.01 2.26 16 35 H 0.07 1.84 6.65 -2.39 -0.02 1.83 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.05 1.68 6.52 -2.39 -0.02 1.66 16 38 H 0.00 -0.05 6.05 -2.39 -0.01 -0.06 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.07 2.12 6.43 -2.39 -0.02 2.10 16 42 H 0.06 1.37 6.73 -2.39 -0.02 1.35 16 Total: -1.00 -71.22 317.56 -0.08 -71.30 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.33 Total: 11.61 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.10 Total: -22.33 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.41 Total: -81.81 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -3.13 Total: -27.75 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -71.22 -0.08 -71.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595658415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.012 kcal (2) G-P(sol) polarization free energy of solvation -71.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds