Wall clock time and date at job start Mon Mar 30 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47322 * 2 1 4 4 C 1.46904 * 110.99519 * 297.31908 * 3 2 1 5 5 C 1.50693 * 109.46900 * 292.71324 * 4 3 2 6 6 H 1.07993 * 120.00480 * 355.02503 * 5 4 3 7 7 C 1.37881 * 119.99813 * 175.02877 * 5 4 3 8 8 N 1.31519 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47360 * 59.99597 * 9 7 5 11 11 H 1.48499 * 109.46875 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46779 * 299.99544 * 9 7 5 13 13 C 1.46903 * 110.99888 * 61.27072 * 3 2 1 14 14 C 1.52997 * 109.47358 * 66.04720 * 13 3 2 15 15 O 1.42908 * 109.46572 * 64.99645 * 14 13 3 16 16 C 1.42902 * 113.99811 * 180.02562 * 15 14 13 17 17 C 1.53184 * 109.54120 * 269.56120 * 16 15 14 18 18 C 1.53092 * 109.16200 * 183.15153 * 17 16 15 19 19 O 1.42910 * 109.41728 * 57.60313 * 18 17 16 20 20 C 1.42898 * 114.09526 * 298.84635 * 19 18 17 21 21 C 1.53093 * 109.41901 * 61.15774 * 20 19 18 22 22 H 1.09004 * 109.47378 * 299.42915 * 1 2 3 23 23 H 1.08993 * 109.47159 * 59.43270 * 1 2 3 24 24 H 1.09000 * 109.46972 * 179.43195 * 1 2 3 25 25 H 1.08997 * 109.47085 * 239.99723 * 2 1 3 26 26 H 1.08999 * 109.46852 * 119.99848 * 2 1 3 27 27 H 1.09002 * 109.47152 * 52.71574 * 4 3 2 28 28 H 1.08997 * 109.46879 * 172.71407 * 4 3 2 29 29 H 0.97002 * 119.99529 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47218 * 306.04694 * 13 3 2 31 31 H 1.09004 * 109.46948 * 186.05024 * 13 3 2 32 32 H 1.08999 * 109.47088 * 305.00432 * 14 13 3 33 33 H 1.08991 * 109.47092 * 184.99577 * 14 13 3 34 34 H 1.09008 * 109.61251 * 29.77554 * 16 15 14 35 35 H 1.09001 * 109.51759 * 303.05301 * 17 16 15 36 36 H 1.08998 * 109.52296 * 63.24703 * 17 16 15 37 37 H 1.09007 * 109.48416 * 297.62747 * 18 17 16 38 38 H 1.08995 * 109.48111 * 177.58761 * 18 17 16 39 39 H 1.08993 * 109.48271 * 301.16568 * 20 19 18 40 40 H 1.09002 * 109.48533 * 181.13973 * 20 19 18 41 41 H 1.09004 * 109.52303 * 182.48258 * 21 20 19 42 42 H 1.08999 * 109.52366 * 62.29378 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6017 2.0910 -1.2185 5 6 2.3008 1.4915 -2.4113 6 1 3.0465 0.7231 -2.2703 7 6 1.9886 1.9240 -3.6827 8 7 1.0802 2.8595 -3.8545 9 14 2.8547 1.1803 -5.1613 10 1 2.5931 -0.2808 -5.2051 11 1 2.3428 1.8118 -6.4041 12 1 4.3163 1.4184 -5.0503 13 6 1.5737 2.1010 1.2026 14 6 2.2313 1.4825 2.4379 15 8 3.6444 1.6873 2.3780 16 6 4.3580 1.1442 3.4906 17 6 4.4722 2.2026 4.5921 18 6 5.3050 1.6387 5.7463 19 8 6.5896 1.2467 5.2581 20 6 6.5475 0.2254 4.2595 21 6 5.7646 0.7325 3.0455 22 1 -0.3634 0.5049 0.8951 23 1 -0.3633 0.5226 -0.8848 24 1 -0.3633 -1.0276 -0.0102 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5232 1.9940 -1.3428 28 1 1.8645 3.1456 -1.1356 29 1 0.8609 3.1640 -4.7490 30 1 0.4900 2.0235 1.2907 31 1 1.8579 3.1507 1.1269 32 1 2.0200 0.4135 2.4651 33 1 1.8334 1.9546 3.3361 34 1 3.8276 0.2731 3.8755 35 1 4.9585 3.0927 4.1929 36 1 3.4769 2.4611 4.9535 37 1 4.7979 0.7724 6.1713 38 1 5.4257 2.4025 6.5145 39 1 6.0567 -0.6593 4.6650 40 1 7.5631 -0.0291 3.9566 41 1 5.6936 -0.0604 2.3008 42 1 6.2770 1.5929 2.6151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599308588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:09 Heat of formation + Delta-G solvation = -95.064660 kcal Electronic energy + Delta-G solvation = -20006.766987 eV Core-core repulsion = 16986.855656 eV Total energy + Delta-G solvation = -3019.911331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63452 -37.91485 -36.55009 -32.80258 -32.31517 -31.25732 -29.83365 -28.80943 -25.81380 -24.33718 -23.71840 -23.39739 -21.93935 -20.40564 -19.05467 -17.01727 -16.21411 -16.18156 -15.96027 -15.64658 -14.98072 -14.75480 -14.56592 -14.22529 -13.97715 -13.24407 -13.15289 -12.74620 -12.60824 -12.39567 -11.84212 -11.60734 -11.45026 -11.39992 -11.21270 -11.07005 -10.92193 -10.67034 -10.56720 -10.46228 -10.35466 -10.03531 -9.81637 -9.61543 -9.23539 -9.12368 -8.37256 -7.06439 -5.96980 -3.97313 3.36935 3.40650 3.44176 3.65983 3.86429 4.47051 4.65090 4.73938 4.83932 4.99885 5.01485 5.06269 5.26203 5.31731 5.38253 5.42692 5.50134 5.53502 5.59280 5.72919 5.77414 5.81800 5.90361 5.96067 6.06769 6.10394 6.18569 6.22143 6.38310 6.48362 6.71979 6.92564 7.00540 7.36890 7.48268 7.55198 7.88183 8.18645 8.28557 8.63895 9.10771 9.66353 11.13730 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026145 B = 0.004387 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.705205 B = 6381.377392 C = 6901.238836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 N -0.524 5.524 4 C 0.189 3.811 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.051 3.949 14 C 0.070 3.930 15 O -0.353 6.353 16 C 0.088 3.912 17 C -0.179 4.179 18 C 0.065 3.935 19 O -0.385 6.385 20 C 0.064 3.936 21 C -0.153 4.153 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.001 0.999 28 H 0.024 0.976 29 H 0.260 0.740 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 -4.954 17.805 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.069 4.069 3 N -0.248 5.248 4 C 0.064 3.936 5 C -0.540 4.540 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.078 4.078 14 C -0.007 4.007 15 O -0.272 6.272 16 C 0.029 3.971 17 C -0.217 4.217 18 C -0.012 4.012 19 O -0.303 6.303 20 C -0.012 4.012 21 C -0.191 4.191 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.019 0.981 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.041 -4.671 17.567 18.864 hybrid contribution -1.045 -0.493 -0.808 1.410 sum 3.996 -5.164 16.759 17.987 Atomic orbital electron populations 1.22413 0.99705 1.00913 1.01895 1.21991 0.91744 0.91972 1.01184 1.62302 1.58850 1.01458 1.02208 1.19780 0.94599 0.93789 0.85467 1.21121 1.21486 1.21293 0.90122 0.92003 1.24978 0.95360 0.95323 0.98982 1.69953 1.32359 1.29489 1.22317 0.86588 0.80011 0.79203 0.81758 1.20364 1.21447 1.20188 1.22096 0.95965 0.99112 0.90635 1.22634 0.81570 0.99134 0.97391 1.88149 1.18171 1.78526 1.42328 1.21993 0.93143 0.94530 0.87430 1.22754 1.01082 1.00883 0.97012 1.22539 0.84138 0.99060 0.95482 1.87923 1.28363 1.57240 1.56806 1.22597 1.01248 0.89746 0.87639 1.22265 0.94875 1.03247 0.98674 0.93854 0.91230 0.93502 0.90123 0.93241 0.98095 0.95794 0.92995 0.94050 0.90759 0.93603 0.94331 0.92791 0.90026 0.90948 0.93357 0.88795 0.93259 0.88406 0.89890 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 9.26 37.16 0.34 -3.06 16 2 C 0.06 1.17 5.68 -3.82 -0.02 1.14 16 3 N -0.52 -11.50 4.64 -236.07 -1.10 -12.59 16 4 C 0.19 4.96 4.54 -4.98 -0.02 4.93 16 5 C -0.50 -14.27 8.39 -34.44 -0.29 -14.56 16 6 H 0.06 1.76 7.39 -52.49 -0.39 1.37 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.05 0.93 5.12 -3.82 -0.02 0.91 16 14 C 0.07 1.06 5.81 37.16 0.22 1.28 16 15 O -0.35 -5.88 9.94 -35.23 -0.35 -6.23 16 16 C 0.09 1.12 2.70 -26.55 -0.07 1.05 16 17 C -0.18 -1.98 5.76 -26.59 -0.15 -2.13 16 18 C 0.06 0.62 6.84 37.20 0.25 0.87 16 19 O -0.38 -4.45 10.77 -35.23 -0.38 -4.83 16 20 C 0.06 0.65 6.84 37.21 0.25 0.90 16 21 C -0.15 -1.85 5.79 -26.59 -0.15 -2.01 16 22 H 0.04 0.70 6.33 -51.93 -0.33 0.37 16 23 H 0.07 1.45 6.28 -51.93 -0.33 1.13 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.73 6.98 -51.93 -0.36 1.37 16 26 H 0.05 0.85 6.32 -51.93 -0.33 0.53 16 27 H 0.00 0.04 6.02 -51.93 -0.31 -0.28 16 28 H 0.02 0.68 7.91 -51.93 -0.41 0.27 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 30 H 0.04 0.72 6.05 -51.93 -0.31 0.40 16 31 H 0.07 1.42 7.92 -51.93 -0.41 1.01 16 32 H 0.05 0.67 6.26 -51.93 -0.32 0.35 16 33 H 0.04 0.49 7.99 -51.93 -0.42 0.08 16 34 H 0.05 0.63 7.79 -51.92 -0.40 0.22 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.72 7.99 -51.93 -0.42 0.31 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -31.14 326.37 -8.21 -39.35 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.26 Total: -2.07 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 0.24 Total: -9.22 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.36 Total: -38.87 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.73 Total: -11.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.14 -8.21 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599308588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.710 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds