Wall clock time and date at job start Mon Mar 30 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47322 * 2 1 4 4 C 1.46904 * 110.99519 * 297.31908 * 3 2 1 5 5 C 1.50693 * 109.46900 * 292.71324 * 4 3 2 6 6 H 1.07993 * 120.00480 * 355.02503 * 5 4 3 7 7 C 1.37881 * 119.99813 * 175.02877 * 5 4 3 8 8 N 1.31519 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47360 * 59.99597 * 9 7 5 11 11 H 1.48499 * 109.46875 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46779 * 299.99544 * 9 7 5 13 13 C 1.46903 * 110.99888 * 61.27072 * 3 2 1 14 14 C 1.52997 * 109.47358 * 66.04720 * 13 3 2 15 15 O 1.42908 * 109.46572 * 64.99645 * 14 13 3 16 16 C 1.42902 * 113.99811 * 180.02562 * 15 14 13 17 17 C 1.53184 * 109.54120 * 269.56120 * 16 15 14 18 18 C 1.53092 * 109.16200 * 183.15153 * 17 16 15 19 19 O 1.42910 * 109.41728 * 57.60313 * 18 17 16 20 20 C 1.42898 * 114.09526 * 298.84635 * 19 18 17 21 21 C 1.53093 * 109.41901 * 61.15774 * 20 19 18 22 22 H 1.09004 * 109.47378 * 299.42915 * 1 2 3 23 23 H 1.08993 * 109.47159 * 59.43270 * 1 2 3 24 24 H 1.09000 * 109.46972 * 179.43195 * 1 2 3 25 25 H 1.08997 * 109.47085 * 239.99723 * 2 1 3 26 26 H 1.08999 * 109.46852 * 119.99848 * 2 1 3 27 27 H 1.09002 * 109.47152 * 52.71574 * 4 3 2 28 28 H 1.08997 * 109.46879 * 172.71407 * 4 3 2 29 29 H 0.97002 * 119.99529 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47218 * 306.04694 * 13 3 2 31 31 H 1.09004 * 109.46948 * 186.05024 * 13 3 2 32 32 H 1.08999 * 109.47088 * 305.00432 * 14 13 3 33 33 H 1.08991 * 109.47092 * 184.99577 * 14 13 3 34 34 H 1.09008 * 109.61251 * 29.77554 * 16 15 14 35 35 H 1.09001 * 109.51759 * 303.05301 * 17 16 15 36 36 H 1.08998 * 109.52296 * 63.24703 * 17 16 15 37 37 H 1.09007 * 109.48416 * 297.62747 * 18 17 16 38 38 H 1.08995 * 109.48111 * 177.58761 * 18 17 16 39 39 H 1.08993 * 109.48271 * 301.16568 * 20 19 18 40 40 H 1.09002 * 109.48533 * 181.13973 * 20 19 18 41 41 H 1.09004 * 109.52303 * 182.48258 * 21 20 19 42 42 H 1.08999 * 109.52366 * 62.29378 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6017 2.0910 -1.2185 5 6 2.3008 1.4915 -2.4113 6 1 3.0465 0.7231 -2.2703 7 6 1.9886 1.9240 -3.6827 8 7 1.0802 2.8595 -3.8545 9 14 2.8547 1.1803 -5.1613 10 1 2.5931 -0.2808 -5.2051 11 1 2.3428 1.8118 -6.4041 12 1 4.3163 1.4184 -5.0503 13 6 1.5737 2.1010 1.2026 14 6 2.2313 1.4825 2.4379 15 8 3.6444 1.6873 2.3780 16 6 4.3580 1.1442 3.4906 17 6 4.4722 2.2026 4.5921 18 6 5.3050 1.6387 5.7463 19 8 6.5896 1.2467 5.2581 20 6 6.5475 0.2254 4.2595 21 6 5.7646 0.7325 3.0455 22 1 -0.3634 0.5049 0.8951 23 1 -0.3633 0.5226 -0.8848 24 1 -0.3633 -1.0276 -0.0102 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5232 1.9940 -1.3428 28 1 1.8645 3.1456 -1.1356 29 1 0.8609 3.1640 -4.7490 30 1 0.4900 2.0235 1.2907 31 1 1.8579 3.1507 1.1269 32 1 2.0200 0.4135 2.4651 33 1 1.8334 1.9546 3.3361 34 1 3.8276 0.2731 3.8755 35 1 4.9585 3.0927 4.1929 36 1 3.4769 2.4611 4.9535 37 1 4.7979 0.7724 6.1713 38 1 5.4257 2.4025 6.5145 39 1 6.0567 -0.6593 4.6650 40 1 7.5631 -0.0291 3.9566 41 1 5.6936 -0.0604 2.3008 42 1 6.2770 1.5929 2.6151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599308588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:09 Heat of formation + Delta-G solvation = -116.839801 kcal Electronic energy + Delta-G solvation = -20007.711228 eV Core-core repulsion = 16986.855656 eV Total energy + Delta-G solvation = -3020.855572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56087 -39.30562 -37.88229 -34.78919 -33.50784 -32.06780 -31.27835 -30.58653 -27.65586 -25.31163 -25.06092 -24.56057 -23.60857 -21.32871 -20.66034 -18.35656 -18.04839 -17.23631 -17.04738 -16.91676 -16.43354 -16.19774 -15.79744 -15.52933 -15.20077 -14.67797 -14.43105 -14.11887 -14.05595 -13.62027 -13.27529 -13.11649 -12.94005 -12.78874 -12.69385 -12.47330 -12.34922 -12.26762 -12.08293 -11.85401 -11.75228 -11.37022 -11.29471 -11.15282 -10.63486 -10.58028 -10.30619 -8.82297 -8.17481 -6.26890 1.40124 1.43573 1.51326 2.41396 2.71690 2.99430 3.14441 3.38799 3.80849 3.81971 4.02137 4.09070 4.15547 4.25528 4.28385 4.31712 4.38326 4.49033 4.53532 4.56030 4.63070 4.71927 4.77686 4.78243 4.87285 4.92201 5.01409 5.03246 5.08022 5.18987 5.23401 5.26403 5.39329 5.51673 5.69210 6.11140 6.24639 6.41106 6.46589 6.74722 6.90165 7.42307 8.92717 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026145 B = 0.004387 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.705205 B = 6381.377392 C = 6901.238836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 N -0.538 5.538 4 C 0.205 3.795 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.048 3.952 14 C 0.078 3.922 15 O -0.389 6.389 16 C 0.081 3.919 17 C -0.175 4.175 18 C 0.064 3.936 19 O -0.404 6.404 20 C 0.068 3.932 21 C -0.153 4.153 22 H 0.062 0.938 23 H 0.031 0.969 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.081 0.919 27 H -0.018 1.018 28 H -0.010 1.010 29 H 0.263 0.737 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 -6.711 19.405 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.067 4.067 3 N -0.261 5.261 4 C 0.078 3.922 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.197 1.197 13 C -0.080 4.080 14 C 0.001 3.999 15 O -0.308 6.308 16 C 0.023 3.977 17 C -0.213 4.213 18 C -0.013 4.013 19 O -0.323 6.323 20 C -0.008 4.008 21 C -0.191 4.191 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.000 1.000 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.298 -6.440 19.196 20.929 hybrid contribution -1.126 0.074 -1.246 1.681 sum 4.172 -6.366 17.950 19.497 Atomic orbital electron populations 1.22290 0.98310 1.02337 1.00952 1.22002 0.92898 0.90380 1.01449 1.62180 1.59630 1.02574 1.01753 1.19400 0.93122 0.92248 0.87385 1.21410 1.21593 1.21320 0.91351 0.92443 1.25870 0.95982 0.95615 1.02085 1.70080 1.33689 1.30716 1.23135 0.85494 0.78790 0.78818 0.77864 1.19125 1.20776 1.19661 1.22176 0.97108 0.98119 0.90572 1.22563 0.81146 0.99730 0.96467 1.88109 1.18919 1.79324 1.44474 1.22226 0.92959 0.95590 0.86883 1.22708 1.01973 0.99581 0.97004 1.22688 0.83291 1.00282 0.94991 1.87905 1.29621 1.57772 1.56992 1.22659 1.01826 0.89894 0.86463 1.22279 0.94982 1.02178 0.99682 0.91911 0.95007 0.90792 0.92636 0.90087 1.00049 0.99216 0.92799 0.92845 0.92661 0.92361 0.91262 0.90899 0.92169 0.89600 0.91343 0.87275 0.91246 0.87267 0.90364 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.23 9.26 71.98 0.67 -5.57 16 2 C 0.06 2.32 5.68 86.30 0.49 2.81 16 3 N -0.54 -23.85 4.64 -900.79 -4.18 -28.03 16 4 C 0.20 11.21 4.54 85.55 0.39 11.60 16 5 C -0.52 -30.30 8.39 25.60 0.21 -30.08 16 6 H 0.06 3.33 7.39 -2.91 -0.02 3.31 16 7 C 0.00 0.12 5.46 84.65 0.46 0.59 16 8 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.05 1.76 5.12 86.30 0.44 2.20 16 14 C 0.08 2.19 5.81 71.98 0.42 2.61 16 15 O -0.39 -12.56 9.94 -148.98 -1.48 -14.04 16 16 C 0.08 1.93 2.70 30.71 0.08 2.01 16 17 C -0.17 -3.54 5.76 30.69 0.18 -3.36 16 18 C 0.06 1.05 6.84 72.01 0.49 1.54 16 19 O -0.40 -8.54 10.77 -148.98 -1.60 -10.14 16 20 C 0.07 1.23 6.84 72.01 0.49 1.72 16 21 C -0.15 -3.60 5.79 30.68 0.18 -3.42 16 22 H 0.06 1.90 6.33 -2.38 -0.02 1.89 16 23 H 0.03 1.33 6.28 -2.39 -0.02 1.31 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 25 H 0.06 2.39 6.98 -2.39 -0.02 2.37 16 26 H 0.08 2.59 6.32 -2.39 -0.02 2.57 16 27 H -0.02 -1.04 6.02 -2.39 -0.01 -1.06 16 28 H -0.01 -0.62 7.91 -2.39 -0.02 -0.64 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.05 1.80 6.05 -2.38 -0.01 1.78 16 31 H 0.05 2.18 7.92 -2.39 -0.02 2.16 16 32 H 0.06 1.50 6.26 -2.39 -0.01 1.48 16 33 H 0.07 1.55 7.99 -2.39 -0.02 1.53 16 34 H 0.07 1.46 7.79 -2.38 -0.02 1.44 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.49 7.99 -2.39 -0.02 1.47 16 37 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -69.03 326.37 0.52 -68.51 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.97 Total: 10.78 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 4.50 Total: -17.35 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.90 Total: -85.17 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -3.09 Total: -24.18 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.03 0.52 -68.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599308588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.334 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds