Wall clock time and date at job start Mon Mar 30 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47030 * 2 1 4 4 C 1.46899 * 111.00371 * 287.99857 * 3 2 1 5 5 C 1.50698 * 109.47450 * 160.36114 * 4 3 2 6 6 H 1.07996 * 119.99934 * 4.65313 * 5 4 3 7 7 C 1.37882 * 119.99795 * 184.66137 * 5 4 3 8 8 N 1.31514 * 119.99917 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99629 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47195 * 89.99935 * 9 7 5 11 11 H 1.48504 * 109.47146 * 209.99868 * 9 7 5 12 12 H 1.48498 * 109.47199 * 329.99534 * 9 7 5 13 13 C 1.46903 * 110.99900 * 164.04450 * 3 2 1 14 14 C 1.52997 * 109.47255 * 293.95077 * 13 3 2 15 15 H 1.09006 * 109.47007 * 59.99970 * 14 13 3 16 16 O 1.42900 * 109.47276 * 300.00234 * 14 13 3 17 17 C 1.52998 * 109.47200 * 180.02562 * 14 13 3 18 18 C 1.52998 * 109.47081 * 185.00458 * 17 14 13 19 19 O 1.42901 * 112.85309 * 53.80172 * 18 17 14 20 20 C 1.53783 * 113.61523 * 184.99673 * 18 17 14 21 21 C 1.53781 * 87.08214 * 140.06212 * 20 18 17 22 22 C 1.53782 * 87.17407 * 334.52792 * 21 20 18 23 23 H 1.09004 * 109.47181 * 59.46148 * 1 2 3 24 24 H 1.09002 * 109.47100 * 179.46454 * 1 2 3 25 25 H 1.09000 * 109.47211 * 299.46260 * 1 2 3 26 26 H 1.08997 * 109.47160 * 240.00167 * 2 1 3 27 27 H 1.09004 * 109.47223 * 119.99904 * 2 1 3 28 28 H 1.09006 * 109.47060 * 280.36567 * 4 3 2 29 29 H 1.09001 * 109.46853 * 40.35651 * 4 3 2 30 30 H 0.97003 * 119.99432 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.46772 * 173.95528 * 13 3 2 32 32 H 1.08997 * 109.47283 * 53.95787 * 13 3 2 33 33 H 0.96694 * 114.00451 * 299.99903 * 16 14 13 34 34 H 1.08993 * 109.47377 * 64.99847 * 17 14 13 35 35 H 1.09002 * 109.46868 * 304.99877 * 17 14 13 36 36 H 0.96701 * 114.00233 * 181.53184 * 19 18 17 37 37 H 1.09001 * 113.61276 * 25.51612 * 20 18 17 38 38 H 1.08997 * 113.69366 * 254.62177 * 20 18 17 39 39 H 1.09003 * 113.61378 * 89.11361 * 21 20 18 40 40 H 1.08992 * 113.61785 * 219.93652 * 21 20 18 41 41 H 1.08999 * 113.61551 * 140.02051 * 22 21 20 42 42 H 1.08997 * 113.61412 * 270.92273 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7956 2.0226 -1.3043 5 6 1.8469 3.5205 -1.1467 6 1 2.1020 3.9545 -0.1912 7 6 1.5680 4.3368 -2.2223 8 7 1.2578 3.8082 -3.3859 9 14 1.6310 6.1935 -2.0267 10 1 3.0013 6.6772 -2.3320 11 1 0.6641 6.8228 -2.9617 12 1 1.2774 6.5564 -0.6308 13 6 3.4383 1.4418 0.3770 14 6 3.5972 0.9996 1.8330 15 1 3.2322 -0.0214 1.9446 16 8 2.8440 1.8699 2.6801 17 6 5.0747 1.0594 2.2259 18 6 5.2497 0.4999 3.6391 19 8 4.6945 -0.8081 3.7908 20 6 6.6842 0.6265 4.1785 21 6 6.0580 0.9917 5.5348 22 6 4.8296 1.4812 4.7499 23 1 -0.3634 0.5222 -0.8851 24 1 -0.3633 -1.0276 -0.0096 25 1 -0.3633 0.5055 0.8948 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5698 1.7040 -2.0023 29 1 0.8180 1.7309 -1.6882 30 1 1.0619 4.3826 -4.1427 31 1 3.8032 2.4629 0.2655 32 1 4.0128 0.7781 -0.2691 33 1 3.1150 2.7968 2.6323 34 1 5.4160 2.0942 2.1999 35 1 5.6613 0.4656 1.5248 36 1 4.7752 -1.1684 4.6845 37 1 7.2506 1.4404 3.7259 38 1 7.2325 -0.3154 4.1902 39 1 5.8555 0.1284 6.1688 40 1 6.5864 1.7875 6.0596 41 1 3.8804 1.2280 5.2221 42 1 4.8898 2.5283 4.4532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599308844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:12 Heat of formation + Delta-G solvation = -108.091652 kcal Electronic energy + Delta-G solvation = -20307.275794 eV Core-core repulsion = 17286.799571 eV Total energy + Delta-G solvation = -3020.476223 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92899 -39.17090 -37.03219 -35.17678 -34.70826 -32.51800 -31.44910 -29.36127 -27.02859 -26.53478 -24.50720 -23.97859 -22.29795 -21.29145 -20.51370 -18.56379 -17.68992 -17.43968 -16.88222 -16.49196 -16.25487 -15.86105 -15.72572 -15.11677 -14.91261 -14.52923 -14.26832 -14.06481 -13.86931 -13.40973 -13.20775 -13.13494 -12.91640 -12.72384 -12.58254 -12.55324 -12.27506 -12.08883 -11.86491 -11.77368 -11.71763 -11.45311 -11.28736 -11.12222 -10.62601 -10.55149 -10.27549 -8.92384 -8.16748 -6.26620 1.41680 1.43854 1.55370 2.42212 3.10203 3.18982 3.30425 3.63336 3.65381 3.79024 3.83354 3.99815 4.08836 4.22367 4.34372 4.45089 4.51386 4.59229 4.69604 4.77167 4.82864 4.87049 4.90935 4.94113 5.00000 5.05762 5.09308 5.18299 5.23139 5.25178 5.27468 5.34503 5.42428 5.52426 5.69709 6.11668 6.44347 6.66520 6.88758 6.90115 7.04962 7.42628 8.94013 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.005228 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.510427 B = 5354.458729 C = 6131.145672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.048 3.952 3 N -0.530 5.530 4 C 0.204 3.796 5 C -0.514 4.514 6 H 0.064 0.936 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.032 3.968 14 C 0.134 3.866 15 H 0.087 0.913 16 O -0.554 6.554 17 C -0.128 4.128 18 C 0.115 3.885 19 O -0.558 6.558 20 C -0.165 4.165 21 C -0.141 4.141 22 C -0.155 4.155 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.012 0.988 27 H 0.080 0.920 28 H -0.046 1.046 29 H 0.009 0.991 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.020 0.980 33 H 0.375 0.625 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.388 0.612 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.150 -6.361 16.742 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.080 4.080 3 N -0.254 5.254 4 C 0.078 3.922 5 C -0.552 4.552 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.579 5.579 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.188 1.188 13 C -0.097 4.097 14 C 0.074 3.926 15 H 0.105 0.895 16 O -0.359 6.359 17 C -0.166 4.166 18 C 0.074 3.926 19 O -0.365 6.365 20 C -0.203 4.203 21 C -0.178 4.178 22 C -0.193 4.193 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.098 0.902 28 H -0.028 1.028 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.223 0.777 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.238 0.762 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.390 -6.539 16.443 20.033 hybrid contribution 0.727 0.778 -0.902 1.396 sum 10.117 -5.761 15.541 19.418 Atomic orbital electron populations 1.21667 0.94806 1.01471 1.01272 1.22126 0.96779 0.89711 0.99404 1.62036 1.16995 1.15610 1.30731 1.19463 0.93789 0.94270 0.84680 1.21452 1.45808 0.91625 0.96348 0.91787 1.25933 0.94972 1.04192 0.94769 1.70102 1.48746 1.37126 1.01941 0.85373 0.77988 0.78909 0.78282 1.19752 1.21063 1.18763 1.22789 0.88986 1.00914 0.97011 1.21631 0.90424 0.94004 0.86514 0.89550 1.86536 1.62552 1.21603 1.65192 1.22157 0.96713 1.02098 0.95620 1.22183 0.93202 0.83271 0.93955 1.86453 1.82415 1.31119 1.36551 1.23696 0.96462 1.02890 0.97221 1.22905 0.96841 1.01950 0.96139 1.23614 0.98405 1.00241 0.97039 0.94921 0.90489 0.92571 0.96985 0.90156 1.02835 0.97267 0.92840 0.91389 0.96222 0.77737 0.88932 0.90873 0.76244 0.88810 0.90658 0.89172 0.90287 0.91727 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.99 71.98 0.72 -4.26 16 2 C 0.05 1.87 5.55 86.30 0.48 2.35 16 3 N -0.53 -23.80 4.25 -900.79 -3.83 -27.62 16 4 C 0.20 11.23 4.59 85.56 0.39 11.63 16 5 C -0.51 -29.47 8.61 25.60 0.22 -29.24 16 6 H 0.06 3.56 7.66 -2.91 -0.02 3.54 16 7 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 8 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 9 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.03 1.22 4.45 86.30 0.38 1.60 16 14 C 0.13 4.14 2.78 30.59 0.09 4.23 16 15 H 0.09 2.91 5.68 -2.38 -0.01 2.90 16 16 O -0.55 -17.66 11.86 -148.98 -1.77 -19.42 16 17 C -0.13 -3.09 4.61 30.59 0.14 -2.95 16 18 C 0.11 2.36 1.41 -10.17 -0.01 2.35 16 19 O -0.56 -12.48 12.71 -148.98 -1.89 -14.37 16 20 C -0.17 -2.59 7.45 31.12 0.23 -2.36 16 21 C -0.14 -1.93 7.75 31.12 0.24 -1.69 16 22 C -0.16 -2.87 6.20 31.21 0.19 -2.68 16 23 H 0.03 1.36 6.52 -2.39 -0.02 1.34 16 24 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.01 0.48 8.05 -2.39 -0.02 0.46 16 27 H 0.08 2.83 5.94 -2.39 -0.01 2.82 16 28 H -0.05 -2.75 8.00 -2.38 -0.02 -2.77 16 29 H 0.01 0.55 6.24 -2.39 -0.01 0.54 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.07 2.76 7.32 -2.38 -0.02 2.75 16 32 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 33 H 0.38 10.31 9.04 -74.06 -0.67 9.64 16 34 H 0.09 1.98 8.06 -2.39 -0.02 1.97 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.39 5.61 8.32 -74.06 -0.62 4.99 16 37 H 0.09 1.39 8.10 -2.39 -0.02 1.37 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.00 7.79 -2.39 -0.02 0.98 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.62 8.05 -2.39 -0.02 1.60 16 Total: -1.00 -68.37 331.86 -1.93 -70.30 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.28 Total: 22.35 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 3.53 Total: -20.63 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -3.54 Total: -84.78 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -3.66 Total: -33.80 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.37 -1.93 -70.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599308844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.793 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds