Wall clock time and date at job start Mon Mar 30 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47743 * 2 1 4 4 C 1.50694 * 109.47215 * 239.99824 * 2 1 3 5 5 H 1.08009 * 119.99866 * 245.35849 * 4 2 1 6 6 C 1.37876 * 120.00332 * 65.36196 * 4 2 1 7 7 N 1.31515 * 120.00128 * 184.92585 * 6 4 2 8 8 Si 1.86804 * 119.99579 * 5.19712 * 6 4 2 9 9 H 1.48498 * 109.46962 * 269.72718 * 8 6 4 10 10 H 1.48489 * 109.47324 * 29.72751 * 8 6 4 11 11 H 1.48506 * 109.46838 * 149.73060 * 8 6 4 12 12 N 1.46900 * 109.47104 * 119.99721 * 2 1 3 13 13 C 1.46902 * 110.99776 * 58.95335 * 12 2 1 14 14 C 1.46903 * 111.00055 * 295.00415 * 12 2 1 15 15 C 1.53009 * 109.47152 * 189.99891 * 14 12 2 16 16 O 1.42900 * 109.46942 * 64.99690 * 15 14 12 17 17 C 1.42899 * 113.99429 * 180.02562 * 16 15 14 18 18 C 1.53177 * 109.54271 * 269.55006 * 17 16 15 19 19 C 1.53093 * 109.16212 * 183.15437 * 18 17 16 20 20 O 1.42897 * 109.41536 * 57.61335 * 19 18 17 21 21 C 1.42906 * 114.09889 * 298.84140 * 20 19 18 22 22 C 1.53091 * 109.41393 * 61.15652 * 21 20 19 23 23 H 1.09000 * 109.47839 * 294.89706 * 1 2 3 24 24 H 1.09003 * 109.46954 * 54.89477 * 1 2 3 25 25 H 1.08994 * 109.47526 * 174.89098 * 1 2 3 26 26 H 0.96993 * 119.99870 * 355.26522 * 7 6 4 27 27 H 1.08995 * 109.47277 * 60.00398 * 13 12 2 28 28 H 1.09008 * 109.47313 * 180.02562 * 13 12 2 29 29 H 1.08997 * 109.47116 * 300.00060 * 13 12 2 30 30 H 1.09000 * 109.46604 * 309.99517 * 14 12 2 31 31 H 1.08996 * 109.47211 * 69.99887 * 14 12 2 32 32 H 1.08996 * 109.46636 * 184.99984 * 15 14 12 33 33 H 1.09002 * 109.46564 * 304.99501 * 15 14 12 34 34 H 1.09000 * 109.55053 * 29.82305 * 17 16 15 35 35 H 1.08997 * 109.52526 * 303.06393 * 18 17 16 36 36 H 1.09001 * 109.51851 * 63.25191 * 18 17 16 37 37 H 1.09003 * 109.48239 * 297.62922 * 19 18 17 38 38 H 1.09004 * 109.47875 * 177.60009 * 19 18 17 39 39 H 1.08999 * 109.47872 * 301.17403 * 21 20 19 40 40 H 1.09001 * 109.48911 * 181.14686 * 21 20 19 41 41 H 1.09000 * 109.51914 * 182.48637 * 22 21 20 42 42 H 1.09002 * 109.52138 * 62.30009 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5800 -1.6363 -1.1336 6 6 1.7928 -0.1785 -2.4797 7 7 2.1454 -0.8455 -3.5569 8 14 0.9744 1.4928 -2.6419 9 1 -0.4985 1.3179 -2.7135 10 1 1.3169 2.3282 -1.4630 11 1 1.4542 2.1610 -3.8783 12 7 2.0196 -0.6924 1.1995 13 6 1.5282 -2.0760 1.2460 14 6 1.6485 0.0392 2.4181 15 6 2.3787 -0.5661 3.6187 16 8 3.7858 -0.3657 3.4710 17 6 4.5644 -0.8973 4.5449 18 6 4.7473 0.1740 5.6244 19 6 5.6474 -0.3782 6.7329 20 8 6.8992 -0.7793 6.1726 21 6 6.7949 -1.8125 5.1909 22 6 5.9408 -1.3181 4.0205 23 1 -0.3635 0.4326 0.9321 24 1 -0.3633 0.5910 -0.8408 25 1 -0.3634 -1.0235 -0.0915 26 1 2.6349 -1.6785 -3.4730 27 1 1.8761 -2.6150 0.3649 28 1 1.9051 -2.5655 2.1441 29 1 0.4384 -2.0741 1.2640 30 1 1.9296 1.0871 2.3124 31 1 0.5721 -0.0345 2.5726 32 1 2.0367 -0.0823 4.5336 33 1 2.1673 -1.6342 3.6717 34 1 4.0562 -1.7626 4.9704 35 1 5.2101 1.0579 5.1858 36 1 3.7761 0.4395 6.0422 37 1 5.1653 -1.2379 7.1983 38 1 5.8157 0.3945 7.4831 39 1 6.3278 -2.6910 5.6361 40 1 7.7898 -2.0733 4.8302 41 1 5.8233 -2.1196 3.2912 42 1 6.4278 -0.4642 3.5494 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599313268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:56 Heat of formation + Delta-G solvation = -113.366847 kcal Electronic energy + Delta-G solvation = -20137.270920 eV Core-core repulsion = 17116.565947 eV Total energy + Delta-G solvation = -3020.704973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59087 -39.41285 -38.04252 -34.93266 -33.54783 -32.09752 -31.83815 -29.67080 -26.90504 -26.75248 -25.20662 -24.56283 -22.91625 -21.35256 -20.84351 -19.41277 -18.04769 -17.37785 -17.02626 -16.93065 -16.25727 -15.85036 -15.75360 -15.46929 -15.30601 -14.70414 -14.56537 -14.37719 -13.96697 -13.71010 -13.39119 -13.25002 -13.16212 -12.93726 -12.53697 -12.36012 -12.31902 -12.15339 -12.06024 -11.75773 -11.58148 -11.45814 -11.32716 -10.83101 -10.66416 -10.55525 -10.34155 -8.89201 -8.68813 -6.33052 1.41233 1.53163 1.69080 2.48255 2.68720 2.96394 3.11755 3.29355 3.77278 3.78899 3.99106 4.06187 4.15083 4.24195 4.28138 4.35051 4.39122 4.48943 4.51120 4.55743 4.58545 4.64799 4.68835 4.75056 4.78596 4.82978 4.84814 4.93831 5.03312 5.05295 5.14668 5.18879 5.23576 5.48537 5.81608 6.06962 6.21728 6.30208 6.40180 6.64720 6.74953 7.45847 8.69749 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.032397 B = 0.004353 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.067000 B = 6430.780775 C = 6670.838261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.180 3.820 3 H 0.030 0.970 4 C -0.573 4.573 5 H 0.022 0.978 6 C -0.029 4.029 7 N -0.950 5.950 8 Si 1.094 2.906 9 H -0.262 1.262 10 H -0.255 1.255 11 H -0.294 1.294 12 N -0.538 5.538 13 C 0.042 3.958 14 C 0.049 3.951 15 C 0.072 3.928 16 O -0.390 6.390 17 C 0.082 3.918 18 C -0.173 4.173 19 C 0.063 3.937 20 O -0.403 6.403 21 C 0.069 3.931 22 C -0.154 4.154 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.249 0.751 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 0.500 23.089 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.071 3.929 3 H 0.048 0.952 4 C -0.611 4.611 5 H 0.041 0.959 6 C -0.225 4.225 7 N -0.588 5.588 8 Si 0.917 3.083 9 H -0.188 1.188 10 H -0.179 1.179 11 H -0.221 1.221 12 N -0.262 5.262 13 C -0.106 4.106 14 C -0.079 4.079 15 C -0.004 4.004 16 O -0.309 6.309 17 C 0.024 3.976 18 C -0.211 4.211 19 C -0.014 4.014 20 O -0.322 6.322 21 C -0.008 4.008 22 C -0.192 4.192 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.777 1.730 21.885 22.025 hybrid contribution -0.371 -1.708 0.413 1.797 sum 1.405 0.021 22.298 22.343 Atomic orbital electron populations 1.22605 0.99493 1.00980 1.00427 1.19650 0.90347 0.94383 0.88513 0.95186 1.22262 1.37311 1.08848 0.92703 0.95921 1.27143 0.97203 1.06389 0.91799 1.70940 1.39391 1.17085 1.31402 0.83397 0.76552 0.72019 0.76324 1.18804 1.17948 1.22074 1.62043 1.60004 1.02365 1.01769 1.22167 0.97186 0.90462 1.00757 1.22234 0.97395 0.98494 0.89806 1.22647 0.81060 0.99672 0.97067 1.88099 1.17752 1.79921 1.45153 1.22213 0.91990 0.95684 0.87728 1.22692 1.01758 0.99423 0.97190 1.22707 0.83819 1.00301 0.94545 1.87906 1.30787 1.56767 1.56750 1.22642 1.01213 0.89718 0.87227 1.22283 0.95235 1.02082 0.99615 0.91954 0.93812 0.93504 0.94188 0.94454 0.91061 0.95550 0.91346 0.92147 0.90837 0.92933 0.91120 0.91980 0.89358 0.91442 0.87111 0.91344 0.87351 0.90829 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.27 8.04 71.98 0.58 -6.69 16 2 C 0.18 8.58 1.92 44.16 0.08 8.66 16 3 H 0.03 1.50 6.53 -2.39 -0.02 1.48 16 4 C -0.57 -33.40 8.41 25.60 0.22 -33.19 16 5 H 0.02 1.47 6.78 -2.91 -0.02 1.45 16 6 C -0.03 -1.74 5.43 84.65 0.46 -1.28 16 7 N -0.95 -61.37 13.70 21.45 0.29 -61.07 16 8 Si 1.09 51.67 25.28 68.60 1.73 53.41 16 9 H -0.26 -11.33 6.82 99.48 0.68 -10.65 16 10 H -0.25 -10.90 6.35 99.48 0.63 -10.27 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 12 N -0.54 -22.59 4.69 -901.47 -4.23 -26.81 16 13 C 0.04 1.64 8.70 127.69 1.11 2.75 16 14 C 0.05 1.57 4.79 86.31 0.41 1.98 16 15 C 0.07 1.90 5.81 71.99 0.42 2.32 16 16 O -0.39 -12.17 9.94 -148.98 -1.48 -13.66 16 17 C 0.08 1.91 2.70 30.71 0.08 2.00 16 18 C -0.17 -3.33 5.76 30.68 0.18 -3.15 16 19 C 0.06 1.00 6.84 72.01 0.49 1.49 16 20 O -0.40 -8.46 10.77 -148.98 -1.60 -10.07 16 21 C 0.07 1.26 6.84 72.01 0.49 1.75 16 22 C -0.15 -3.68 5.79 30.69 0.18 -3.50 16 23 H 0.06 2.11 6.51 -2.39 -0.02 2.09 16 24 H 0.04 1.82 4.41 -2.39 -0.01 1.81 16 25 H 0.05 1.96 6.68 -2.39 -0.02 1.94 16 26 H 0.25 16.39 8.72 -92.71 -0.81 15.58 16 27 H 0.04 1.69 6.43 -2.39 -0.02 1.68 16 28 H 0.07 2.30 6.21 -2.38 -0.01 2.29 16 29 H 0.03 0.95 6.40 -2.39 -0.02 0.93 16 30 H 0.07 2.29 8.00 -2.39 -0.02 2.27 16 31 H 0.06 1.70 6.82 -2.39 -0.02 1.69 16 32 H 0.07 1.47 7.99 -2.39 -0.02 1.45 16 33 H 0.05 1.31 6.21 -2.39 -0.01 1.30 16 34 H 0.07 1.41 7.79 -2.39 -0.02 1.40 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.40 7.99 -2.39 -0.02 1.38 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -71.02 316.16 0.26 -70.76 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.84 Total: 14.30 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 4.70 Total: -26.85 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -3.93 Total: -87.89 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -3.09 Total: -23.72 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 1.73 Total: 53.41 kcal Total: -71.02 0.26 -70.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599313268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.611 kcal (2) G-P(sol) polarization free energy of solvation -71.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds