Wall clock time and date at job start Mon Mar 30 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 C 1.50700 * 109.47300 * 120.00925 * 2 1 3 5 5 H 1.07999 * 119.99720 * 119.99949 * 4 2 1 6 6 C 1.37874 * 119.99650 * 299.99778 * 4 2 1 7 7 N 1.31513 * 120.00583 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99597 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47188 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47075 * 119.99777 * 8 6 4 11 11 H 1.48504 * 109.46689 * 239.99865 * 8 6 4 12 12 N 1.46905 * 109.46645 * 240.00632 * 2 1 3 13 13 C 1.46900 * 110.99850 * 183.95078 * 12 2 1 14 14 C 1.46906 * 111.00051 * 60.00111 * 12 2 1 15 15 C 1.52993 * 109.47378 * 189.99991 * 14 12 2 16 16 O 1.42903 * 109.47204 * 64.99537 * 15 14 12 17 17 C 1.42903 * 113.99770 * 180.02562 * 16 15 14 18 18 C 1.53177 * 109.54125 * 269.55567 * 17 16 15 19 19 C 1.53091 * 109.16276 * 183.15552 * 18 17 16 20 20 O 1.42904 * 109.41571 * 57.60706 * 19 18 17 21 21 C 1.42899 * 114.09950 * 298.84354 * 20 19 18 22 22 C 1.53099 * 109.41360 * 61.15753 * 21 20 19 23 23 H 1.09001 * 109.46467 * 299.99248 * 1 2 3 24 24 H 1.08997 * 109.47011 * 59.98773 * 1 2 3 25 25 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 26 26 H 0.96997 * 120.00167 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47030 * 296.04770 * 13 12 2 28 28 H 1.08999 * 109.46702 * 56.04909 * 13 12 2 29 29 H 1.08996 * 109.46890 * 176.04778 * 13 12 2 30 30 H 1.09004 * 109.47040 * 309.99779 * 14 12 2 31 31 H 1.09000 * 109.47033 * 69.99731 * 14 12 2 32 32 H 1.08997 * 109.47645 * 185.00377 * 15 14 12 33 33 H 1.09005 * 109.46770 * 304.99958 * 15 14 12 34 34 H 1.08991 * 109.54668 * 29.82416 * 17 16 15 35 35 H 1.09005 * 109.52582 * 303.06256 * 18 17 16 36 36 H 1.09001 * 109.52446 * 63.25185 * 18 17 16 37 37 H 1.09003 * 109.47965 * 297.62385 * 19 18 17 38 38 H 1.08996 * 109.48451 * 177.59304 * 19 18 17 39 39 H 1.08994 * 109.48197 * 301.17467 * 21 20 19 40 40 H 1.09001 * 109.49191 * 181.14274 * 21 20 19 41 41 H 1.08996 * 109.51718 * 182.48599 * 22 21 20 42 42 H 1.08997 * 109.51997 * 62.29910 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1310 6 6 1.6994 -0.2397 2.4826 7 7 0.9437 0.8299 2.6035 8 14 2.3227 -1.1201 4.0077 9 1 3.1476 -2.2869 3.6034 10 1 3.1475 -0.1865 4.8159 11 1 1.1680 -1.5872 4.8162 12 7 2.0196 -0.6924 -1.1996 13 6 3.4850 -0.7944 -1.1873 14 6 1.5486 -0.0261 -2.4212 15 6 1.8624 -0.9038 -3.6343 16 8 1.1115 -2.1169 -3.5517 17 6 1.3332 -3.0131 -4.6425 18 6 0.3243 -2.7221 -5.7578 19 6 0.5177 -3.7368 -6.8876 20 8 0.3625 -5.0596 -6.3698 21 6 1.3093 -5.4045 -5.3567 22 6 1.1477 -4.4567 -4.1652 23 1 -0.3632 0.5137 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7098 1.1614 3.4846 27 1 3.9191 0.2045 -1.2302 28 1 3.8069 -1.2915 -0.2722 29 1 3.8162 -1.3719 -2.0503 30 1 0.4721 0.1327 -2.3564 31 1 2.0518 0.9349 -2.5280 32 1 1.5941 -0.3718 -4.5470 33 1 2.9273 -1.1361 -3.6489 34 1 2.3463 -2.8818 -5.0221 35 1 -0.6886 -2.8046 -5.3635 36 1 0.4859 -1.7147 -6.1414 37 1 1.5171 -3.6262 -7.3085 38 1 -0.2257 -3.5612 -7.6652 39 1 2.3190 -5.3157 -5.7574 40 1 1.1363 -6.4303 -5.0311 41 1 1.8981 -4.6899 -3.4099 42 1 0.1515 -4.5744 -3.7388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599313269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:58 Heat of formation + Delta-G solvation = -110.540474 kcal Electronic energy + Delta-G solvation = -20111.097831 eV Core-core repulsion = 17090.515419 eV Total energy + Delta-G solvation = -3020.582412 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54914 -39.17333 -37.87218 -34.92856 -33.42283 -32.06648 -31.39655 -30.07080 -27.30699 -25.91837 -25.16225 -24.53164 -23.09641 -21.33709 -21.00608 -18.37366 -17.97675 -17.33985 -16.97448 -16.92912 -16.36141 -15.81676 -15.65190 -15.45891 -15.32189 -14.71409 -14.27607 -14.11615 -14.06919 -13.50473 -13.26510 -13.04911 -12.96254 -12.77822 -12.59608 -12.34603 -12.24739 -12.14950 -12.03930 -11.95439 -11.80966 -11.32441 -11.29505 -10.86621 -10.63414 -10.51696 -10.29678 -8.85310 -8.10930 -6.22387 1.40848 1.42793 1.54674 2.42618 2.71622 2.99409 3.16993 3.40248 3.81010 3.82548 4.02320 4.10226 4.19273 4.27652 4.31488 4.39000 4.49019 4.56383 4.58729 4.69037 4.73111 4.78097 4.78774 4.84397 4.88391 5.00898 5.05582 5.08227 5.09175 5.19104 5.26139 5.29422 5.50371 5.72990 5.79733 6.24624 6.26221 6.41283 6.47010 6.79067 6.92987 7.46681 8.95518 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.031793 B = 0.004277 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.489434 B = 6545.091804 C = 6882.314934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.215 3.785 3 H -0.037 1.037 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.538 5.538 13 C 0.040 3.960 14 C 0.047 3.953 15 C 0.077 3.923 16 O -0.387 6.387 17 C 0.081 3.919 18 C -0.174 4.174 19 C 0.064 3.936 20 O -0.403 6.403 21 C 0.068 3.932 22 C -0.153 4.153 23 H 0.059 0.941 24 H 0.028 0.972 25 H 0.025 0.975 26 H 0.261 0.739 27 H 0.008 0.992 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -7.494 -18.488 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 H -0.019 1.019 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.263 5.263 13 C -0.108 4.108 14 C -0.081 4.081 15 C 0.001 3.999 16 O -0.306 6.306 17 C 0.023 3.977 18 C -0.212 4.212 19 C -0.013 4.013 20 O -0.323 6.323 21 C -0.009 4.009 22 C -0.191 4.191 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.027 0.973 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.206 -8.024 -18.263 20.069 hybrid contribution 0.691 1.107 1.185 1.763 sum 2.897 -6.917 -17.077 18.651 Atomic orbital electron populations 1.21634 0.97570 0.98894 0.99479 1.19054 0.92497 0.90148 0.87507 1.01950 1.21460 1.30935 1.12153 0.90972 0.92335 1.25728 0.95399 0.95792 1.01940 1.70028 1.37928 1.24277 1.23950 0.85463 0.78107 0.78611 0.79185 1.19170 1.20533 1.20688 1.62019 1.10053 1.52423 1.01794 1.22222 0.87956 0.98766 1.01841 1.22226 1.01124 0.94522 0.90266 1.22556 0.95155 0.85579 0.96643 1.88102 1.67157 1.29652 1.45679 1.22222 0.98279 0.89915 0.87257 1.22703 1.00421 1.01100 0.97004 1.22685 1.02897 0.80771 0.94909 1.87903 1.56855 1.31969 1.55531 1.22660 0.92917 0.98878 0.86402 1.22275 1.03143 0.93977 0.99674 0.92202 0.95267 0.95555 0.92965 0.97330 0.92441 0.90872 0.91231 0.94029 0.91307 0.92690 0.91062 0.92051 0.89639 0.91428 0.87251 0.91333 0.87240 0.90408 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.09 8.76 71.98 0.63 -5.46 16 2 C 0.21 11.37 2.06 44.17 0.09 11.47 16 3 H -0.04 -2.15 8.14 -2.39 -0.02 -2.17 16 4 C -0.52 -29.27 7.88 25.60 0.20 -29.07 16 5 H 0.06 3.31 6.41 -2.91 -0.02 3.29 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -54.17 11.32 21.45 0.24 -53.92 16 8 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 N -0.54 -23.89 4.57 -901.45 -4.12 -28.01 16 13 C 0.04 1.60 9.05 127.69 1.16 2.75 16 14 C 0.05 1.71 5.16 86.30 0.45 2.15 16 15 C 0.08 2.21 5.81 71.98 0.42 2.63 16 16 O -0.39 -12.43 9.94 -148.98 -1.48 -13.91 16 17 C 0.08 1.93 2.70 30.71 0.08 2.01 16 18 C -0.17 -3.52 5.76 30.68 0.18 -3.35 16 19 C 0.06 1.05 6.84 72.01 0.49 1.54 16 20 O -0.40 -8.52 10.77 -148.98 -1.60 -10.12 16 21 C 0.07 1.23 6.84 72.02 0.49 1.72 16 22 C -0.15 -3.57 5.79 30.69 0.18 -3.40 16 23 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 24 H 0.03 1.33 6.20 -2.39 -0.01 1.32 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 2.48 6.10 -2.39 -0.01 2.46 16 29 H 0.07 2.39 6.37 -2.39 -0.02 2.38 16 30 H 0.07 2.70 5.83 -2.38 -0.01 2.68 16 31 H 0.04 1.45 8.12 -2.39 -0.02 1.43 16 32 H 0.07 1.57 7.99 -2.39 -0.02 1.55 16 33 H 0.06 1.46 6.28 -2.38 -0.01 1.44 16 34 H 0.07 1.45 7.79 -2.39 -0.02 1.43 16 35 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.09 1.48 7.99 -2.39 -0.02 1.46 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.76 324.30 0.85 -64.91 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.97 Total: 10.51 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.81 Total: -15.99 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -3.88 Total: -81.93 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -3.09 Total: -24.03 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.76 0.85 -64.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599313269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.627 kcal (2) G-P(sol) polarization free energy of solvation -65.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds