Wall clock time and date at job start Mon Mar 30 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47504 * 2 1 4 4 C 1.50703 * 109.46981 * 240.00284 * 2 1 3 5 5 H 1.08006 * 119.99850 * 335.30248 * 4 2 1 6 6 C 1.37876 * 120.00338 * 155.31518 * 4 2 1 7 7 N 1.31507 * 120.00262 * 181.75164 * 6 4 2 8 8 Si 1.86806 * 119.99848 * 1.74182 * 6 4 2 9 9 H 1.48497 * 109.46902 * 84.92737 * 8 6 4 10 10 H 1.48498 * 109.47148 * 204.92660 * 8 6 4 11 11 H 1.48506 * 109.46902 * 324.92962 * 8 6 4 12 12 N 1.46904 * 109.47091 * 120.00621 * 2 1 3 13 13 C 1.46899 * 111.00274 * 58.94914 * 12 2 1 14 14 C 1.46904 * 110.99656 * 294.99264 * 12 2 1 15 15 C 1.52995 * 109.47157 * 288.08302 * 14 12 2 16 16 H 1.08994 * 109.47698 * 57.99915 * 15 14 12 17 17 O 1.42900 * 109.47260 * 297.99287 * 15 14 12 18 18 C 1.53001 * 109.46907 * 177.99953 * 15 14 12 19 19 C 1.52998 * 109.47211 * 185.00016 * 18 15 14 20 20 O 1.42899 * 112.85346 * 55.33012 * 19 18 15 21 21 C 1.53781 * 113.61224 * 284.13356 * 19 18 15 22 22 C 1.53962 * 87.02127 * 220.04930 * 21 19 18 23 23 C 1.53773 * 87.10822 * 25.36149 * 22 21 19 24 24 H 1.09006 * 109.46659 * 302.85020 * 1 2 3 25 25 H 1.09002 * 109.46989 * 62.84806 * 1 2 3 26 26 H 1.08996 * 109.47191 * 182.85302 * 1 2 3 27 27 H 0.96999 * 120.00627 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47035 * 289.92120 * 13 12 2 29 29 H 1.09000 * 109.46866 * 49.91715 * 13 12 2 30 30 H 1.09004 * 109.46830 * 169.91711 * 13 12 2 31 31 H 1.08996 * 109.46735 * 168.08056 * 14 12 2 32 32 H 1.09001 * 109.46667 * 48.08032 * 14 12 2 33 33 H 0.96697 * 114.00167 * 300.00556 * 17 15 14 34 34 H 1.09001 * 109.47141 * 304.99829 * 18 15 14 35 35 H 1.09001 * 109.47766 * 64.99420 * 18 15 14 36 36 H 0.96700 * 113.99995 * 180.02562 * 20 19 18 37 37 H 1.08997 * 113.61662 * 334.56538 * 21 19 18 38 38 H 1.08997 * 113.61834 * 105.46924 * 21 19 18 39 39 H 1.08998 * 113.53304 * 270.81185 * 22 21 19 40 40 H 1.09002 * 113.74414 * 139.94662 * 22 21 19 41 41 H 1.09001 * 113.61599 * 220.08884 * 23 22 21 42 42 H 1.09006 * 113.69243 * 89.20600 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4111 -1.4450 -1.7214 6 6 3.2850 -0.4227 -1.7296 7 7 3.7096 -1.0173 -2.8230 8 14 4.3788 0.8119 -0.8527 9 1 5.1236 0.1283 0.2350 10 1 5.3417 1.3954 -1.8210 11 1 3.5407 1.8932 -0.2752 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2459 14 6 1.6488 0.0390 2.4181 15 6 2.4885 1.3136 2.5231 16 1 2.3323 1.9260 1.6351 17 8 3.8709 0.9662 2.6251 18 6 2.0676 2.1007 3.7658 19 6 2.8180 3.4334 3.8039 20 8 2.6408 4.2043 2.6138 21 6 4.2871 3.3009 4.2389 22 6 4.0808 4.5952 5.0468 23 6 2.5870 4.2338 5.0965 24 1 -0.3633 0.5575 0.8634 25 1 -0.3633 0.4690 -0.9144 26 1 -0.3633 -1.0263 0.0511 27 1 4.5908 -0.8147 -3.1744 28 1 0.4563 -2.0746 1.4436 29 1 1.7206 -2.5624 0.2895 30 1 2.0433 -2.6182 2.0391 31 1 1.8321 -0.5898 3.2893 32 1 0.5920 0.3027 2.3761 33 1 4.0836 0.4202 3.3943 34 1 0.9945 2.2889 3.7305 35 1 2.3059 1.5238 4.6594 36 1 3.1087 5.0506 2.6201 37 1 4.4817 2.4257 4.8588 38 1 4.9967 3.4057 3.4183 39 1 4.2923 5.5011 4.4788 40 1 4.5653 4.5850 6.0232 41 1 1.9259 5.0908 4.9671 42 1 2.3144 3.6143 5.9510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599313465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:30 Heat of formation + Delta-G solvation = -73.643439 kcal Electronic energy + Delta-G solvation = -21025.214126 eV Core-core repulsion = 18006.231690 eV Total energy + Delta-G solvation = -3018.982437 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05207 -37.89107 -35.78408 -34.29232 -32.29075 -31.12440 -29.57107 -27.36048 -25.80052 -25.40584 -24.08818 -22.42003 -21.13405 -19.75121 -18.76621 -16.90119 -16.75521 -16.19795 -15.37151 -15.23904 -14.70585 -14.41665 -14.14377 -13.70496 -13.38104 -13.11180 -12.97212 -12.83847 -12.49241 -12.26290 -11.80601 -11.70496 -11.46016 -11.21433 -11.07426 -10.97213 -10.76694 -10.70797 -10.43361 -10.29234 -10.12848 -9.71935 -9.65345 -9.44996 -9.17580 -8.82989 -8.40843 -7.05831 -5.92159 -3.97969 3.64386 3.70414 3.88158 4.13761 4.32651 4.42138 4.58909 4.71851 4.75797 4.89654 5.04646 5.20582 5.44826 5.48771 5.56552 5.64722 5.69150 5.72879 5.81773 5.86107 5.90268 6.00078 6.06803 6.08682 6.22669 6.28969 6.31583 6.37538 6.44740 6.62935 6.69208 6.91704 7.08451 7.27437 7.67784 7.78546 8.18105 8.20833 8.42249 8.70307 9.07852 9.73098 11.17867 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.007150 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.936920 B = 3915.228924 C = 4452.564491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.164 3.836 3 H 0.053 0.947 4 C -0.504 4.504 5 H 0.068 0.932 6 C 0.080 3.920 7 N -0.903 5.903 8 Si 0.909 3.091 9 H -0.262 1.262 10 H -0.312 1.312 11 H -0.268 1.268 12 N -0.524 5.524 13 C 0.039 3.961 14 C 0.014 3.986 15 C 0.114 3.886 16 H 0.107 0.893 17 O -0.537 6.537 18 C -0.129 4.129 19 C 0.122 3.878 20 O -0.535 6.535 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.171 4.171 24 H 0.026 0.974 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.262 0.738 28 H 0.005 0.995 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.358 0.642 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.373 0.627 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 8.900 17.638 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.059 3.941 3 H 0.071 0.929 4 C -0.542 4.542 5 H 0.086 0.914 6 C -0.124 4.124 7 N -0.541 5.541 8 Si 0.739 3.261 9 H -0.186 1.186 10 H -0.240 1.240 11 H -0.193 1.193 12 N -0.248 5.248 13 C -0.110 4.110 14 C -0.115 4.115 15 C 0.054 3.946 16 H 0.125 0.875 17 O -0.340 6.340 18 C -0.167 4.167 19 C 0.081 3.919 20 O -0.340 6.340 21 C -0.193 4.193 22 C -0.189 4.189 23 C -0.209 4.209 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.024 0.976 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.203 0.797 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.220 0.780 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.268 8.694 16.762 18.925 hybrid contribution -0.060 0.773 1.233 1.457 sum -1.328 9.467 17.995 20.377 Atomic orbital electron populations 1.22339 1.00676 1.00132 0.99472 1.19983 0.89417 0.95997 0.88737 0.92881 1.20795 1.01619 1.24271 1.07538 0.91418 1.25081 0.97596 0.95806 0.93904 1.69955 1.19257 1.43322 1.21533 0.86386 0.79850 0.81617 0.78254 1.18650 1.24027 1.19297 1.62830 1.59292 1.01585 1.01063 1.22121 0.95258 0.91158 1.02427 1.22864 0.97294 0.96046 0.95331 1.21893 0.81614 0.93842 0.97211 0.87538 1.86728 1.24433 1.72755 1.50113 1.22180 1.00639 0.93960 0.99902 1.22056 0.94811 0.91173 0.83906 1.86557 1.74628 1.34596 1.38199 1.23613 0.98025 0.97476 1.00142 1.22956 0.96594 0.98427 1.00949 1.23744 0.96886 1.00909 0.99386 0.95456 0.92906 0.93646 0.92885 0.97615 0.89928 0.94127 0.92513 0.94848 0.79726 0.90758 0.90573 0.77956 0.89455 0.90368 0.90457 0.91271 0.91155 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 8.53 37.16 0.32 -3.22 16 2 C 0.16 3.96 1.61 -68.86 -0.11 3.84 16 3 H 0.05 1.37 4.00 -51.93 -0.21 1.16 16 4 C -0.50 -14.43 7.57 -34.44 -0.26 -14.69 16 5 H 0.07 2.09 8.05 -52.48 -0.42 1.67 16 6 C 0.08 2.38 5.47 -17.82 -0.10 2.29 16 7 N -0.90 -28.48 13.96 55.43 0.77 -27.70 16 8 Si 0.91 24.41 26.75 -169.99 -4.55 19.86 16 9 H -0.26 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.31 -8.45 7.11 56.52 0.40 -8.05 16 11 H -0.27 -7.06 5.65 56.52 0.32 -6.74 16 12 N -0.52 -11.35 4.25 -236.28 -1.01 -12.35 16 13 C 0.04 0.78 8.67 60.06 0.52 1.30 16 14 C 0.01 0.24 4.49 -3.82 -0.02 0.22 16 15 C 0.11 1.95 2.90 -26.73 -0.08 1.87 16 16 H 0.11 2.25 5.54 -51.93 -0.29 1.96 16 17 O -0.54 -9.51 11.24 -35.23 -0.40 -9.91 16 18 C -0.13 -1.67 4.60 -26.73 -0.12 -1.79 16 19 C 0.12 1.50 1.40 -89.81 -0.13 1.38 16 20 O -0.54 -7.65 12.77 -35.23 -0.45 -8.10 16 21 C -0.15 -1.74 6.10 -25.82 -0.16 -1.90 16 22 C -0.15 -1.37 7.76 -25.83 -0.20 -1.57 16 23 C -0.17 -1.64 7.44 -25.92 -0.19 -1.83 16 24 H 0.03 0.51 6.43 -51.93 -0.33 0.17 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.94 6.46 -51.93 -0.34 0.60 16 27 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 28 H 0.01 0.10 6.79 -51.93 -0.35 -0.25 16 29 H 0.08 1.89 6.80 -51.93 -0.35 1.54 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 32 H 0.03 0.58 6.03 -51.93 -0.31 0.26 16 33 H 0.36 4.87 9.04 45.56 0.41 5.28 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.37 3.85 8.33 45.56 0.38 4.23 16 37 H 0.09 0.90 8.06 -51.93 -0.42 0.49 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.63 7.80 -51.93 -0.40 0.22 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 320.07 15.07 4.82 4.82 Total: -1.00 -33.51 320.07 -6.98 -40.48 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.65 Total: 6.99 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -0.53 Total: -14.10 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.23 Total: -40.06 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.85 Total: -18.01 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.55 Total: 19.86 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.51 -6.98 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599313465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.163 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds