Wall clock time and date at job start Mon Mar 30 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47504 * 2 1 4 4 C 1.50703 * 109.46981 * 240.00284 * 2 1 3 5 5 H 1.08006 * 119.99850 * 335.30248 * 4 2 1 6 6 C 1.37876 * 120.00338 * 155.31518 * 4 2 1 7 7 N 1.31507 * 120.00262 * 181.75164 * 6 4 2 8 8 Si 1.86806 * 119.99848 * 1.74182 * 6 4 2 9 9 H 1.48497 * 109.46902 * 84.92737 * 8 6 4 10 10 H 1.48498 * 109.47148 * 204.92660 * 8 6 4 11 11 H 1.48506 * 109.46902 * 324.92962 * 8 6 4 12 12 N 1.46904 * 109.47091 * 120.00621 * 2 1 3 13 13 C 1.46899 * 111.00274 * 58.94914 * 12 2 1 14 14 C 1.46904 * 110.99656 * 294.99264 * 12 2 1 15 15 C 1.52995 * 109.47157 * 288.08302 * 14 12 2 16 16 H 1.08994 * 109.47698 * 57.99915 * 15 14 12 17 17 O 1.42900 * 109.47260 * 297.99287 * 15 14 12 18 18 C 1.53001 * 109.46907 * 177.99953 * 15 14 12 19 19 C 1.52998 * 109.47211 * 185.00016 * 18 15 14 20 20 O 1.42899 * 112.85346 * 55.33012 * 19 18 15 21 21 C 1.53781 * 113.61224 * 284.13356 * 19 18 15 22 22 C 1.53962 * 87.02127 * 220.04930 * 21 19 18 23 23 C 1.53773 * 87.10822 * 25.36149 * 22 21 19 24 24 H 1.09006 * 109.46659 * 302.85020 * 1 2 3 25 25 H 1.09002 * 109.46989 * 62.84806 * 1 2 3 26 26 H 1.08996 * 109.47191 * 182.85302 * 1 2 3 27 27 H 0.96999 * 120.00627 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47035 * 289.92120 * 13 12 2 29 29 H 1.09000 * 109.46866 * 49.91715 * 13 12 2 30 30 H 1.09004 * 109.46830 * 169.91711 * 13 12 2 31 31 H 1.08996 * 109.46735 * 168.08056 * 14 12 2 32 32 H 1.09001 * 109.46667 * 48.08032 * 14 12 2 33 33 H 0.96697 * 114.00167 * 300.00556 * 17 15 14 34 34 H 1.09001 * 109.47141 * 304.99829 * 18 15 14 35 35 H 1.09001 * 109.47766 * 64.99420 * 18 15 14 36 36 H 0.96700 * 113.99995 * 180.02562 * 20 19 18 37 37 H 1.08997 * 113.61662 * 334.56538 * 21 19 18 38 38 H 1.08997 * 113.61834 * 105.46924 * 21 19 18 39 39 H 1.08998 * 113.53304 * 270.81185 * 22 21 19 40 40 H 1.09002 * 113.74414 * 139.94662 * 22 21 19 41 41 H 1.09001 * 113.61599 * 220.08884 * 23 22 21 42 42 H 1.09006 * 113.69243 * 89.20600 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4111 -1.4450 -1.7214 6 6 3.2850 -0.4227 -1.7296 7 7 3.7096 -1.0173 -2.8230 8 14 4.3788 0.8119 -0.8527 9 1 5.1236 0.1283 0.2350 10 1 5.3417 1.3954 -1.8210 11 1 3.5407 1.8932 -0.2752 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2459 14 6 1.6488 0.0390 2.4181 15 6 2.4885 1.3136 2.5231 16 1 2.3323 1.9260 1.6351 17 8 3.8709 0.9662 2.6251 18 6 2.0676 2.1007 3.7658 19 6 2.8180 3.4334 3.8039 20 8 2.6408 4.2043 2.6138 21 6 4.2871 3.3009 4.2389 22 6 4.0808 4.5952 5.0468 23 6 2.5870 4.2338 5.0965 24 1 -0.3633 0.5575 0.8634 25 1 -0.3633 0.4690 -0.9144 26 1 -0.3633 -1.0263 0.0511 27 1 4.5908 -0.8147 -3.1744 28 1 0.4563 -2.0746 1.4436 29 1 1.7206 -2.5624 0.2895 30 1 2.0433 -2.6182 2.0391 31 1 1.8321 -0.5898 3.2893 32 1 0.5920 0.3027 2.3761 33 1 4.0836 0.4202 3.3943 34 1 0.9945 2.2889 3.7305 35 1 2.3059 1.5238 4.6594 36 1 3.1087 5.0506 2.6201 37 1 4.4817 2.4257 4.8588 38 1 4.9967 3.4057 3.4183 39 1 4.2923 5.5011 4.4788 40 1 4.5653 4.5850 6.0232 41 1 1.9259 5.0908 4.9671 42 1 2.3144 3.6143 5.9510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599313465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:30 Heat of formation + Delta-G solvation = -101.585056 kcal Electronic energy + Delta-G solvation = -21026.425766 eV Core-core repulsion = 18006.231690 eV Total energy + Delta-G solvation = -3020.194076 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96920 -39.40085 -37.25963 -35.22497 -34.47305 -32.40780 -31.32509 -28.67656 -27.43863 -26.57471 -25.52210 -23.79389 -22.34155 -20.80164 -20.40479 -18.98387 -17.73831 -17.41216 -16.80558 -16.35356 -16.21504 -16.07817 -15.62422 -15.03987 -14.85340 -14.47534 -14.43065 -14.11598 -13.88625 -13.46014 -13.32903 -13.14012 -12.95959 -12.71440 -12.68293 -12.34732 -12.10995 -11.89459 -11.79186 -11.78961 -11.59474 -11.45731 -11.27660 -10.95078 -10.71512 -10.61187 -10.29732 -8.71854 -8.25119 -6.31507 1.44412 1.54587 1.67826 2.47119 2.97743 3.28249 3.37190 3.62341 3.71571 3.85877 3.86096 3.98873 4.15315 4.37008 4.42701 4.50359 4.61326 4.62710 4.66921 4.70691 4.78213 4.83431 4.84313 4.91396 4.94360 4.98476 5.06421 5.16558 5.20229 5.21329 5.34857 5.40773 5.42035 5.49918 5.69407 6.16914 6.56209 6.69746 6.85826 6.86965 7.14305 7.41305 8.88867 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.007150 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.936920 B = 3915.228924 C = 4452.564491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.032 0.968 6 C 0.027 3.973 7 N -0.949 5.949 8 Si 0.973 3.027 9 H -0.264 1.264 10 H -0.316 1.316 11 H -0.264 1.264 12 N -0.543 5.543 13 C 0.044 3.956 14 C 0.016 3.984 15 C 0.119 3.881 16 H 0.061 0.939 17 O -0.560 6.560 18 C -0.121 4.121 19 C 0.104 3.896 20 O -0.565 6.565 21 C -0.157 4.157 22 C -0.143 4.143 23 C -0.158 4.158 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.262 0.738 28 H 0.024 0.976 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.376 0.624 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.385 0.615 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 9.783 21.224 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.057 0.943 4 C -0.535 4.535 5 H 0.051 0.949 6 C -0.171 4.171 7 N -0.589 5.589 8 Si 0.802 3.198 9 H -0.189 1.189 10 H -0.245 1.245 11 H -0.189 1.189 12 N -0.267 5.267 13 C -0.104 4.104 14 C -0.112 4.112 15 C 0.060 3.940 16 H 0.079 0.921 17 O -0.365 6.365 18 C -0.159 4.159 19 C 0.063 3.937 20 O -0.372 6.372 21 C -0.195 4.195 22 C -0.180 4.180 23 C -0.195 4.195 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.224 0.776 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.234 0.766 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.769 9.580 20.378 22.587 hybrid contribution 0.035 0.441 0.137 0.464 sum -1.734 10.022 20.515 22.898 Atomic orbital electron populations 1.22216 0.98440 1.00747 1.00497 1.19722 0.91151 0.94590 0.88229 0.94343 1.21071 1.00700 1.22809 1.08966 0.94936 1.25772 0.99111 0.97642 0.94579 1.70066 1.19902 1.45570 1.23386 0.85385 0.78013 0.79667 0.76726 1.18918 1.24515 1.18938 1.62474 1.60070 1.02355 1.01793 1.22065 0.96766 0.90298 1.01304 1.22961 0.97788 0.96331 0.94094 1.21690 0.81440 0.93363 0.97529 0.92072 1.86673 1.24857 1.73424 1.51578 1.22145 1.00796 0.94099 0.98875 1.22316 0.95546 0.91308 0.84507 1.86513 1.75235 1.35693 1.39784 1.23624 0.96697 0.99293 0.99854 1.22932 0.96310 0.97451 1.01288 1.23665 0.97198 1.00641 0.98025 0.92549 0.93633 0.93360 0.92901 0.95791 0.93742 0.91448 0.89260 0.94012 0.77630 0.90521 0.87467 0.76560 0.88353 0.92964 0.89965 0.89807 0.90882 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.57 8.53 71.98 0.61 -5.95 16 2 C 0.17 8.13 1.61 44.17 0.07 8.20 16 3 H 0.04 1.98 4.00 -2.39 -0.01 1.97 16 4 C -0.50 -29.17 7.57 25.60 0.19 -28.98 16 5 H 0.03 2.09 8.05 -2.91 -0.02 2.07 16 6 C 0.03 1.68 5.47 84.66 0.46 2.14 16 7 N -0.95 -61.82 13.96 21.45 0.30 -61.52 16 8 Si 0.97 52.06 26.75 68.60 1.84 53.90 16 9 H -0.26 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.32 -16.97 7.11 99.48 0.71 -16.26 16 11 H -0.26 -13.86 5.65 99.48 0.56 -13.30 16 12 N -0.54 -22.60 4.25 -901.45 -3.84 -26.44 16 13 C 0.04 1.69 8.67 127.69 1.11 2.80 16 14 C 0.02 0.52 4.49 86.30 0.39 0.91 16 15 C 0.12 3.80 2.90 30.59 0.09 3.89 16 16 H 0.06 2.54 5.54 -2.39 -0.01 2.53 16 17 O -0.56 -18.61 11.24 -148.98 -1.67 -20.28 16 18 C -0.12 -2.73 4.60 30.59 0.14 -2.59 16 19 C 0.10 2.30 1.40 -10.27 -0.01 2.29 16 20 O -0.56 -15.58 12.77 -148.98 -1.90 -17.48 16 21 C -0.16 -3.16 6.10 31.18 0.19 -2.97 16 22 C -0.14 -2.11 7.76 31.18 0.24 -1.87 16 23 C -0.16 -2.44 7.44 31.12 0.23 -2.21 16 24 H 0.06 1.97 6.43 -2.38 -0.02 1.96 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.93 6.46 -2.39 -0.02 1.91 16 27 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 28 H 0.02 0.83 6.79 -2.39 -0.02 0.81 16 29 H 0.04 2.04 6.80 -2.39 -0.02 2.02 16 30 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.09 2.28 8.00 -2.39 -0.02 2.26 16 32 H 0.04 1.27 6.03 -2.39 -0.01 1.26 16 33 H 0.38 9.05 9.04 -74.06 -0.67 8.38 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.11 1.73 8.09 -2.39 -0.02 1.71 16 36 H 0.39 7.67 8.33 -74.06 -0.62 7.05 16 37 H 0.10 1.71 8.06 -2.39 -0.02 1.69 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.13 7.80 -2.39 -0.02 1.11 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.10 1.29 8.10 -2.38 -0.02 1.27 16 Total: -1.00 -74.54 320.07 -1.98 -76.52 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -0.42 Total: 19.64 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 3.72 Total: -24.34 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -3.54 Total: -87.95 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -3.58 Total: -37.76 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 1.84 Total: 53.90 kcal Total: -74.54 -1.98 -76.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599313465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.066 kcal (2) G-P(sol) polarization free energy of solvation -74.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds