Wall clock time and date at job start Mon Mar 30 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46970 * 2 1 4 4 C 1.50701 * 109.47139 * 240.00222 * 2 1 3 5 5 H 1.07994 * 119.99590 * 239.99823 * 4 2 1 6 6 C 1.37872 * 119.99857 * 59.99894 * 4 2 1 7 7 N 1.31504 * 120.00564 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99518 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46943 * 89.99926 * 8 6 4 10 10 H 1.48504 * 109.46857 * 209.99880 * 8 6 4 11 11 H 1.48500 * 109.47268 * 329.99697 * 8 6 4 12 12 N 1.46903 * 109.47334 * 119.99753 * 2 1 3 13 13 C 1.46894 * 110.99912 * 176.04549 * 12 2 1 14 14 C 1.46904 * 110.99808 * 300.00223 * 12 2 1 15 15 C 1.53001 * 109.46876 * 160.12536 * 14 12 2 16 16 H 1.08997 * 109.47240 * 305.31001 * 15 14 12 17 17 O 1.42908 * 109.47063 * 65.30500 * 15 14 12 18 18 C 1.52997 * 109.47373 * 185.30249 * 15 14 12 19 19 C 1.52996 * 109.47326 * 175.00027 * 18 15 14 20 20 O 1.42901 * 112.84822 * 55.33736 * 19 18 15 21 21 C 1.53783 * 113.61713 * 284.13839 * 19 18 15 22 22 C 1.53948 * 87.02145 * 220.04938 * 21 19 18 23 23 C 1.53777 * 87.11271 * 25.36034 * 22 21 19 24 24 H 1.09003 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47353 * 300.00021 * 1 2 3 26 26 H 1.09004 * 109.47560 * 59.99867 * 1 2 3 27 27 H 0.97000 * 120.00627 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.46966 * 190.10946 * 13 12 2 29 29 H 1.09006 * 109.47029 * 70.11914 * 13 12 2 30 30 H 1.08993 * 109.47625 * 310.11333 * 13 12 2 31 31 H 1.08999 * 109.47189 * 280.12616 * 14 12 2 32 32 H 1.09000 * 109.47332 * 40.12753 * 14 12 2 33 33 H 0.96696 * 113.99471 * 59.99558 * 17 15 14 34 34 H 1.09002 * 109.47436 * 295.00397 * 18 15 14 35 35 H 1.09003 * 109.46689 * 55.00414 * 18 15 14 36 36 H 0.96698 * 113.99658 * 180.02562 * 20 19 18 37 37 H 1.09004 * 113.60991 * 334.56860 * 21 19 18 38 38 H 1.09003 * 113.61344 * 105.46915 * 21 19 18 39 39 H 1.09004 * 113.53791 * 270.81475 * 22 21 19 40 40 H 1.08994 * 113.74777 * 139.94421 * 22 21 19 41 41 H 1.08997 * 113.61926 * 220.09026 * 23 22 21 42 42 H 1.08999 * 113.68809 * 89.19819 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7945 1.1870 14 6 1.5486 -0.0263 2.4211 15 6 1.6361 -0.9992 3.5986 16 1 1.0901 -1.9113 3.3577 17 8 3.0059 -1.3173 3.8530 18 6 1.0236 -0.3515 4.8421 19 6 0.9976 -1.3672 5.9859 20 8 2.2852 -1.9197 6.2667 21 6 -0.1094 -2.4253 5.8453 22 6 -0.3242 -2.2862 7.3633 23 6 0.2557 -0.8675 7.2368 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7081 1.1609 -3.4844 28 1 3.8096 -1.4614 1.9857 29 1 3.9194 0.1936 1.3399 30 1 3.8136 -1.1911 0.2264 31 1 2.1713 0.8453 2.6229 32 1 0.5141 0.2896 2.2869 33 1 3.5529 -0.5513 4.0745 34 1 1.6228 0.5106 5.1352 35 1 0.0066 -0.0285 4.6198 36 1 2.2878 -2.5646 6.9873 37 1 -0.9601 -2.0908 5.2515 38 1 0.2594 -3.4057 5.5436 39 1 0.2960 -2.9602 7.9543 40 1 -1.3723 -2.3044 7.6619 41 1 0.9187 -0.5920 8.0568 42 1 -0.4941 -0.1054 7.0243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599313466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:32 Heat of formation + Delta-G solvation = -96.321511 kcal Electronic energy + Delta-G solvation = -20345.972578 eV Core-core repulsion = 17326.006746 eV Total energy + Delta-G solvation = -3019.965832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89085 -39.27290 -37.15478 -35.07196 -34.60166 -32.34153 -31.04756 -28.94801 -26.93584 -26.58568 -25.34632 -23.74706 -22.21129 -21.25217 -20.43555 -18.36270 -17.55343 -17.24839 -17.15529 -16.81605 -16.13374 -15.80837 -15.53875 -14.99178 -14.68602 -14.38998 -14.09572 -13.96222 -13.72571 -13.51688 -13.29918 -12.93831 -12.80343 -12.64128 -12.49906 -12.47698 -12.10716 -11.99010 -11.86398 -11.77269 -11.75135 -11.64614 -11.09039 -10.92273 -10.54824 -10.50334 -10.19401 -8.84810 -8.11704 -6.23089 1.41502 1.42243 1.52766 2.42123 3.15799 3.26379 3.34849 3.62639 3.66669 3.70788 3.91791 3.96219 4.26038 4.31305 4.49920 4.57624 4.66021 4.71939 4.77450 4.79683 4.84047 4.87375 4.99484 5.04169 5.04310 5.09012 5.10539 5.18382 5.22284 5.32601 5.43011 5.50223 5.51857 5.73273 5.81211 6.27107 6.43908 6.78958 6.92713 6.99415 7.03059 7.46036 8.94355 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.041003 B = 0.004296 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.718802 B = 6516.163569 C = 6759.243614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.212 3.788 3 H -0.042 1.042 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.539 5.539 13 C 0.037 3.963 14 C 0.017 3.983 15 C 0.136 3.864 16 H 0.082 0.918 17 O -0.549 6.549 18 C -0.126 4.126 19 C 0.116 3.884 20 O -0.540 6.540 21 C -0.176 4.176 22 C -0.137 4.137 23 C -0.164 4.164 24 H 0.030 0.970 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.262 0.738 28 H 0.090 0.910 29 H 0.002 0.998 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.371 0.629 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.381 0.619 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -3.138 19.992 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 H -0.024 1.024 4 C -0.558 4.558 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.263 5.263 13 C -0.111 4.111 14 C -0.111 4.111 15 C 0.076 3.924 16 H 0.100 0.900 17 O -0.354 6.354 18 C -0.164 4.164 19 C 0.075 3.925 20 O -0.345 6.345 21 C -0.214 4.214 22 C -0.175 4.175 23 C -0.202 4.202 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.218 0.782 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.229 0.771 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.083 -3.707 19.226 19.690 hybrid contribution 0.466 0.902 -0.658 1.210 sum -1.617 -2.805 18.567 18.848 Atomic orbital electron populations 1.21678 0.97172 0.99221 0.99784 1.19096 0.92779 0.90024 0.87640 1.02427 1.21440 1.31038 1.12209 0.91138 0.92568 1.25703 0.95395 0.95768 1.01856 1.70009 1.37826 1.24192 1.24030 0.85533 0.78831 0.78269 0.78853 1.20052 1.20782 1.19488 1.62015 1.10490 1.52025 1.01778 1.22427 0.87696 0.98808 1.02213 1.23025 1.00884 0.95451 0.91777 1.21604 0.83119 0.97093 0.90593 0.90041 1.86597 1.19760 1.37602 1.91478 1.22176 1.02752 0.97810 0.93652 1.22117 0.83083 0.93161 0.94129 1.86639 1.28233 1.61694 1.57969 1.23784 0.99716 0.99921 0.97936 1.22874 1.02349 0.96770 0.95461 1.23696 1.00405 0.97966 0.98136 0.95077 0.94701 0.92189 0.92926 0.89172 0.97970 0.93340 0.95720 0.90454 0.78213 0.90765 0.88717 0.77133 0.89361 0.91815 0.89123 0.90285 0.90539 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.81 71.98 0.63 -5.38 16 2 C 0.21 11.18 2.06 44.17 0.09 11.27 16 3 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 4 C -0.52 -29.68 7.80 25.60 0.20 -29.48 16 5 H 0.06 3.23 6.45 -2.91 -0.02 3.21 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -53.94 11.32 21.44 0.24 -53.70 16 8 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 N -0.54 -24.11 4.55 -901.47 -4.10 -28.21 16 13 C 0.04 1.55 8.94 127.69 1.14 2.69 16 14 C 0.02 0.61 4.67 86.30 0.40 1.02 16 15 C 0.14 4.02 3.15 30.59 0.10 4.12 16 16 H 0.08 2.73 7.88 -2.39 -0.02 2.71 16 17 O -0.55 -16.79 8.87 -129.58 -1.15 -17.94 16 18 C -0.13 -2.81 4.58 30.59 0.14 -2.67 16 19 C 0.12 2.28 1.41 -10.27 -0.01 2.27 16 20 O -0.54 -11.70 11.79 -129.58 -1.53 -13.23 16 21 C -0.18 -3.23 7.14 31.18 0.22 -3.01 16 22 C -0.14 -1.84 7.76 31.18 0.24 -1.60 16 23 C -0.16 -2.43 7.44 31.12 0.23 -2.19 16 24 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.03 1.50 6.04 -2.38 -0.01 1.48 16 26 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.09 3.44 5.77 -2.39 -0.01 3.43 16 29 H 0.00 0.07 7.95 -2.38 -0.02 0.06 16 30 H 0.05 2.25 5.93 -2.39 -0.01 2.24 16 31 H 0.02 0.87 7.87 -2.39 -0.02 0.85 16 32 H 0.08 2.76 5.53 -2.39 -0.01 2.75 16 33 H 0.37 9.55 9.04 -74.06 -0.67 8.88 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 36 H 0.38 5.56 8.33 -74.06 -0.62 4.94 16 37 H 0.09 1.63 8.06 -2.38 -0.02 1.61 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 0.99 7.80 -2.38 -0.02 0.97 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -65.61 322.52 -0.95 -66.56 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.27 Total: 21.63 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 3.84 Total: -21.88 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -3.86 Total: -81.91 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -2.68 Total: -31.17 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.61 -0.95 -66.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599313466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.758 kcal (2) G-P(sol) polarization free energy of solvation -65.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds