Wall clock time and date at job start Mon Mar 30 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.53006 * 109.46864 * 190.00082 * 14 12 2 16 16 H 1.08993 * 109.47259 * 304.99711 * 15 14 12 17 17 O 1.42898 * 109.46945 * 64.99969 * 15 14 12 18 18 C 1.52998 * 109.46912 * 185.00041 * 15 14 12 19 19 C 1.53003 * 109.47191 * 175.00033 * 18 15 14 20 20 O 1.42897 * 112.84710 * 55.32950 * 19 18 15 21 21 C 1.53782 * 113.61237 * 284.13656 * 19 18 15 22 22 C 1.53958 * 87.01982 * 220.04673 * 21 19 18 23 23 C 1.53779 * 113.61626 * 186.53018 * 19 18 15 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 29 29 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 30 30 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 31 31 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 32 32 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 33 33 H 0.96701 * 114.00312 * 60.00684 * 17 15 14 34 34 H 1.09002 * 109.47358 * 294.99762 * 18 15 14 35 35 H 1.08994 * 109.47556 * 54.99870 * 18 15 14 36 36 H 0.96707 * 113.99646 * 180.02562 * 20 19 18 37 37 H 1.09000 * 113.61342 * 334.56583 * 21 19 18 38 38 H 1.08997 * 113.61236 * 105.46955 * 21 19 18 39 39 H 1.08999 * 113.53223 * 270.81549 * 22 21 19 40 40 H 1.08994 * 113.74572 * 139.94292 * 22 21 19 41 41 H 1.09002 * 113.61457 * 254.52771 * 23 19 18 42 42 H 1.08998 * 113.61391 * 25.34213 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8627 -0.9041 -3.6342 16 1 2.9275 -1.1362 -3.6488 17 8 1.1117 -2.1170 -3.5516 18 6 1.4860 -0.1572 -4.9153 19 6 1.9139 -0.9818 -6.1310 20 8 1.3750 -2.3052 -6.1214 21 6 3.4263 -0.9346 -6.4059 22 6 3.0705 -0.8555 -7.9017 23 6 1.7248 -0.2493 -7.4698 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 3.8029 -1.3532 -0.3068 29 1 3.8209 -1.3107 -2.0864 30 1 3.9187 0.2052 -1.1592 31 1 0.4722 0.1326 -2.3564 32 1 2.0519 0.9348 -2.5279 33 1 0.1538 -1.9862 -3.5344 34 1 0.4072 -0.0033 -4.9423 35 1 1.9913 0.8083 -4.9351 36 1 1.6355 -2.8415 -6.8828 37 1 3.9115 -0.0362 -6.0244 38 1 3.9493 -1.8497 -6.1283 39 1 2.9768 -1.8310 -8.3789 40 1 3.6986 -0.1666 -8.4664 41 1 0.8763 -0.6120 -8.0499 42 1 1.7425 0.8368 -7.3796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599313467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:35 Heat of formation + Delta-G solvation = -73.753290 kcal Electronic energy + Delta-G solvation = -20320.646180 eV Core-core repulsion = 17301.658979 eV Total energy + Delta-G solvation = -3018.987200 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06747 -37.70773 -35.60324 -34.27219 -32.68434 -31.01253 -29.13506 -27.44226 -25.96308 -24.97225 -24.03816 -22.51035 -20.83838 -19.79938 -19.22159 -16.78997 -16.40588 -16.01252 -15.73621 -15.20057 -14.94195 -14.16543 -14.01506 -13.60384 -13.43307 -13.28776 -12.96705 -12.66000 -12.57643 -12.24480 -11.77586 -11.53499 -11.14412 -11.07626 -11.05509 -10.93219 -10.83734 -10.69034 -10.32513 -10.20240 -10.06840 -9.98703 -9.90635 -9.67948 -9.13666 -8.77064 -8.37246 -7.03673 -5.96741 -4.00612 3.35753 3.39447 3.43262 4.11891 4.29134 4.33426 4.44485 4.54143 4.64979 4.84694 5.18940 5.30369 5.35280 5.40382 5.49504 5.49867 5.57666 5.66078 5.74323 5.83348 5.87384 5.90548 5.97331 6.17459 6.22111 6.31655 6.45125 6.57861 6.84695 6.88783 7.09774 7.21129 7.56694 7.68384 7.77982 7.88231 8.24854 8.33514 8.38912 8.68108 9.06183 9.64138 11.10208 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.046083 B = 0.004187 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.447926 B = 6686.361795 C = 6813.707605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H -0.005 1.005 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.526 5.526 13 C 0.038 3.962 14 C 0.017 3.983 15 C 0.120 3.880 16 H 0.091 0.909 17 O -0.531 6.531 18 C -0.132 4.132 19 C 0.124 3.876 20 O -0.518 6.518 21 C -0.171 4.171 22 C -0.147 4.147 23 C -0.173 4.173 24 H 0.006 0.994 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.260 0.740 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.007 0.993 31 H 0.075 0.925 32 H 0.022 0.978 33 H 0.364 0.636 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.367 0.633 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 -0.989 -19.125 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.012 0.988 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.250 5.250 13 C -0.111 4.111 14 C -0.112 4.112 15 C 0.060 3.940 16 H 0.108 0.892 17 O -0.334 6.334 18 C -0.171 4.171 19 C 0.082 3.918 20 O -0.322 6.322 21 C -0.209 4.209 22 C -0.185 4.185 23 C -0.211 4.211 24 H 0.025 0.975 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.209 0.791 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.213 0.787 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.209 -1.396 -18.387 18.572 hybrid contribution 0.413 0.715 0.244 0.861 sum 2.622 -0.681 -18.143 18.344 Atomic orbital electron populations 1.21843 0.97819 0.99662 0.99636 1.19252 0.92305 0.91786 0.86138 0.98769 1.21141 1.30888 1.12178 0.89773 0.91894 1.24936 0.95263 0.95095 0.99002 1.69888 1.37090 1.23114 1.23417 0.86579 0.79043 0.79818 0.82072 1.21414 1.20182 1.20389 1.62039 1.08989 1.52309 1.01653 1.22227 0.89039 0.98680 1.01137 1.22888 1.01235 0.94831 0.92222 1.21762 0.96601 0.85222 0.90428 0.89167 1.86620 1.20921 1.29443 1.96421 1.22254 1.02361 0.98051 0.94400 1.22061 0.92116 0.83937 0.93648 1.86718 1.73982 1.22926 1.48539 1.23766 0.97966 1.03236 0.95946 1.22887 0.97650 1.01134 0.96800 1.23759 0.97796 1.01275 0.98259 0.97520 0.94568 0.89758 0.93015 0.90696 0.93789 0.97430 0.90656 0.95958 0.79073 0.91017 0.90071 0.78744 0.89349 0.90710 0.90332 0.91193 0.91047 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.76 37.16 0.33 -2.95 16 2 C 0.21 5.48 2.06 -68.87 -0.14 5.34 16 3 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 4 C -0.50 -14.08 7.93 -34.44 -0.27 -14.35 16 5 H 0.06 1.77 6.39 -52.49 -0.34 1.44 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.93 11.32 55.43 0.63 -25.30 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 N -0.53 -11.73 4.57 -236.28 -1.08 -12.81 16 13 C 0.04 0.78 9.05 60.06 0.54 1.32 16 14 C 0.02 0.32 4.41 -3.82 -0.02 0.30 16 15 C 0.12 1.86 2.88 -26.73 -0.08 1.79 16 16 H 0.09 1.48 6.00 -51.93 -0.31 1.16 16 17 O -0.53 -9.15 11.63 -55.52 -0.65 -9.79 16 18 C -0.13 -1.61 4.58 -26.73 -0.12 -1.74 16 19 C 0.12 1.34 1.41 -89.81 -0.13 1.21 16 20 O -0.52 -6.21 11.79 -55.52 -0.65 -6.87 16 21 C -0.17 -1.67 7.14 -25.82 -0.18 -1.85 16 22 C -0.15 -1.15 7.76 -25.83 -0.20 -1.35 16 23 C -0.17 -1.50 7.44 -25.92 -0.19 -1.70 16 24 H 0.01 0.13 6.20 -51.93 -0.32 -0.19 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.08 2.29 6.07 -51.93 -0.32 1.98 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.07 1.66 6.23 -51.93 -0.32 1.33 16 29 H 0.04 0.80 6.21 -51.93 -0.32 0.48 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.08 1.39 5.83 -51.93 -0.30 1.09 16 32 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.36 5.47 9.05 45.56 0.41 5.88 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.37 3.07 8.33 45.56 0.38 3.45 16 37 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.53 7.80 -51.93 -0.40 0.13 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -31.13 324.68 -8.06 -39.19 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.62 Total: 6.43 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -0.56 Total: -12.45 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.45 Total: -38.11 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.30 Total: -16.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.13 -8.06 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599313467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.561 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds