Wall clock time and date at job start Mon Mar 30 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.32861 * 2 1 4 4 O 1.44425 * 110.46484 * 122.31012 * 2 1 3 5 5 C 1.44428 * 105.27339 * 159.39479 * 4 2 1 6 6 H 1.08996 * 110.37342 * 78.31731 * 5 4 2 7 7 C 1.52999 * 110.37069 * 200.54858 * 5 4 2 8 8 C 1.54801 * 104.85413 * 319.53587 * 5 4 2 9 9 H 1.08997 * 110.55570 * 265.30413 * 8 5 4 10 10 C 1.52999 * 110.60984 * 142.49330 * 8 5 4 11 11 C 1.54478 * 110.37417 * 237.74814 * 2 1 3 12 12 H 1.08991 * 110.51090 * 98.29302 * 11 2 1 13 13 N 1.46900 * 110.50824 * 335.72360 * 11 2 1 14 14 C 1.46903 * 110.99945 * 153.86841 * 13 11 2 15 15 C 1.53001 * 109.47067 * 178.90620 * 14 13 11 16 16 O 1.42905 * 109.46646 * 65.00241 * 15 14 13 17 17 C 1.42901 * 113.99365 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.46727 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99794 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99993 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00231 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47197 * 90.00414 * 22 20 18 24 24 H 1.48504 * 109.47297 * 210.00605 * 22 20 18 25 25 H 1.48502 * 109.47337 * 330.00706 * 22 20 18 26 26 H 1.09001 * 109.47173 * 186.08291 * 1 2 3 27 27 H 1.09004 * 109.47368 * 306.07743 * 1 2 3 28 28 H 1.08993 * 109.47327 * 66.08184 * 1 2 3 29 29 H 1.08999 * 109.47368 * 58.54463 * 7 5 4 30 30 H 1.08995 * 109.47029 * 178.54559 * 7 5 4 31 31 H 1.09002 * 109.47116 * 298.53890 * 7 5 4 32 32 H 1.09000 * 109.46906 * 305.48107 * 10 8 5 33 33 H 1.08996 * 109.47257 * 65.48144 * 10 8 5 34 34 H 1.09004 * 109.46898 * 185.48547 * 10 8 5 35 35 H 1.00902 * 111.00160 * 277.82343 * 13 11 2 36 36 H 1.09000 * 109.46952 * 58.91258 * 14 13 11 37 37 H 1.08991 * 109.47050 * 298.91032 * 14 13 11 38 38 H 1.09000 * 109.47292 * 305.00106 * 15 14 13 39 39 H 1.08999 * 109.47376 * 184.99889 * 15 14 13 40 40 H 1.09001 * 109.47411 * 60.00575 * 17 16 15 41 41 H 1.08999 * 109.47569 * 299.99718 * 17 16 15 42 42 H 0.97001 * 120.00381 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0350 -0.7232 1.1436 5 6 3.3898 -1.0845 0.7974 6 1 4.0537 -0.2287 0.9196 7 6 3.8662 -2.2545 1.6605 8 6 3.3209 -1.5026 -0.6915 9 1 3.2010 -2.5822 -0.7806 10 6 4.5715 -1.0371 -1.4400 11 6 2.0678 -0.7728 -1.2247 12 1 2.3388 -0.0822 -2.0232 13 7 1.0712 -1.7417 -1.7001 14 6 1.2514 -2.0232 -3.1306 15 6 0.2151 -3.0544 -3.5819 16 8 -1.0947 -2.4942 -3.4689 17 6 -2.1421 -3.3804 -3.8684 18 6 -3.4722 -2.6898 -3.7096 19 1 -3.5134 -1.6758 -3.3401 20 6 -4.6365 -3.3528 -4.0350 21 7 -5.7971 -2.7500 -3.8969 22 14 -4.5652 -5.1069 -4.6733 23 1 -4.6390 -6.0528 -3.5309 24 1 -5.7089 -5.3471 -5.5896 25 1 -3.2910 -5.3153 -5.4070 26 1 -0.3633 -1.0219 0.1089 27 1 -0.3634 0.6052 0.8306 28 1 -0.3633 0.4166 -0.9393 29 1 3.2013 -3.1062 1.5170 30 1 4.8794 -2.5315 1.3698 31 1 3.8571 -1.9593 2.7098 32 1 4.7004 0.0362 -1.2998 33 1 5.4441 -1.5617 -1.0510 34 1 4.4608 -1.2540 -2.5025 35 1 1.1054 -2.5915 -1.1572 36 1 2.2535 -2.4172 -3.3000 37 1 1.1213 -1.1037 -3.7011 38 1 0.2867 -3.9411 -2.9520 39 1 0.4043 -3.3296 -4.6195 40 1 -2.1197 -4.2741 -3.2447 41 1 -2.0017 -3.6619 -4.9120 42 1 -6.6162 -3.2163 -4.1262 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599626462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:40 Heat of formation + Delta-G solvation = -122.427368 kcal Electronic energy + Delta-G solvation = -19954.886723 eV Core-core repulsion = 16933.788856 eV Total energy + Delta-G solvation = -3021.097867 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08994 -38.75363 -36.51570 -34.84156 -34.46916 -32.76599 -30.45231 -30.21608 -28.81647 -26.38781 -23.96712 -23.94396 -22.96429 -21.85274 -21.28095 -19.05037 -17.51855 -17.32646 -17.11879 -16.63593 -16.49360 -16.21410 -15.48509 -15.22160 -14.67217 -14.59666 -14.22448 -14.06737 -13.98740 -13.67063 -13.25104 -13.19698 -13.14370 -12.86533 -12.70597 -12.65746 -12.46782 -12.32275 -11.97920 -11.85425 -11.80105 -11.59020 -11.43295 -11.28496 -10.91004 -10.67078 -10.28938 -9.14441 -8.35595 -6.43010 1.33060 1.36524 1.47201 2.30287 2.89832 2.96935 3.09950 3.19163 3.56489 3.69208 4.00584 4.08794 4.21834 4.27519 4.32014 4.41915 4.48122 4.49013 4.53817 4.55929 4.61429 4.67973 4.69557 4.76308 4.94208 4.95896 4.99025 5.04594 5.06120 5.13414 5.17448 5.28802 5.31693 5.46565 5.54497 5.95917 6.02321 6.17612 6.45639 6.61699 6.83022 7.21708 8.81866 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.030571 B = 0.004163 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.666371 B = 6724.206282 C = 7052.952588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.079 3.921 3 H 0.080 0.920 4 O -0.393 6.393 5 C 0.069 3.931 6 H 0.078 0.922 7 C -0.143 4.143 8 C -0.143 4.143 9 H 0.081 0.919 10 C -0.136 4.136 11 C 0.064 3.936 12 H 0.097 0.903 13 N -0.681 5.681 14 C 0.075 3.925 15 C 0.050 3.950 16 O -0.393 6.393 17 C 0.179 3.821 18 C -0.542 4.542 19 H 0.028 0.972 20 C 0.012 3.988 21 N -0.944 5.944 22 Si 0.957 3.043 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.245 1.245 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.341 0.659 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.006 0.994 41 H 0.010 0.990 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.890 0.166 5.690 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.022 3.978 3 H 0.097 0.903 4 O -0.314 6.314 5 C 0.011 3.989 6 H 0.096 0.904 7 C -0.200 4.200 8 C -0.163 4.163 9 H 0.099 0.901 10 C -0.194 4.194 11 C -0.047 4.047 12 H 0.115 0.885 13 N -0.312 5.312 14 C -0.054 4.054 15 C -0.027 4.027 16 O -0.312 6.312 17 C 0.103 3.897 18 C -0.580 4.580 19 H 0.046 0.954 20 C -0.186 4.186 21 N -0.584 5.584 22 Si 0.778 3.222 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.168 1.168 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.024 0.976 41 H 0.028 0.972 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 24.056 0.763 5.809 24.759 hybrid contribution 0.117 -1.119 -0.359 1.182 sum 24.173 -0.356 5.450 24.782 Atomic orbital electron populations 1.21387 0.93474 1.01950 1.00860 1.23055 0.95244 0.94981 0.84558 0.90259 1.89159 1.28161 1.74960 1.39078 1.23240 0.84096 0.97954 0.93589 0.90417 1.21803 1.01861 0.96594 0.99787 1.23343 0.96627 1.00764 0.95612 0.90093 1.21762 0.95845 1.01792 0.99987 1.23073 0.89249 0.94943 0.97398 0.88461 1.60314 1.51046 1.16587 1.03285 1.21924 0.95766 0.98767 0.88929 1.22701 0.83855 0.96385 0.99731 1.87977 1.14433 1.41289 1.87495 1.20278 0.85900 0.89871 0.93625 1.21175 0.90872 1.01084 1.44884 0.95361 1.25853 0.94093 1.03703 0.94943 1.70040 0.98676 1.40102 1.49542 0.85592 0.79287 0.78015 0.79309 1.18548 1.19809 1.16849 0.93176 0.93322 0.92087 0.92838 0.89225 0.92086 0.91804 0.91099 0.92033 0.83960 0.91221 0.91091 0.93611 0.92472 0.97584 0.97219 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 8.82 71.98 0.64 -2.99 16 2 C 0.08 1.97 3.89 31.10 0.12 2.09 16 3 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 4 O -0.39 -10.26 11.04 -148.98 -1.64 -11.91 16 5 C 0.07 1.26 3.48 31.21 0.11 1.37 16 6 H 0.08 1.23 7.83 -2.39 -0.02 1.21 16 7 C -0.14 -2.23 9.54 71.98 0.69 -1.54 16 8 C -0.14 -2.39 2.95 -9.67 -0.03 -2.42 16 9 H 0.08 1.40 7.31 -2.39 -0.02 1.39 16 10 C -0.14 -1.62 8.98 71.98 0.65 -0.97 16 11 C 0.06 1.40 2.95 45.93 0.14 1.54 16 12 H 0.10 1.96 7.41 -2.39 -0.02 1.95 16 13 N -0.68 -18.60 4.68 -486.36 -2.27 -20.87 16 14 C 0.07 1.94 5.92 86.30 0.51 2.45 16 15 C 0.05 1.65 6.21 71.98 0.45 2.10 16 16 O -0.39 -18.46 10.27 -148.98 -1.53 -19.99 16 17 C 0.18 9.16 4.76 71.24 0.34 9.50 16 18 C -0.54 -33.84 9.99 25.60 0.26 -33.59 16 19 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 20 C 0.01 0.71 5.47 84.65 0.46 1.17 16 21 N -0.94 -60.55 13.96 21.45 0.30 -60.25 16 22 Si 0.96 44.06 27.47 68.60 1.88 45.95 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 26 H 0.05 1.75 7.58 -2.39 -0.02 1.73 16 27 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.70 8.09 -2.39 -0.02 0.68 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.34 9.29 8.10 -89.69 -0.73 8.57 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.01 0.31 7.57 -2.39 -0.02 0.30 16 41 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 42 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -72.40 336.21 1.24 -71.17 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.18 Total: 17.20 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 4.32 Total: -21.29 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -1.97 Total: -81.12 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -3.18 Total: -31.90 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Total: -72.40 1.24 -71.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599626462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.262 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds