Wall clock time and date at job start Mon Mar 30 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.33325 * 2 1 4 4 O 1.44429 * 110.37006 * 122.25078 * 2 1 3 5 5 C 1.44431 * 105.27439 * 159.34217 * 4 2 1 6 6 H 1.09002 * 110.37002 * 78.31993 * 5 4 2 7 7 C 1.52996 * 110.46472 * 200.60759 * 5 4 2 8 8 C 1.54476 * 104.80331 * 319.48647 * 5 4 2 9 9 H 1.09002 * 110.51515 * 142.62021 * 8 5 4 10 10 C 1.52994 * 110.51486 * 265.19796 * 8 5 4 11 11 C 1.54475 * 110.37458 * 237.62831 * 2 1 3 12 12 H 1.09003 * 110.51364 * 98.54062 * 11 2 1 13 13 N 1.46903 * 110.50857 * 335.84167 * 11 2 1 14 14 C 1.46899 * 111.00123 * 156.41708 * 13 11 2 15 15 C 1.53003 * 109.47437 * 174.59933 * 14 13 11 16 16 O 1.42895 * 109.47081 * 64.99629 * 15 14 13 17 17 C 1.42899 * 114.00045 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47160 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00163 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00038 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00121 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00105 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47571 * 89.99776 * 22 20 18 24 24 H 1.48504 * 109.47250 * 209.99941 * 22 20 18 25 25 H 1.48500 * 109.47266 * 329.99805 * 22 20 18 26 26 H 1.09002 * 109.46954 * 303.92323 * 1 2 3 27 27 H 1.08999 * 109.46853 * 63.91709 * 1 2 3 28 28 H 1.08988 * 109.47215 * 183.92067 * 1 2 3 29 29 H 1.09004 * 109.47248 * 175.43347 * 7 5 4 30 30 H 1.08996 * 109.47396 * 295.43606 * 7 5 4 31 31 H 1.08997 * 109.46912 * 55.43773 * 7 5 4 32 32 H 1.09007 * 109.47224 * 53.36711 * 10 8 5 33 33 H 1.09004 * 109.47700 * 173.36743 * 10 8 5 34 34 H 1.08997 * 109.47391 * 293.37263 * 10 8 5 35 35 H 1.00898 * 110.99984 * 280.36548 * 13 11 2 36 36 H 1.08998 * 109.47141 * 294.59677 * 14 13 11 37 37 H 1.09001 * 109.47331 * 54.60007 * 14 13 11 38 38 H 1.09000 * 109.47353 * 185.00130 * 15 14 13 39 39 H 1.08998 * 109.46782 * 305.00110 * 15 14 13 40 40 H 1.08997 * 109.47308 * 299.99971 * 17 16 15 41 41 H 1.09000 * 109.47083 * 60.00113 * 17 16 15 42 42 H 0.96996 * 119.99796 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0327 -0.7225 1.1451 5 6 3.3873 -1.0864 0.8007 6 1 4.0525 -0.2315 0.9224 7 6 3.8626 -2.2569 1.6636 8 6 3.3178 -1.5065 -0.6842 9 1 4.2109 -1.1786 -1.2162 10 6 3.1495 -3.0223 -0.8053 11 6 2.0678 -0.7753 -1.2231 12 1 2.3429 -0.0861 -2.0215 13 7 1.0701 -1.7433 -1.6982 14 6 1.2885 -2.0730 -3.1130 15 6 0.3194 -3.1794 -3.5344 16 8 -1.0215 -2.6908 -3.4627 17 6 -2.0109 -3.6514 -3.8376 18 6 -3.3801 -3.0319 -3.7260 19 1 -3.4844 -2.0070 -3.4017 20 6 -4.4998 -3.7735 -4.0379 21 7 -4.3730 -5.0217 -4.4323 22 14 -6.1970 -3.0054 -3.9003 23 1 -6.5605 -2.3728 -5.1937 24 1 -7.1909 -4.0573 -3.5672 25 1 -6.1890 -1.9754 -2.8305 26 1 -0.3633 0.5735 0.8528 27 1 -0.3633 0.4518 -0.9230 28 1 -0.3633 -1.0251 0.0703 29 1 4.8540 -2.5706 1.3364 30 1 3.9063 -1.9449 2.7071 31 1 3.1663 -3.0893 1.5622 32 1 2.2941 -3.3417 -0.2099 33 1 2.9845 -3.2875 -1.8496 34 1 4.0499 -3.5180 -0.4425 35 1 1.0740 -2.5758 -1.1282 36 1 1.1157 -1.1867 -3.7235 37 1 2.3139 -2.4157 -3.2521 38 1 0.5403 -3.4859 -4.5568 39 1 0.4310 -4.0337 -2.8668 40 1 -1.8385 -3.9681 -4.8662 41 1 -1.9476 -4.5153 -3.1760 42 1 -5.1607 -5.5435 -4.6514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599626463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:43 Heat of formation + Delta-G solvation = -91.631455 kcal Electronic energy + Delta-G solvation = -20163.228373 eV Core-core repulsion = 17143.465917 eV Total energy + Delta-G solvation = -3019.762456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39303 -37.03103 -35.40207 -33.72984 -32.69237 -31.25551 -28.99273 -28.08033 -27.04839 -26.15069 -23.22056 -22.28610 -21.63159 -20.66638 -19.69361 -17.06732 -16.39014 -16.17837 -15.84078 -15.23116 -14.91157 -14.52967 -14.26316 -14.12735 -13.83477 -13.27889 -12.98209 -12.82556 -12.63108 -12.20345 -11.94230 -11.85930 -11.65908 -11.64650 -11.26363 -11.19093 -10.88624 -10.79486 -10.77945 -10.71413 -10.51182 -10.37085 -9.95619 -9.68776 -9.04719 -8.76873 -8.13717 -8.07364 -6.06226 -4.07088 3.34004 3.38846 3.45048 3.78402 4.18855 4.39317 4.45329 4.57460 4.74752 4.88689 4.97143 5.15278 5.20767 5.25087 5.30455 5.37111 5.41601 5.47367 5.55365 5.62569 5.65798 5.70190 5.77054 5.87806 5.91212 6.00346 6.09089 6.10985 6.16592 6.27831 6.34160 6.74039 6.97023 7.14080 7.22959 7.47861 7.59376 7.85709 8.21520 8.65791 9.07498 9.57734 11.05510 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.029542 B = 0.004262 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.560979 B = 6567.980680 C = 7001.953466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.079 3.921 3 H 0.064 0.936 4 O -0.368 6.368 5 C 0.075 3.925 6 H 0.063 0.937 7 C -0.147 4.147 8 C -0.154 4.154 9 H 0.080 0.920 10 C -0.154 4.154 11 C 0.062 3.938 12 H 0.088 0.912 13 N -0.661 5.661 14 C 0.062 3.938 15 C 0.064 3.936 16 O -0.379 6.379 17 C 0.194 3.806 18 C -0.510 4.510 19 H 0.067 0.933 20 C 0.055 3.945 21 N -0.901 5.901 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.271 1.271 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.347 0.653 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.033 0.967 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.126 6.584 8.065 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.021 3.979 3 H 0.082 0.918 4 O -0.288 6.288 5 C 0.017 3.983 6 H 0.081 0.919 7 C -0.205 4.205 8 C -0.175 4.175 9 H 0.098 0.902 10 C -0.211 4.211 11 C -0.050 4.050 12 H 0.106 0.894 13 N -0.295 5.295 14 C -0.066 4.066 15 C -0.014 4.014 16 O -0.299 6.299 17 C 0.119 3.881 18 C -0.548 4.548 19 H 0.085 0.915 20 C -0.145 4.145 21 N -0.540 5.540 22 Si 0.734 3.266 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.196 1.196 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.170 0.830 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.019 0.981 41 H 0.021 0.979 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.348 7.021 8.123 20.402 hybrid contribution 0.179 -0.559 -0.288 0.654 sum 17.527 6.462 7.836 20.257 Atomic orbital electron populations 1.21504 0.91520 1.03914 1.01290 1.23059 0.96859 0.93924 0.84010 0.91817 1.89179 1.26365 1.74687 1.38567 1.22877 0.85366 0.96821 0.93221 0.91889 1.21867 1.01067 0.97910 0.99611 1.23196 1.00078 0.97191 0.96994 0.90159 1.21990 1.02325 0.94476 1.02316 1.22982 0.89246 0.95204 0.97545 0.89373 1.60470 1.48289 1.17725 1.03003 1.22100 0.95602 0.99348 0.89594 1.22243 0.86110 0.94771 0.98321 1.87957 1.12525 1.40374 1.89019 1.20184 0.86199 0.87916 0.93782 1.21065 0.89574 0.99403 1.44769 0.91484 1.24943 0.99558 0.94836 0.95211 1.69968 1.30039 1.08172 1.45868 0.86350 0.82852 0.78823 0.78550 1.20545 1.21152 1.19567 0.93673 0.90745 0.90565 0.91481 0.92242 0.91259 0.91470 0.91988 0.91984 0.82970 0.90461 0.94628 0.94227 0.94926 0.98054 0.97916 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.88 37.16 0.33 -1.43 16 2 C 0.08 0.99 3.89 -25.96 -0.10 0.89 16 3 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 4 O -0.37 -4.90 11.04 -35.23 -0.39 -5.29 16 5 C 0.08 0.77 3.83 -25.96 -0.10 0.67 16 6 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 7 C -0.15 -1.31 8.44 37.16 0.31 -1.00 16 8 C -0.15 -1.52 3.62 -89.06 -0.32 -1.84 16 9 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 10 C -0.15 -1.51 6.59 37.15 0.24 -1.27 16 11 C 0.06 0.73 3.28 -66.14 -0.22 0.51 16 12 H 0.09 0.98 7.89 -51.93 -0.41 0.57 16 13 N -0.66 -9.50 4.43 -105.07 -0.47 -9.97 16 14 C 0.06 0.90 5.27 -3.82 -0.02 0.88 16 15 C 0.06 1.17 6.17 37.16 0.23 1.40 16 16 O -0.38 -9.21 10.27 -35.23 -0.36 -9.57 16 17 C 0.19 5.39 5.69 36.01 0.20 5.59 16 18 C -0.51 -15.25 9.43 -34.44 -0.32 -15.58 16 19 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 22 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.24 7.47 -51.94 -0.39 0.85 16 29 H 0.07 0.48 7.79 -51.93 -0.40 0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.67 6.54 -51.93 -0.34 0.33 16 32 H 0.07 0.74 6.02 -51.93 -0.31 0.43 16 33 H 0.06 0.63 5.49 -51.93 -0.29 0.35 16 34 H 0.06 0.51 7.13 -51.93 -0.37 0.14 16 35 H 0.35 5.08 5.73 -39.29 -0.22 4.86 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.04 0.43 6.37 -51.93 -0.33 0.10 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -31.62 326.54 -7.70 -39.32 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.26 Total: -0.35 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 0.14 Total: -9.65 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.27 Total: -36.53 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.75 Total: -14.87 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.62 -7.70 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599626463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.315 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds