Wall clock time and date at job start Mon Mar 30 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.33325 * 2 1 4 4 O 1.44429 * 110.37006 * 122.25078 * 2 1 3 5 5 C 1.44431 * 105.27439 * 159.34217 * 4 2 1 6 6 H 1.09002 * 110.37002 * 78.31993 * 5 4 2 7 7 C 1.52996 * 110.46472 * 200.60759 * 5 4 2 8 8 C 1.54476 * 104.80331 * 319.48647 * 5 4 2 9 9 H 1.09002 * 110.51515 * 142.62021 * 8 5 4 10 10 C 1.52994 * 110.51486 * 265.19796 * 8 5 4 11 11 C 1.54475 * 110.37458 * 237.62831 * 2 1 3 12 12 H 1.09003 * 110.51364 * 98.54062 * 11 2 1 13 13 N 1.46903 * 110.50857 * 335.84167 * 11 2 1 14 14 C 1.46899 * 111.00123 * 156.41708 * 13 11 2 15 15 C 1.53003 * 109.47437 * 174.59933 * 14 13 11 16 16 O 1.42895 * 109.47081 * 64.99629 * 15 14 13 17 17 C 1.42899 * 114.00045 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47160 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00163 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00038 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00121 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00105 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47571 * 89.99776 * 22 20 18 24 24 H 1.48504 * 109.47250 * 209.99941 * 22 20 18 25 25 H 1.48500 * 109.47266 * 329.99805 * 22 20 18 26 26 H 1.09002 * 109.46954 * 303.92323 * 1 2 3 27 27 H 1.08999 * 109.46853 * 63.91709 * 1 2 3 28 28 H 1.08988 * 109.47215 * 183.92067 * 1 2 3 29 29 H 1.09004 * 109.47248 * 175.43347 * 7 5 4 30 30 H 1.08996 * 109.47396 * 295.43606 * 7 5 4 31 31 H 1.08997 * 109.46912 * 55.43773 * 7 5 4 32 32 H 1.09007 * 109.47224 * 53.36711 * 10 8 5 33 33 H 1.09004 * 109.47700 * 173.36743 * 10 8 5 34 34 H 1.08997 * 109.47391 * 293.37263 * 10 8 5 35 35 H 1.00898 * 110.99984 * 280.36548 * 13 11 2 36 36 H 1.08998 * 109.47141 * 294.59677 * 14 13 11 37 37 H 1.09001 * 109.47331 * 54.60007 * 14 13 11 38 38 H 1.09000 * 109.47353 * 185.00130 * 15 14 13 39 39 H 1.08998 * 109.46782 * 305.00110 * 15 14 13 40 40 H 1.08997 * 109.47308 * 299.99971 * 17 16 15 41 41 H 1.09000 * 109.47083 * 60.00113 * 17 16 15 42 42 H 0.96996 * 119.99796 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0327 -0.7225 1.1451 5 6 3.3873 -1.0864 0.8007 6 1 4.0525 -0.2315 0.9224 7 6 3.8626 -2.2569 1.6636 8 6 3.3178 -1.5065 -0.6842 9 1 4.2109 -1.1786 -1.2162 10 6 3.1495 -3.0223 -0.8053 11 6 2.0678 -0.7753 -1.2231 12 1 2.3429 -0.0861 -2.0215 13 7 1.0701 -1.7433 -1.6982 14 6 1.2885 -2.0730 -3.1130 15 6 0.3194 -3.1794 -3.5344 16 8 -1.0215 -2.6908 -3.4627 17 6 -2.0109 -3.6514 -3.8376 18 6 -3.3801 -3.0319 -3.7260 19 1 -3.4844 -2.0070 -3.4017 20 6 -4.4998 -3.7735 -4.0379 21 7 -4.3730 -5.0217 -4.4323 22 14 -6.1970 -3.0054 -3.9003 23 1 -6.5605 -2.3728 -5.1937 24 1 -7.1909 -4.0573 -3.5672 25 1 -6.1890 -1.9754 -2.8305 26 1 -0.3633 0.5735 0.8528 27 1 -0.3633 0.4518 -0.9230 28 1 -0.3633 -1.0251 0.0703 29 1 4.8540 -2.5706 1.3364 30 1 3.9063 -1.9449 2.7071 31 1 3.1663 -3.0893 1.5622 32 1 2.2941 -3.3417 -0.2099 33 1 2.9845 -3.2875 -1.8496 34 1 4.0499 -3.5180 -0.4425 35 1 1.0740 -2.5758 -1.1282 36 1 1.1157 -1.1867 -3.7235 37 1 2.3139 -2.4157 -3.2521 38 1 0.5403 -3.4859 -4.5568 39 1 0.4310 -4.0337 -2.8668 40 1 -1.8385 -3.9681 -4.8662 41 1 -1.9476 -4.5153 -3.1760 42 1 -5.1607 -5.5435 -4.6514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599626463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:43 Heat of formation + Delta-G solvation = -113.154793 kcal Electronic energy + Delta-G solvation = -20164.161695 eV Core-core repulsion = 17143.465917 eV Total energy + Delta-G solvation = -3020.695778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30082 -38.70418 -36.67633 -34.90058 -34.56714 -32.47229 -30.07296 -29.49249 -28.48682 -27.43380 -24.48129 -24.11980 -22.98257 -21.60613 -20.54146 -18.65753 -17.91053 -17.58788 -17.12076 -16.62189 -16.31343 -16.13942 -15.48083 -15.40376 -14.79992 -14.71581 -14.42852 -13.93930 -13.66752 -13.49198 -13.26808 -13.04311 -12.91870 -12.83155 -12.70551 -12.54887 -12.40116 -12.37736 -12.08605 -11.86643 -11.73905 -11.48440 -11.35447 -11.24610 -10.85280 -10.61956 -10.18136 -9.15248 -8.30895 -6.42564 1.40250 1.43108 1.55426 2.36053 2.91958 3.02961 3.14890 3.26861 3.59344 3.75057 3.96920 4.09128 4.21810 4.25257 4.33198 4.42113 4.45305 4.51208 4.56048 4.61088 4.70720 4.71422 4.76187 4.84726 4.87403 4.90883 5.03179 5.08159 5.14276 5.18176 5.21088 5.23474 5.37176 5.56402 5.57138 5.98741 6.04848 6.19903 6.46203 6.59035 6.87681 7.29742 8.81529 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.029542 B = 0.004262 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.560979 B = 6567.980680 C = 7001.953466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.079 3.921 3 H 0.083 0.917 4 O -0.393 6.393 5 C 0.069 3.931 6 H 0.079 0.921 7 C -0.146 4.146 8 C -0.145 4.145 9 H 0.103 0.897 10 C -0.151 4.151 11 C 0.061 3.939 12 H 0.100 0.900 13 N -0.681 5.681 14 C 0.075 3.925 15 C 0.054 3.946 16 O -0.394 6.394 17 C 0.209 3.791 18 C -0.545 4.545 19 H 0.060 0.940 20 C 0.007 3.993 21 N -0.932 5.932 22 Si 0.982 3.018 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.266 1.266 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.343 0.657 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.035 0.965 40 H -0.016 1.016 41 H -0.018 1.018 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.193 7.538 8.198 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.021 3.979 3 H 0.101 0.899 4 O -0.314 6.314 5 C 0.012 3.988 6 H 0.097 0.903 7 C -0.203 4.203 8 C -0.166 4.166 9 H 0.122 0.878 10 C -0.208 4.208 11 C -0.050 4.050 12 H 0.118 0.882 13 N -0.315 5.315 14 C -0.053 4.053 15 C -0.024 4.024 16 O -0.314 6.314 17 C 0.134 3.866 18 C -0.582 4.582 19 H 0.078 0.922 20 C -0.192 4.192 21 N -0.571 5.571 22 Si 0.805 3.195 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.190 1.190 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.166 0.834 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.002 0.998 41 H 0.000 1.000 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.449 7.979 8.255 21.730 hybrid contribution -0.067 -0.888 -0.300 0.939 sum 18.382 7.092 7.955 21.248 Atomic orbital electron populations 1.21407 0.93385 1.01996 1.01014 1.23078 0.95451 0.95019 0.84346 0.89919 1.89157 1.28175 1.75001 1.39027 1.23113 0.84210 0.97858 0.93617 0.90307 1.21883 1.01866 0.97011 0.99525 1.23160 0.99784 0.96784 0.96837 0.87832 1.21958 1.02397 0.94747 1.01726 1.23034 0.89483 0.94894 0.97594 0.88179 1.60423 1.50171 1.18104 1.02832 1.21983 0.95903 0.97754 0.89686 1.22611 0.83931 0.96681 0.99148 1.87913 1.14647 1.39919 1.88918 1.19787 0.87002 0.87730 0.92123 1.21384 0.91169 0.99499 1.46197 0.92190 1.25938 1.03974 0.95227 0.94016 1.70071 1.31734 1.09493 1.45832 0.85204 0.77093 0.78167 0.79080 1.19193 1.19910 1.19013 0.93149 0.91655 0.93351 0.89238 0.92309 0.92474 0.93355 0.92375 0.90172 0.83416 0.90835 0.91177 0.93419 0.94655 0.99846 1.00047 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 8.88 71.98 0.64 -2.82 16 2 C 0.08 1.89 3.89 31.09 0.12 2.01 16 3 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 4 O -0.39 -10.09 11.04 -148.98 -1.64 -11.74 16 5 C 0.07 1.27 3.83 31.09 0.12 1.39 16 6 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 7 C -0.15 -2.30 8.44 71.98 0.61 -1.70 16 8 C -0.15 -2.49 3.62 -9.78 -0.04 -2.52 16 9 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 10 C -0.15 -2.68 6.59 71.98 0.47 -2.21 16 11 C 0.06 1.33 3.28 45.93 0.15 1.48 16 12 H 0.10 1.96 7.89 -2.39 -0.02 1.94 16 13 N -0.68 -19.27 4.43 -486.32 -2.15 -21.43 16 14 C 0.08 2.10 5.27 86.30 0.45 2.55 16 15 C 0.05 1.97 6.17 71.98 0.44 2.42 16 16 O -0.39 -19.67 10.27 -148.98 -1.53 -21.20 16 17 C 0.21 12.04 5.69 71.24 0.41 12.44 16 18 C -0.54 -33.33 9.43 25.60 0.24 -33.09 16 19 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 20 C 0.01 0.39 5.46 84.65 0.46 0.85 16 21 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 22 Si 0.98 45.37 29.54 68.60 2.03 47.39 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.63 7.47 -2.39 -0.02 1.62 16 29 H 0.09 1.00 7.79 -2.39 -0.02 0.98 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.04 6.54 -2.39 -0.02 1.03 16 32 H 0.05 1.05 6.02 -2.38 -0.01 1.03 16 33 H 0.06 1.06 5.49 -2.39 -0.01 1.05 16 34 H 0.08 1.12 7.13 -2.39 -0.02 1.10 16 35 H 0.34 10.12 5.73 -89.70 -0.51 9.60 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 1.50 6.37 -2.39 -0.02 1.48 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 40 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 42 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -68.88 326.54 1.54 -67.35 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.47 Total: 15.49 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 4.08 Total: -19.18 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -1.87 Total: -78.12 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -3.18 Total: -32.94 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.88 1.54 -67.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599626463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.806 kcal (2) G-P(sol) polarization free energy of solvation -68.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds