Wall clock time and date at job start Mon Mar 30 2020 05:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.55374 * 2 1 4 4 O 1.44382 * 110.62145 * 123.04867 * 2 1 3 5 5 C 1.43741 * 106.98021 * 158.56313 * 4 2 1 6 6 H 1.09002 * 109.87947 * 92.90991 * 5 4 2 7 7 C 1.52998 * 110.00290 * 213.99181 * 5 4 2 8 8 C 1.54104 * 107.29067 * 333.48705 * 5 4 2 9 9 H 1.09003 * 110.48376 * 243.35075 * 8 5 4 10 10 C 1.52997 * 110.48646 * 120.83985 * 8 5 4 11 11 C 1.54805 * 104.18715 * 2.03032 * 8 5 4 12 12 H 1.09010 * 110.90550 * 262.64576 * 11 8 5 13 13 N 1.46896 * 110.90723 * 139.08316 * 11 8 5 14 14 C 1.46897 * 111.00390 * 154.99687 * 13 11 8 15 15 C 1.53005 * 109.47101 * 179.97438 * 14 13 11 16 16 O 1.42901 * 109.47229 * 65.00172 * 15 14 13 17 17 C 1.42892 * 114.00183 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47332 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99950 * 359.97438 * 18 17 16 20 20 C 1.37884 * 120.00262 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99758 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00032 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47066 * 59.99779 * 22 20 18 24 24 H 1.48499 * 109.46965 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47092 * 300.00311 * 22 20 18 26 26 H 1.09010 * 109.46876 * 182.87914 * 1 2 3 27 27 H 1.08995 * 109.47412 * 302.87819 * 1 2 3 28 28 H 1.09004 * 109.47164 * 62.88490 * 1 2 3 29 29 H 1.09003 * 109.46790 * 178.20789 * 7 5 4 30 30 H 1.08999 * 109.47529 * 298.21110 * 7 5 4 31 31 H 1.08998 * 109.47103 * 58.21485 * 7 5 4 32 32 H 1.08998 * 109.47256 * 61.45174 * 10 8 5 33 33 H 1.08996 * 109.47104 * 181.45061 * 10 8 5 34 34 H 1.08999 * 109.47368 * 301.45161 * 10 8 5 35 35 H 1.00907 * 111.00523 * 31.03670 * 13 11 8 36 36 H 1.08998 * 109.47176 * 299.99754 * 14 13 11 37 37 H 1.09003 * 109.47159 * 59.99912 * 14 13 11 38 38 H 1.09000 * 109.46747 * 184.99963 * 15 14 13 39 39 H 1.08997 * 109.47173 * 305.00002 * 15 14 13 40 40 H 1.09005 * 109.47351 * 300.00065 * 17 16 15 41 41 H 1.09001 * 109.47352 * 59.99811 * 17 16 15 42 42 H 0.97001 * 119.99713 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 8 2.0385 -0.7369 1.1327 5 6 3.3840 -1.1266 0.8102 6 1 4.0854 -0.3799 1.1826 7 6 3.6972 -2.4895 1.4309 8 6 3.4795 -1.2156 -0.7253 9 1 3.6976 -2.2376 -1.0352 10 6 4.5502 -0.2578 -1.2516 11 6 2.0759 -0.7875 -1.2182 12 1 1.4552 -1.6586 -1.4288 13 7 2.1771 0.0790 -2.4001 14 6 0.9528 0.0111 -3.2090 15 6 1.0955 0.9251 -4.4278 16 8 2.1357 0.4315 -5.2742 17 6 2.3516 1.2170 -6.4482 18 6 3.4636 0.6078 -7.2627 19 1 3.9565 -0.2893 -6.9179 20 6 3.8525 1.1963 -8.4474 21 7 3.2526 2.2889 -8.8669 22 14 5.2313 0.4415 -9.4566 23 1 4.8582 -0.9414 -9.8484 24 1 5.4564 1.2584 -10.6762 25 1 6.4759 0.4079 -8.6472 26 1 -0.3633 -1.0265 0.0516 27 1 -0.3634 0.5578 0.8630 28 1 -0.3634 0.4684 -0.9147 29 1 4.7076 -2.7908 1.1548 30 1 3.6224 -2.4203 2.5162 31 1 2.9847 -3.2282 1.0640 32 1 5.5206 -0.5365 -0.8410 33 1 4.5860 -0.3152 -2.3394 34 1 4.3068 0.7608 -0.9493 35 1 2.9886 -0.1554 -2.9520 36 1 0.7928 -1.0148 -3.5406 37 1 0.1025 0.3360 -2.6093 38 1 0.1559 0.9437 -4.9799 39 1 1.3433 1.9341 -4.0982 40 1 1.4380 1.2413 -7.0422 41 1 2.6253 2.2322 -6.1609 42 1 3.5260 2.7026 -9.7006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599626464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:46 Heat of formation + Delta-G solvation = -105.851732 kcal Electronic energy + Delta-G solvation = -19877.365269 eV Core-core repulsion = 16856.986176 eV Total energy + Delta-G solvation = -3020.379093 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18508 -37.12579 -35.36935 -33.63437 -32.75804 -31.43051 -29.63428 -28.38503 -26.83705 -25.62060 -23.01422 -22.36618 -21.45641 -21.21649 -20.01075 -16.53782 -16.40287 -16.02843 -15.89674 -15.44558 -15.01250 -14.78308 -14.40521 -13.91280 -13.59740 -13.22916 -13.13644 -12.97293 -12.80714 -12.33593 -12.27040 -12.03652 -11.82942 -11.59999 -11.36070 -11.27574 -10.94367 -10.81592 -10.74367 -10.68626 -10.53122 -10.40622 -10.01534 -9.71729 -9.14272 -8.84598 -8.26777 -8.19380 -6.12733 -4.14843 3.30194 3.33272 3.36668 3.67872 4.28244 4.33268 4.38135 4.56746 4.80956 4.89709 5.04587 5.11634 5.17892 5.23681 5.30701 5.38254 5.39893 5.43148 5.50890 5.61823 5.72112 5.73018 5.79331 5.88614 5.92734 5.98270 6.02640 6.08661 6.13717 6.26680 6.31773 6.35314 6.87567 7.09086 7.20960 7.41744 7.59257 7.76321 8.13136 8.55128 8.97679 9.50047 10.98721 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.028930 B = 0.004071 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.605656 B = 6876.815186 C = 7612.444604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.083 3.917 3 H 0.079 0.921 4 O -0.377 6.377 5 C 0.080 3.920 6 H 0.069 0.931 7 C -0.150 4.150 8 C -0.128 4.128 9 H 0.082 0.918 10 C -0.141 4.141 11 C 0.060 3.940 12 H 0.059 0.941 13 N -0.674 5.674 14 C 0.060 3.940 15 C 0.062 3.938 16 O -0.400 6.400 17 C 0.198 3.802 18 C -0.516 4.516 19 H 0.065 0.935 20 C 0.057 3.943 21 N -0.898 5.898 22 Si 0.908 3.092 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.361 0.639 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.004 0.996 41 H 0.006 0.994 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 -5.996 18.272 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.025 3.975 3 H 0.097 0.903 4 O -0.296 6.296 5 C 0.022 3.978 6 H 0.087 0.913 7 C -0.208 4.208 8 C -0.147 4.147 9 H 0.101 0.899 10 C -0.198 4.198 11 C -0.051 4.051 12 H 0.077 0.923 13 N -0.310 5.310 14 C -0.069 4.069 15 C -0.016 4.016 16 O -0.320 6.320 17 C 0.124 3.876 18 C -0.555 4.555 19 H 0.083 0.917 20 C -0.144 4.144 21 N -0.537 5.537 22 Si 0.735 3.265 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.184 0.816 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.398 -5.513 18.672 19.616 hybrid contribution 0.678 -0.857 -1.331 1.722 sum -1.720 -6.370 17.340 18.553 Atomic orbital electron populations 1.21858 0.93565 1.02446 1.02493 1.23117 0.94646 0.95770 0.83952 0.90293 1.88851 1.27784 1.73746 1.39210 1.22728 0.84988 0.96592 0.93511 0.91325 1.21931 1.01653 0.95898 1.01275 1.22724 0.95807 1.00884 0.95271 0.89916 1.21736 0.96778 0.99400 1.01922 1.23093 0.95501 0.94239 0.92270 0.92288 1.60600 1.06286 1.54847 1.09281 1.22133 0.92891 0.98644 0.93183 1.22296 0.91848 0.96855 0.90607 1.87777 1.53677 1.54234 1.36320 1.20165 0.96015 0.90596 0.80868 1.21008 1.17700 1.11622 1.05129 0.91712 1.24944 0.97195 0.94978 0.97308 1.69952 1.41830 1.19460 1.22461 0.86403 0.81889 0.79068 0.79148 1.20058 1.21130 1.20004 0.92258 0.92113 0.90682 0.91340 0.92084 0.92066 0.92694 0.91287 0.91567 0.81576 0.94693 0.90410 0.94123 0.93500 0.97843 0.97605 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.55 37.16 0.35 -1.19 16 2 C 0.08 1.01 3.67 -25.68 -0.09 0.91 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 O -0.38 -4.82 10.89 -35.23 -0.38 -5.20 16 5 C 0.08 0.87 3.72 -26.16 -0.10 0.77 16 6 H 0.07 0.72 7.69 -51.93 -0.40 0.32 16 7 C -0.15 -1.36 9.37 37.16 0.35 -1.01 16 8 C -0.13 -1.43 3.19 -89.09 -0.28 -1.72 16 9 H 0.08 0.89 7.70 -51.93 -0.40 0.49 16 10 C -0.14 -1.61 8.11 37.16 0.30 -1.31 16 11 C 0.06 0.74 2.80 -65.71 -0.18 0.56 16 12 H 0.06 0.75 7.74 -51.92 -0.40 0.35 16 13 N -0.67 -9.63 5.77 -104.61 -0.60 -10.24 16 14 C 0.06 0.89 5.94 -3.82 -0.02 0.87 16 15 C 0.06 1.13 6.28 37.16 0.23 1.36 16 16 O -0.40 -9.38 9.85 -35.23 -0.35 -9.72 16 17 C 0.20 5.38 5.69 36.00 0.20 5.59 16 18 C -0.52 -15.06 9.43 -34.44 -0.32 -15.38 16 19 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 22 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.76 5.81 -51.93 -0.30 0.46 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.36 5.72 5.84 -39.29 -0.23 5.49 16 36 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.08 0.97 5.70 -51.93 -0.30 0.67 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -30.34 332.66 -7.67 -38.01 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.40 Total: 0.55 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 0.34 Total: -9.01 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.13 Total: -36.29 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.73 Total: -14.92 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.34 -7.67 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599626464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.845 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds