Wall clock time and date at job start Mon Mar 30 2020 04:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.55134 * 2 1 4 4 C 1.54998 * 110.62242 * 237.11753 * 2 1 3 5 5 C 1.54802 * 102.09454 * 204.47477 * 4 2 1 6 6 H 1.08997 * 110.49133 * 262.06790 * 5 4 2 7 7 C 1.53000 * 110.48570 * 139.55927 * 5 4 2 8 8 N 1.46905 * 109.47234 * 66.45448 * 7 5 4 9 9 C 1.46902 * 110.99800 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.46626 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.47256 * 65.00075 * 10 9 8 12 12 C 1.42891 * 113.99823 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47131 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00143 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00302 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99901 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00127 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47041 * 89.99986 * 17 15 13 19 19 H 1.48499 * 109.47407 * 210.00256 * 17 15 13 20 20 H 1.48500 * 109.47108 * 330.00368 * 17 15 13 21 21 C 1.54103 * 104.19035 * 20.88481 * 5 4 2 22 22 H 1.09003 * 109.88044 * 121.45083 * 21 5 4 23 23 C 1.52998 * 109.87561 * 242.60567 * 21 5 4 24 24 O 1.43746 * 107.29108 * 2.02488 * 21 5 4 25 25 H 1.09006 * 109.47099 * 182.87687 * 1 2 3 26 26 H 1.08996 * 109.47586 * 302.87740 * 1 2 3 27 27 H 1.09002 * 109.47446 * 62.88173 * 1 2 3 28 28 H 1.09004 * 110.90314 * 86.27697 * 4 2 1 29 29 H 1.09003 * 110.93748 * 322.69322 * 4 2 1 30 30 H 1.09002 * 109.47089 * 306.45438 * 7 5 4 31 31 H 1.09001 * 109.47170 * 186.45218 * 7 5 4 32 32 H 1.00904 * 110.99696 * 56.04558 * 8 7 5 33 33 H 1.08993 * 109.47737 * 60.00169 * 9 8 7 34 34 H 1.09000 * 109.47263 * 299.99731 * 9 8 7 35 35 H 1.09004 * 109.46579 * 184.99513 * 10 9 8 36 36 H 1.08992 * 109.47046 * 304.99696 * 10 9 8 37 37 H 1.09007 * 109.47137 * 299.99376 * 12 11 10 38 38 H 1.08997 * 109.47704 * 59.99595 * 12 11 10 39 39 H 0.96993 * 119.99882 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.47400 * 59.99989 * 23 21 5 41 41 H 1.09000 * 109.46759 * 179.97438 * 23 21 5 42 42 H 1.08999 * 109.46872 * 299.99451 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0759 -0.7876 -1.2182 5 6 3.4795 -1.2156 -0.7252 6 1 4.2409 -0.5329 -1.1024 7 6 3.7855 -2.6501 -1.1605 8 7 3.9006 -2.7038 -2.6240 9 6 4.1941 -4.0693 -3.0792 10 6 4.3071 -4.0849 -4.6050 11 8 5.4328 -3.3020 -5.0074 12 6 5.6289 -3.2502 -6.4219 13 6 6.8358 -2.4023 -6.7310 14 1 7.3968 -1.9481 -5.9276 15 6 7.2240 -2.2064 -8.0394 16 7 6.5412 -2.7599 -9.0178 17 14 8.7195 -1.1549 -8.4226 18 1 9.9324 -2.0113 -8.4518 19 1 8.5413 -0.5038 -9.7453 20 1 8.8740 -0.1137 -7.3751 21 6 3.3839 -1.1266 0.8103 22 1 3.6044 -2.0983 1.2523 23 6 4.3684 -0.0786 1.3329 24 8 2.0384 -0.7370 1.1327 25 1 -0.3634 -1.0264 0.0516 26 1 -0.3634 0.5578 0.8630 27 1 -0.3634 0.4684 -0.9147 28 1 2.1509 -0.1445 -2.0952 29 1 1.4552 -1.6585 -1.4289 30 1 2.9798 -3.3082 -0.8350 31 1 4.7237 -2.9741 -0.7102 32 1 4.5974 -2.0539 -2.9560 33 1 3.3911 -4.7370 -2.7672 34 1 5.1351 -4.4036 -2.6422 35 1 4.4365 -5.1111 -4.9492 36 1 3.3996 -3.6673 -5.0408 37 1 5.7855 -4.2589 -6.8042 38 1 4.7487 -2.8149 -6.8951 39 1 6.8141 -2.6218 -9.9382 40 1 4.1284 0.8928 0.9007 41 1 4.2950 -0.0208 2.4188 42 1 5.3829 -0.3609 1.0514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686517847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:28 Heat of formation + Delta-G solvation = -115.136531 kcal Electronic energy + Delta-G solvation = -19292.139077 eV Core-core repulsion = 16271.357365 eV Total energy + Delta-G solvation = -3020.781712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03111 -37.24438 -35.62533 -32.99159 -32.70160 -32.29587 -29.65826 -28.28353 -26.80751 -25.31303 -22.76459 -22.36724 -21.43159 -21.11132 -20.30472 -16.85331 -16.50230 -16.16670 -15.70636 -15.29569 -14.90823 -14.74560 -14.38482 -14.31878 -13.75959 -13.42314 -13.11091 -13.03773 -12.72599 -12.31895 -12.21409 -11.99463 -11.87331 -11.64408 -11.39617 -11.31585 -10.90749 -10.82497 -10.81269 -10.78173 -10.62925 -10.41733 -10.01478 -9.72655 -9.12339 -8.84051 -8.23219 -8.18538 -6.12351 -4.14294 3.28777 3.33890 3.38833 3.69507 4.12654 4.33403 4.54391 4.63876 4.78260 4.92412 4.94791 5.05816 5.15907 5.22416 5.24102 5.24349 5.35147 5.41839 5.50414 5.60641 5.62521 5.69611 5.73057 5.82189 5.88886 5.94603 5.99163 6.06251 6.10067 6.18109 6.21787 6.33363 6.85597 7.09889 7.18850 7.42523 7.62175 7.77287 8.13830 8.56159 8.98738 9.50611 10.99184 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.003464 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.913041 B = 8081.484685 C = 8364.060700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 H 0.066 0.934 4 C -0.130 4.130 5 C -0.117 4.117 6 H 0.085 0.915 7 C 0.068 3.932 8 N -0.686 5.686 9 C 0.066 3.934 10 C 0.062 3.938 11 O -0.400 6.400 12 C 0.197 3.803 13 C -0.515 4.515 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.908 3.092 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.078 3.922 22 H 0.091 0.909 23 C -0.170 4.170 24 O -0.372 6.372 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.355 0.645 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.004 0.996 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 3.000 18.332 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 H 0.084 0.916 4 C -0.168 4.168 5 C -0.136 4.136 6 H 0.103 0.897 7 C -0.061 4.061 8 N -0.318 5.318 9 C -0.063 4.063 10 C -0.016 4.016 11 O -0.320 6.320 12 C 0.123 3.877 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.735 3.265 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.020 3.980 22 H 0.109 0.891 23 C -0.228 4.228 24 O -0.292 6.292 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.174 0.826 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.769 2.971 18.344 20.995 hybrid contribution 1.698 0.280 -0.527 1.800 sum -8.071 3.250 17.817 19.828 Atomic orbital electron populations 1.21755 0.93375 1.02880 1.02190 1.23182 0.95008 0.95309 0.85611 0.91644 1.23094 0.95226 1.00800 0.97655 1.22597 0.98836 0.97833 0.94344 0.89702 1.21970 0.99772 0.95351 0.89021 1.60452 1.54581 1.07856 1.08947 1.21941 0.99099 0.90286 0.94969 1.22293 0.90974 0.94991 0.93323 1.87780 1.46094 1.70754 1.27357 1.20171 0.96493 0.96113 0.74918 1.21051 1.11371 1.30599 0.92331 0.91652 1.24951 0.97526 0.96235 0.95795 1.69961 1.39823 1.44338 0.99593 0.86340 0.82227 0.80254 0.77682 1.20494 1.21050 1.19648 1.22725 0.83068 0.98075 0.94174 0.89069 1.22278 0.99231 0.99535 1.01715 1.88889 1.27379 1.73381 1.39552 0.91794 0.92249 0.91085 0.90068 0.89987 0.91098 0.95336 0.82553 0.90748 0.94824 0.94176 0.93559 0.97843 0.97615 0.92637 0.92329 0.92070 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.66 37.15 0.36 -0.89 16 2 C 0.07 0.67 3.92 -25.68 -0.10 0.57 16 3 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 4 C -0.13 -1.40 5.95 -24.73 -0.15 -1.54 16 5 C -0.12 -1.26 2.86 -89.09 -0.26 -1.51 16 6 H 0.08 0.94 7.70 -51.93 -0.40 0.54 16 7 C 0.07 0.80 4.79 -3.82 -0.02 0.78 16 8 N -0.69 -9.88 6.31 -113.77 -0.72 -10.60 16 9 C 0.07 0.99 6.11 -3.82 -0.02 0.97 16 10 C 0.06 1.15 6.28 37.16 0.23 1.39 16 11 O -0.40 -9.49 9.85 -35.23 -0.35 -9.83 16 12 C 0.20 5.41 5.69 36.01 0.20 5.62 16 13 C -0.52 -15.12 9.43 -34.44 -0.32 -15.45 16 14 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 17 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.08 0.80 3.76 -26.16 -0.10 0.70 16 22 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 23 C -0.17 -1.55 9.30 37.16 0.35 -1.20 16 24 O -0.37 -4.39 10.89 -35.23 -0.38 -4.77 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.93 7.74 -51.93 -0.40 0.53 16 30 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.36 5.71 8.29 -39.29 -0.33 5.39 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -30.72 342.12 -8.33 -39.05 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.83 Total: -0.53 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.02 Total: -36.76 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.73 Total: -14.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.72 -8.33 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686517847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.086 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds