Wall clock time and date at job start Mon Mar 30 2020 04:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.89690 * 2 1 4 4 C 1.54381 * 109.83292 * 239.06148 * 2 1 3 5 5 C 1.55301 * 102.25481 * 261.84654 * 4 2 1 6 6 H 1.08995 * 111.12749 * 83.78531 * 5 4 2 7 7 C 1.53004 * 111.12303 * 207.94589 * 5 4 2 8 8 N 1.46899 * 109.47234 * 286.55433 * 7 5 4 9 9 C 1.46895 * 111.00198 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.47203 * 180.02562 * 9 8 7 11 11 O 1.42905 * 109.46884 * 65.00578 * 10 9 8 12 12 C 1.42899 * 114.00074 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47365 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99870 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00086 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00213 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00151 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46883 * 89.99556 * 17 15 13 19 19 H 1.48495 * 109.47353 * 209.99621 * 17 15 13 20 20 H 1.48504 * 109.46994 * 330.00057 * 17 15 13 21 21 C 1.54945 * 100.94080 * 325.86233 * 5 4 2 22 22 H 1.09001 * 110.30800 * 155.36466 * 21 5 4 23 23 C 1.52998 * 110.31188 * 277.53078 * 21 5 4 24 24 O 1.43240 * 109.83111 * 120.93032 * 2 1 3 25 25 H 1.09005 * 109.47000 * 300.51868 * 1 2 3 26 26 H 1.08993 * 109.47190 * 60.52210 * 1 2 3 27 27 H 1.09006 * 109.46973 * 180.52788 * 1 2 3 28 28 H 1.09006 * 110.84233 * 20.03419 * 4 2 1 29 29 H 1.09000 * 110.84827 * 143.65064 * 4 2 1 30 30 H 1.08997 * 109.47129 * 46.55638 * 7 5 4 31 31 H 1.09001 * 109.47071 * 166.55558 * 7 5 4 32 32 H 1.00906 * 110.99858 * 56.04858 * 8 7 5 33 33 H 1.09004 * 109.47615 * 299.99986 * 9 8 7 34 34 H 1.09003 * 109.47190 * 60.00508 * 9 8 7 35 35 H 1.08997 * 109.46734 * 184.99814 * 10 9 8 36 36 H 1.08998 * 109.47166 * 305.00497 * 10 9 8 37 37 H 1.09004 * 109.46635 * 299.99747 * 12 11 10 38 38 H 1.09002 * 109.46890 * 59.99015 * 12 11 10 39 39 H 0.96996 * 120.00454 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47404 * 177.17050 * 23 21 5 41 41 H 1.09004 * 109.47453 * 297.16900 * 23 21 5 42 42 H 1.09003 * 109.47270 * 57.16664 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0538 -0.7466 -1.2456 5 6 2.3681 -2.1570 -0.6766 6 1 1.4730 -2.7785 -0.6505 7 6 3.4848 -2.8362 -1.4720 8 7 2.9645 -3.2674 -2.7763 9 6 4.0115 -3.9247 -3.5697 10 6 3.4332 -4.3581 -4.9183 11 8 3.0594 -3.2016 -5.6700 12 6 2.5042 -3.4969 -6.9532 13 6 2.1474 -2.2115 -7.6541 14 1 2.3263 -1.2638 -7.1680 15 6 1.5915 -2.2453 -8.9154 16 7 1.3732 -3.3993 -9.5070 17 14 1.1486 -0.6520 -9.7839 18 1 2.3113 -0.1821 -10.5793 19 1 -0.0071 -0.8850 -10.6868 20 1 0.7897 0.3780 -8.7760 21 6 2.8407 -1.7981 0.7547 22 1 2.6919 -2.6442 1.4255 23 6 4.3135 -1.3838 0.7393 24 8 2.0159 -0.6926 1.1558 25 1 -0.3633 0.5219 0.8853 26 1 -0.3633 0.5057 -0.8946 27 1 -0.3633 -1.0277 0.0095 28 1 1.2850 -0.8018 -2.0165 29 1 2.9571 -0.2733 -1.6303 30 1 4.3036 -2.1326 -1.6220 31 1 3.8476 -3.7037 -0.9208 32 1 2.5634 -2.4906 -3.2804 33 1 4.8338 -3.2283 -3.7344 34 1 4.3784 -4.7998 -3.0332 35 1 4.1838 -4.9234 -5.4706 36 1 2.5558 -4.9834 -4.7533 37 1 3.2351 -4.0447 -7.5480 38 1 1.6075 -4.1043 -6.8300 39 1 0.9818 -3.4232 -10.3942 40 1 4.6178 -1.0864 1.7429 41 1 4.9240 -2.2241 0.4086 42 1 4.4481 -0.5456 0.0555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686517848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:30 Heat of formation + Delta-G solvation = -113.510171 kcal Electronic energy + Delta-G solvation = -19511.252767 eV Core-core repulsion = 16490.541579 eV Total energy + Delta-G solvation = -3020.711188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18870 -37.26153 -35.69703 -33.07818 -32.64736 -32.37772 -29.29751 -28.09031 -26.80121 -25.40040 -23.75628 -22.38035 -21.46206 -20.84390 -19.86969 -16.62618 -16.51068 -16.16843 -15.75874 -15.62631 -15.28400 -14.71858 -14.39296 -13.94169 -13.74703 -13.36472 -13.08558 -12.95291 -12.72861 -12.56656 -12.37468 -12.07643 -11.94899 -11.68697 -11.42475 -11.20680 -10.89844 -10.81946 -10.78229 -10.65118 -10.57425 -10.43315 -10.02153 -9.69087 -9.12859 -8.84614 -8.25132 -8.19104 -6.12650 -4.14682 3.28513 3.33713 3.38505 3.64246 4.12448 4.32976 4.41829 4.67850 4.79420 4.91589 4.94936 5.01032 5.12150 5.16598 5.23869 5.31838 5.35809 5.45289 5.47612 5.59917 5.65117 5.66834 5.73723 5.79700 5.88104 5.93009 5.97089 6.05935 6.12027 6.19053 6.19711 6.32779 6.95549 7.09377 7.18142 7.42029 7.60671 7.76797 8.13348 8.55496 8.98217 9.50302 10.98883 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.004012 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.386145 B = 6977.584069 C = 7912.841836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.077 3.923 3 H 0.074 0.926 4 C -0.151 4.151 5 C -0.114 4.114 6 H 0.095 0.905 7 C 0.070 3.930 8 N -0.688 5.688 9 C 0.066 3.934 10 C 0.062 3.938 11 O -0.400 6.400 12 C 0.197 3.803 13 C -0.515 4.515 14 H 0.065 0.935 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.082 3.918 22 H 0.093 0.907 23 C -0.171 4.171 24 O -0.376 6.376 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.355 0.645 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.004 0.996 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 2.589 19.270 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.092 0.908 4 C -0.188 4.188 5 C -0.133 4.133 6 H 0.114 0.886 7 C -0.060 4.060 8 N -0.321 5.321 9 C -0.063 4.063 10 C -0.016 4.016 11 O -0.320 6.320 12 C 0.123 3.877 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.735 3.265 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.024 3.976 22 H 0.111 0.889 23 C -0.228 4.228 24 O -0.296 6.296 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.175 0.825 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.975 2.170 19.604 19.947 hybrid contribution 0.319 1.111 -1.229 1.687 sum 3.293 3.281 18.375 18.954 Atomic orbital electron populations 1.22114 0.94764 1.02750 1.02155 1.22661 0.94470 0.95966 0.84966 0.90824 1.23284 1.02423 0.95021 0.98092 1.22875 0.99913 0.96485 0.94035 0.88635 1.21905 0.94863 0.98197 0.90999 1.60477 1.32762 1.34638 1.04205 1.21947 0.92901 0.98512 0.92975 1.22299 0.98279 0.90080 0.90980 1.87780 1.82628 1.29457 1.32135 1.20177 0.92195 0.97241 0.78096 1.21042 1.40998 0.92792 1.00521 0.91659 1.24942 0.95556 0.96955 0.96994 1.69959 1.44106 1.24515 1.15133 0.86347 0.78016 0.82865 0.79318 1.20492 1.21045 1.19646 1.22922 0.90502 0.89074 0.95103 0.88916 1.22285 0.96022 1.02148 1.02358 1.88444 1.66862 1.43953 1.30326 0.92266 0.91350 0.92019 0.89267 0.90655 0.94874 0.91102 0.82496 0.94821 0.90701 0.94137 0.93535 0.97835 0.97602 0.92630 0.92129 0.91338 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.42 37.16 0.35 -1.22 16 2 C 0.08 0.82 4.15 -26.01 -0.11 0.71 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.15 -1.63 5.17 -24.79 -0.13 -1.76 16 5 C -0.11 -1.22 3.16 -88.37 -0.28 -1.50 16 6 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 7 C 0.07 0.79 3.99 -3.82 -0.02 0.77 16 8 N -0.69 -9.89 6.50 -113.78 -0.74 -10.63 16 9 C 0.07 0.97 6.11 -3.82 -0.02 0.95 16 10 C 0.06 1.14 6.28 37.16 0.23 1.37 16 11 O -0.40 -9.45 9.85 -35.23 -0.35 -9.80 16 12 C 0.20 5.39 5.69 36.00 0.20 5.60 16 13 C -0.52 -15.07 9.43 -34.44 -0.32 -15.39 16 14 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.91 21.70 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.08 0.83 4.03 -25.71 -0.10 0.72 16 22 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 23 C -0.17 -1.53 8.42 37.16 0.31 -1.22 16 24 O -0.38 -4.48 10.70 -35.23 -0.38 -4.85 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.02 7.82 -51.93 -0.41 0.61 16 29 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 30 H 0.03 0.37 6.92 -51.93 -0.36 0.01 16 31 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16 32 H 0.36 5.71 7.83 -39.29 -0.31 5.40 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.55 6.93 -51.93 -0.36 0.19 16 42 H 0.06 0.56 7.41 -51.93 -0.39 0.18 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -30.67 336.94 -8.32 -38.99 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.67 Total: 0.07 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 0.02 Total: -9.44 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.00 Total: -36.73 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.72 Total: -14.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.67 -8.32 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686517848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.521 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds