Wall clock time and date at job start Mon Mar 30 2020 04:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.32956 * 2 1 4 4 C 1.54485 * 110.37398 * 237.75074 * 2 1 3 5 5 C 1.54509 * 104.05911 * 217.18741 * 4 2 1 6 6 H 1.09007 * 110.50543 * 118.78532 * 5 4 2 7 7 C 1.53004 * 110.51044 * 241.35252 * 5 4 2 8 8 N 1.46895 * 109.47035 * 291.69933 * 7 5 4 9 9 C 1.46906 * 110.99789 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 7 11 11 O 1.42905 * 109.46911 * 65.00374 * 10 9 8 12 12 C 1.42901 * 113.99735 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.46841 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00154 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00195 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99650 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00316 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47125 * 59.99437 * 17 15 13 19 19 H 1.48498 * 109.46926 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46824 * 299.99822 * 17 15 13 21 21 C 1.54475 * 104.18694 * 0.06935 * 5 4 2 22 22 H 1.08996 * 110.37291 * 265.07545 * 21 5 4 23 23 C 1.53006 * 110.37257 * 142.73960 * 21 5 4 24 24 O 1.44428 * 110.37423 * 122.36890 * 2 1 3 25 25 H 1.09004 * 109.47211 * 182.24977 * 1 2 3 26 26 H 1.08995 * 109.47784 * 302.24642 * 1 2 3 27 27 H 1.08999 * 109.47225 * 62.25327 * 1 2 3 28 28 H 1.09000 * 110.50822 * 98.54575 * 4 2 1 29 29 H 1.08999 * 110.62794 * 335.89137 * 4 2 1 30 30 H 1.08996 * 109.46863 * 171.69775 * 7 5 4 31 31 H 1.09002 * 109.46661 * 51.69952 * 7 5 4 32 32 H 1.00899 * 111.00672 * 56.04786 * 8 7 5 33 33 H 1.08992 * 109.47459 * 299.99826 * 9 8 7 34 34 H 1.09004 * 109.47040 * 59.99976 * 9 8 7 35 35 H 1.09003 * 109.47073 * 184.99730 * 10 9 8 36 36 H 1.09002 * 109.47495 * 305.00162 * 10 9 8 37 37 H 1.08998 * 109.46730 * 299.99656 * 12 11 10 38 38 H 1.08996 * 109.47304 * 60.00237 * 12 11 10 39 39 H 0.96994 * 119.99473 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46957 * 59.99514 * 23 21 5 41 41 H 1.09001 * 109.47153 * 179.97438 * 23 21 5 42 42 H 1.09006 * 109.46909 * 300.00214 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7728 -1.2248 5 6 3.3178 -1.5049 -0.6874 6 1 3.1966 -2.5844 -0.7781 7 6 4.5715 -1.0431 -1.4331 8 7 4.5143 -1.5117 -2.8241 9 6 5.7043 -1.0854 -3.5726 10 6 5.6090 -1.5916 -5.0133 11 8 4.5055 -0.9619 -5.6674 12 6 4.3272 -1.3668 -7.0262 13 6 3.1420 -0.6451 -7.6140 14 1 2.5808 0.0526 -7.0101 15 6 2.7735 -0.8763 -8.9223 16 7 3.4566 -1.7264 -9.6575 17 14 1.3048 0.0188 -9.6512 18 1 1.5421 1.4838 -9.5988 19 1 1.1195 -0.4020 -11.0631 20 1 0.0857 -0.3134 -8.8710 21 6 3.3890 -1.0911 0.7992 22 1 4.0553 -0.2376 0.9240 23 6 3.8610 -2.2667 1.6573 24 8 2.0328 -0.7249 1.1436 25 1 -0.3634 -1.0269 0.0403 26 1 -0.3634 0.5483 0.8691 27 1 -0.3633 0.4784 -0.9095 28 1 2.3430 -0.0818 -2.0216 29 1 1.3286 -1.4902 -1.5811 30 1 5.4558 -1.4551 -0.9469 31 1 4.6226 0.0456 -1.4182 32 1 3.6701 -1.1961 -3.2777 33 1 5.7630 0.0029 -3.5727 34 1 6.5968 -1.4973 -3.1014 35 1 6.5305 -1.3523 -5.5441 36 1 5.4614 -2.6715 -5.0101 37 1 5.2222 -1.1226 -7.5984 38 1 4.1531 -2.4421 -7.0651 39 1 3.1975 -1.8887 -10.5780 40 1 4.8512 -2.5820 1.3284 41 1 3.9063 -1.9589 2.7019 42 1 3.1621 -3.0966 1.5526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686517850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:33 Heat of formation + Delta-G solvation = -114.988600 kcal Electronic energy + Delta-G solvation = -19389.863911 eV Core-core repulsion = 16369.088614 eV Total energy + Delta-G solvation = -3020.775298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96847 -37.25041 -35.65761 -33.08134 -32.78375 -32.27287 -29.58350 -28.29042 -26.78460 -25.17001 -22.67644 -22.37423 -21.77497 -21.12907 -20.23911 -16.79045 -16.33096 -16.09878 -15.76881 -15.41330 -15.24890 -14.87624 -14.40326 -13.86107 -13.76905 -13.28559 -13.25405 -13.11505 -12.71511 -12.35810 -12.17517 -12.06424 -11.89676 -11.67508 -11.45228 -11.18278 -10.97425 -10.84068 -10.76854 -10.65556 -10.61867 -10.45123 -10.02246 -9.84052 -9.13696 -8.83881 -8.25725 -8.18673 -6.12177 -4.14257 3.30633 3.33617 3.37057 3.66780 4.14504 4.33305 4.47124 4.70510 4.78963 4.86543 4.92156 5.07801 5.13944 5.16640 5.24192 5.29708 5.36578 5.43737 5.47977 5.57315 5.63078 5.67817 5.71283 5.81563 5.88727 5.93971 5.97922 6.05741 6.09191 6.15983 6.18964 6.33094 6.78669 7.09697 7.18171 7.42490 7.61014 7.76957 8.13769 8.55895 8.98292 9.50577 10.99329 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.003988 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.695104 B = 7020.210860 C = 8108.042756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.066 0.934 4 C -0.149 4.149 5 C -0.115 4.115 6 H 0.093 0.907 7 C 0.067 3.933 8 N -0.687 5.687 9 C 0.066 3.934 10 C 0.062 3.938 11 O -0.400 6.400 12 C 0.198 3.802 13 C -0.516 4.516 14 H 0.065 0.935 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.076 3.924 22 H 0.067 0.933 23 C -0.144 4.144 24 O -0.373 6.373 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.355 0.645 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.004 0.996 38 H 0.006 0.994 39 H 0.265 0.735 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 1.306 20.052 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.083 0.917 4 C -0.187 4.187 5 C -0.134 4.134 6 H 0.112 0.888 7 C -0.062 4.062 8 N -0.320 5.320 9 C -0.064 4.064 10 C -0.016 4.016 11 O -0.320 6.320 12 C 0.123 3.877 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.735 3.265 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.018 3.982 22 H 0.084 0.916 23 C -0.202 4.202 24 O -0.292 6.292 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.176 0.824 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.667 0.691 20.282 20.305 hybrid contribution -0.526 1.199 -1.041 1.673 sum 0.141 1.891 19.241 19.334 Atomic orbital electron populations 1.21804 0.93237 1.02957 1.02355 1.22953 0.95274 0.95248 0.85185 0.91653 1.23089 0.97659 0.99912 0.98019 1.22613 0.94756 1.02116 0.93941 0.88840 1.21934 0.97224 0.96977 0.90081 1.60485 1.06145 1.63823 1.01579 1.21953 0.93280 0.98001 0.93135 1.22300 0.90887 0.97001 0.91445 1.87779 1.48030 1.67322 1.28889 1.20168 0.96412 0.95003 0.76082 1.21008 1.12696 1.25150 0.96586 0.91703 1.24948 0.97406 0.95462 0.96633 1.69954 1.40091 1.34886 1.08795 0.86401 0.82320 0.79902 0.77875 1.20057 1.21128 1.19985 1.22991 0.84651 0.97121 0.93426 0.91554 1.21791 1.01432 0.97301 0.99639 1.89145 1.27134 1.74480 1.38474 0.91733 0.92164 0.90947 0.90381 0.90094 0.91123 0.95394 0.82442 0.94825 0.90695 0.94124 0.93522 0.97829 0.97606 0.92574 0.91037 0.92132 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.52 37.16 0.35 -1.05 16 2 C 0.07 0.77 3.93 -25.95 -0.10 0.67 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.15 -1.70 5.78 -25.16 -0.15 -1.85 16 5 C -0.12 -1.28 2.90 -89.05 -0.26 -1.53 16 6 H 0.09 1.10 7.87 -51.93 -0.41 0.69 16 7 C 0.07 0.78 4.86 -3.82 -0.02 0.76 16 8 N -0.69 -10.05 6.50 -113.78 -0.74 -10.79 16 9 C 0.07 0.98 6.11 -3.82 -0.02 0.96 16 10 C 0.06 1.15 6.28 37.16 0.23 1.38 16 11 O -0.40 -9.51 9.85 -35.23 -0.35 -9.85 16 12 C 0.20 5.42 5.69 36.00 0.20 5.63 16 13 C -0.52 -15.14 9.43 -34.44 -0.32 -15.47 16 14 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 17 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 C 0.08 0.79 3.49 -25.95 -0.09 0.70 16 22 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 23 C -0.14 -1.26 9.52 37.16 0.35 -0.91 16 24 O -0.37 -4.55 11.05 -35.23 -0.39 -4.94 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.93 7.11 -51.93 -0.37 0.57 16 29 H 0.08 0.94 7.88 -51.93 -0.41 0.53 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.36 5.80 7.15 -39.29 -0.28 5.52 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -30.88 340.63 -8.30 -39.18 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.76 Total: -0.13 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.00 Total: -36.96 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.74 Total: -14.79 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.88 -8.30 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686517850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.808 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds