Wall clock time and date at job start Mon Mar 30 2020 04:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.32956 * 2 1 4 4 C 1.54485 * 110.37398 * 237.75074 * 2 1 3 5 5 C 1.54509 * 104.05911 * 217.18741 * 4 2 1 6 6 H 1.09007 * 110.50543 * 118.78532 * 5 4 2 7 7 C 1.53004 * 110.51044 * 241.35252 * 5 4 2 8 8 N 1.46895 * 109.47035 * 291.69933 * 7 5 4 9 9 C 1.46906 * 110.99789 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 7 11 11 O 1.42905 * 109.46911 * 65.00374 * 10 9 8 12 12 C 1.42901 * 113.99735 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.46841 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00154 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00195 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99650 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00316 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47125 * 59.99437 * 17 15 13 19 19 H 1.48498 * 109.46926 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46824 * 299.99822 * 17 15 13 21 21 C 1.54475 * 104.18694 * 0.06935 * 5 4 2 22 22 H 1.08996 * 110.37291 * 265.07545 * 21 5 4 23 23 C 1.53006 * 110.37257 * 142.73960 * 21 5 4 24 24 O 1.44428 * 110.37423 * 122.36890 * 2 1 3 25 25 H 1.09004 * 109.47211 * 182.24977 * 1 2 3 26 26 H 1.08995 * 109.47784 * 302.24642 * 1 2 3 27 27 H 1.08999 * 109.47225 * 62.25327 * 1 2 3 28 28 H 1.09000 * 110.50822 * 98.54575 * 4 2 1 29 29 H 1.08999 * 110.62794 * 335.89137 * 4 2 1 30 30 H 1.08996 * 109.46863 * 171.69775 * 7 5 4 31 31 H 1.09002 * 109.46661 * 51.69952 * 7 5 4 32 32 H 1.00899 * 111.00672 * 56.04786 * 8 7 5 33 33 H 1.08992 * 109.47459 * 299.99826 * 9 8 7 34 34 H 1.09004 * 109.47040 * 59.99976 * 9 8 7 35 35 H 1.09003 * 109.47073 * 184.99730 * 10 9 8 36 36 H 1.09002 * 109.47495 * 305.00162 * 10 9 8 37 37 H 1.08998 * 109.46730 * 299.99656 * 12 11 10 38 38 H 1.08996 * 109.47304 * 60.00237 * 12 11 10 39 39 H 0.96994 * 119.99473 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46957 * 59.99514 * 23 21 5 41 41 H 1.09001 * 109.47153 * 179.97438 * 23 21 5 42 42 H 1.09006 * 109.46909 * 300.00214 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7728 -1.2248 5 6 3.3178 -1.5049 -0.6874 6 1 3.1966 -2.5844 -0.7781 7 6 4.5715 -1.0431 -1.4331 8 7 4.5143 -1.5117 -2.8241 9 6 5.7043 -1.0854 -3.5726 10 6 5.6090 -1.5916 -5.0133 11 8 4.5055 -0.9619 -5.6674 12 6 4.3272 -1.3668 -7.0262 13 6 3.1420 -0.6451 -7.6140 14 1 2.5808 0.0526 -7.0101 15 6 2.7735 -0.8763 -8.9223 16 7 3.4566 -1.7264 -9.6575 17 14 1.3048 0.0188 -9.6512 18 1 1.5421 1.4838 -9.5988 19 1 1.1195 -0.4020 -11.0631 20 1 0.0857 -0.3134 -8.8710 21 6 3.3890 -1.0911 0.7992 22 1 4.0553 -0.2376 0.9240 23 6 3.8610 -2.2667 1.6573 24 8 2.0328 -0.7249 1.1436 25 1 -0.3634 -1.0269 0.0403 26 1 -0.3634 0.5483 0.8691 27 1 -0.3633 0.4784 -0.9095 28 1 2.3430 -0.0818 -2.0216 29 1 1.3286 -1.4902 -1.5811 30 1 5.4558 -1.4551 -0.9469 31 1 4.6226 0.0456 -1.4182 32 1 3.6701 -1.1961 -3.2777 33 1 5.7630 0.0029 -3.5727 34 1 6.5968 -1.4973 -3.1014 35 1 6.5305 -1.3523 -5.5441 36 1 5.4614 -2.6715 -5.0101 37 1 5.2222 -1.1226 -7.5984 38 1 4.1531 -2.4421 -7.0651 39 1 3.1975 -1.8887 -10.5780 40 1 4.8512 -2.5820 1.3284 41 1 3.9063 -1.9589 2.7019 42 1 3.1621 -3.0966 1.5526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686517850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:32 Heat of formation + Delta-G solvation = -135.995204 kcal Electronic energy + Delta-G solvation = -19390.774826 eV Core-core repulsion = 16369.088614 eV Total energy + Delta-G solvation = -3021.686212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84600 -38.88293 -36.97210 -34.94542 -33.83105 -33.40365 -30.71981 -29.59682 -28.55389 -26.19904 -24.53359 -23.57197 -22.87830 -22.21071 -21.13522 -18.66256 -17.75186 -17.37102 -16.97004 -16.77353 -16.43601 -16.27931 -15.93155 -15.24546 -15.18786 -14.42634 -14.29753 -14.08252 -13.92212 -13.44268 -13.32592 -13.17986 -13.07709 -12.85532 -12.78104 -12.67786 -12.54186 -12.39376 -12.14730 -12.00579 -11.54249 -11.50761 -11.49789 -11.29793 -10.87262 -10.70540 -10.24221 -9.38796 -8.32523 -6.45246 1.39882 1.44497 1.52934 2.34158 2.85129 3.01470 3.09237 3.21459 3.60210 3.82598 3.88005 4.01087 4.17183 4.24060 4.33596 4.35317 4.38993 4.47573 4.53918 4.55632 4.65765 4.73256 4.79074 4.81195 4.84038 4.87388 4.94806 5.01835 5.10214 5.14091 5.17540 5.22365 5.25298 5.33087 5.53799 5.94600 5.95150 6.08424 6.36466 6.52271 6.80417 7.26739 8.79704 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.003988 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.695104 B = 7020.210860 C = 8108.042756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.072 0.928 4 C -0.150 4.150 5 C -0.110 4.110 6 H 0.085 0.915 7 C 0.072 3.928 8 N -0.697 5.697 9 C 0.075 3.925 10 C 0.053 3.947 11 O -0.409 6.409 12 C 0.211 3.789 13 C -0.549 4.549 14 H 0.063 0.937 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.265 1.265 21 C 0.075 3.925 22 H 0.076 0.924 23 C -0.142 4.142 24 O -0.390 6.390 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.343 0.657 33 H 0.033 0.967 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.043 0.957 37 H -0.015 1.015 38 H -0.016 1.016 39 H 0.271 0.729 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 2.097 20.900 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 H 0.090 0.910 4 C -0.188 4.188 5 C -0.129 4.129 6 H 0.103 0.897 7 C -0.057 4.057 8 N -0.329 5.329 9 C -0.054 4.054 10 C -0.024 4.024 11 O -0.329 6.329 12 C 0.136 3.864 13 C -0.587 4.587 14 H 0.081 0.919 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.805 3.195 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.189 1.189 21 C 0.018 3.982 22 H 0.094 0.906 23 C -0.199 4.199 24 O -0.310 6.310 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.161 0.839 33 H 0.052 0.948 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.450 1.476 21.162 21.218 hybrid contribution -0.376 0.908 -1.254 1.593 sum 0.074 2.384 19.908 20.050 Atomic orbital electron populations 1.21809 0.92464 1.02863 1.03081 1.23032 0.96009 0.95272 0.84497 0.91038 1.23068 0.97839 0.99728 0.98144 1.22549 0.94340 1.01454 0.94595 0.89703 1.21974 0.98137 0.97237 0.88373 1.60528 1.05375 1.64173 1.02854 1.21923 0.94659 0.98025 0.90805 1.22627 0.89556 0.96774 0.93482 1.87744 1.50260 1.67832 1.27065 1.19785 0.95258 0.93461 0.77848 1.21363 1.13735 1.25992 0.97567 0.91859 1.25970 1.00511 0.95983 0.96746 1.70067 1.41738 1.35902 1.09335 0.85239 0.78193 0.78793 0.77229 1.18967 1.20070 1.18929 1.23107 0.84169 0.98054 0.92911 0.90602 1.21804 1.01928 0.96395 0.99806 1.89133 1.28102 1.74724 1.39022 0.92234 0.91458 0.90201 0.91161 0.90884 0.89353 0.95036 0.83903 0.94826 0.87518 0.93286 0.93916 0.99738 0.99810 0.92036 0.89585 0.91467 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.52 71.98 0.69 -1.98 16 2 C 0.07 1.45 3.93 31.10 0.12 1.57 16 3 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.15 -3.38 5.78 31.61 0.18 -3.19 16 5 C -0.11 -2.32 2.90 -9.78 -0.03 -2.35 16 6 H 0.08 1.94 7.87 -2.38 -0.02 1.92 16 7 C 0.07 1.54 4.86 86.31 0.42 1.96 16 8 N -0.70 -19.66 6.50 -513.88 -3.34 -23.00 16 9 C 0.07 2.12 6.11 86.30 0.53 2.65 16 10 C 0.05 1.95 6.28 71.98 0.45 2.40 16 11 O -0.41 -19.74 9.85 -148.98 -1.47 -21.20 16 12 C 0.21 11.95 5.69 71.23 0.41 12.36 16 13 C -0.55 -32.65 9.43 25.60 0.24 -32.41 16 14 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 15 C 0.01 0.37 5.46 84.66 0.46 0.83 16 16 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 17 Si 0.98 44.15 29.54 68.60 2.03 46.18 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 21 C 0.08 1.44 3.49 31.10 0.11 1.55 16 22 H 0.08 1.31 7.87 -2.39 -0.02 1.29 16 23 C -0.14 -2.23 9.52 71.98 0.69 -1.55 16 24 O -0.39 -9.08 11.05 -148.98 -1.65 -10.72 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.68 7.11 -2.39 -0.02 1.66 16 29 H 0.07 1.73 7.88 -2.39 -0.02 1.71 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.34 11.16 7.15 -89.69 -0.64 10.51 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -65.84 340.63 0.44 -65.40 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.32 Total: 17.43 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 4.26 Total: -18.16 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -3.06 Total: -78.92 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -3.11 Total: -31.93 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -65.84 0.44 -65.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686517850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.596 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds