Wall clock time and date at job start Mon Mar 30 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.46976 * 2 1 4 4 C 1.46900 * 110.99802 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.54333 * 34.82854 * 4 3 2 6 6 C 1.53173 * 109.54384 * 274.55768 * 4 3 2 7 7 C 1.53098 * 109.16248 * 183.15381 * 6 4 3 8 8 O 1.42905 * 109.41397 * 57.61026 * 7 6 4 9 9 C 1.43038 * 114.13112 * 298.83602 * 8 7 6 10 10 C 1.53097 * 109.34400 * 61.12243 * 9 8 7 11 11 H 1.08999 * 109.52766 * 182.48289 * 10 9 8 12 12 O 1.42905 * 109.51877 * 62.35710 * 10 9 8 13 13 C 1.42899 * 113.99778 * 90.12992 * 12 10 9 14 14 C 1.52999 * 109.46889 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47128 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47403 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00089 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00281 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00144 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99918 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47174 * 89.99914 * 20 18 16 22 22 H 1.48500 * 109.47028 * 210.00294 * 20 18 16 23 23 H 1.48508 * 109.47177 * 329.99897 * 20 18 16 24 24 H 1.08997 * 109.47222 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47255 * 299.99758 * 1 2 3 26 26 H 1.09002 * 109.47094 * 59.99829 * 1 2 3 27 27 H 1.08997 * 109.46682 * 240.00389 * 2 1 3 28 28 H 1.09002 * 109.47094 * 120.00170 * 2 1 3 29 29 H 1.00902 * 111.00034 * 303.95692 * 3 2 1 30 30 H 1.09007 * 109.52246 * 303.05579 * 6 4 3 31 31 H 1.08991 * 109.52474 * 63.18270 * 6 4 3 32 32 H 1.08999 * 109.47821 * 177.58791 * 7 6 4 33 33 H 1.08999 * 109.47887 * 297.62490 * 7 6 4 34 34 H 1.09005 * 109.47214 * 301.19639 * 9 8 7 35 35 H 1.09004 * 109.56913 * 181.11372 * 9 8 7 36 36 H 1.08997 * 109.47171 * 299.99768 * 13 12 10 37 37 H 1.08997 * 109.47442 * 59.99964 * 13 12 10 38 38 H 1.08997 * 109.47286 * 300.00017 * 14 13 12 39 39 H 1.09008 * 109.47201 * 60.00236 * 14 13 12 40 40 H 1.09005 * 109.47059 * 299.99976 * 15 14 13 41 41 H 1.08999 * 109.46874 * 59.99868 * 15 14 13 42 42 H 0.96993 * 120.00083 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8754 0.5909 -0.5858 6 6 4.0028 1.3234 1.4398 7 6 5.5290 1.4442 1.4373 8 8 5.9066 2.6809 0.8290 9 6 5.4933 2.8124 -0.5341 10 6 3.9657 2.7456 -0.6095 11 1 3.6495 2.8012 -1.6512 12 8 3.4034 3.8388 0.1192 13 6 3.1935 5.0140 -0.6662 14 6 2.5910 6.1129 0.2115 15 6 2.3668 7.3715 -0.6292 16 6 1.7740 8.4541 0.2354 17 1 1.5773 8.2638 1.2801 18 6 1.4828 9.6877 -0.3073 19 7 0.9650 10.6323 0.4471 20 14 1.8236 10.0172 -2.1141 21 1 0.6273 9.6581 -2.9171 22 1 2.1340 11.4568 -2.3048 23 1 2.9809 9.1986 -2.5569 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6441 1.9013 -0.7813 30 1 3.5747 2.1286 2.0370 31 1 3.7133 0.3619 1.8637 32 1 5.8975 1.4161 2.4627 33 1 5.9583 0.6158 0.8737 34 1 5.9221 2.0018 -1.1236 35 1 5.8353 3.7692 -0.9286 36 1 4.1458 5.3544 -1.0726 37 1 2.5097 4.7871 -1.4841 38 1 1.6386 5.7724 0.6176 39 1 3.2746 6.3401 1.0297 40 1 3.3195 7.7119 -1.0350 41 1 1.6835 7.1447 -1.4476 42 1 0.7605 11.5002 0.0654 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686578372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:01 Heat of formation + Delta-G solvation = -106.687007 kcal Electronic energy + Delta-G solvation = -19868.662073 eV Core-core repulsion = 16848.246760 eV Total energy + Delta-G solvation = -3020.415314 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.97363 -37.05519 -36.51164 -33.90354 -32.52402 -31.64445 -30.42827 -28.83226 -27.00188 -24.14756 -23.67362 -22.63964 -21.95833 -20.30417 -19.83781 -16.89874 -16.62296 -16.42894 -16.28689 -15.70913 -15.42383 -14.75932 -14.58643 -14.34505 -14.08535 -13.59394 -13.24652 -13.19316 -12.63368 -12.48440 -12.12367 -12.04586 -11.81441 -11.68465 -11.53405 -11.23490 -10.95575 -10.83145 -10.66260 -10.46512 -10.09655 -9.92515 -9.67254 -9.62594 -9.15026 -8.98225 -8.55113 -8.50542 -6.00453 -3.98267 3.32227 3.39418 3.42719 3.65510 3.79571 4.07995 4.47763 4.49088 4.71098 4.76858 4.89656 4.99013 5.04992 5.11400 5.21659 5.29364 5.30206 5.33009 5.37385 5.52167 5.61446 5.64487 5.71166 5.72573 5.80128 5.90910 6.01230 6.11213 6.31170 6.56867 6.59906 6.88730 6.93659 7.09215 7.22686 7.33728 7.46288 7.58542 7.83527 8.59055 9.05686 9.61595 11.13187 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021845 B = 0.004375 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.468666 B = 6397.782812 C = 7084.534032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.674 5.674 4 C 0.093 3.907 5 H 0.050 0.950 6 C -0.140 4.140 7 C 0.061 3.939 8 O -0.368 6.368 9 C 0.043 3.957 10 C 0.052 3.948 11 H 0.063 0.937 12 O -0.352 6.352 13 C 0.059 3.941 14 C -0.097 4.097 15 C -0.011 4.011 16 C -0.518 4.518 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.344 0.656 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 -23.805 -3.888 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.306 5.306 4 C -0.017 4.017 5 H 0.067 0.933 6 C -0.178 4.178 7 C -0.016 4.016 8 O -0.286 6.286 9 C -0.035 4.035 10 C -0.007 4.007 11 H 0.081 0.919 12 O -0.271 6.271 13 C -0.017 4.017 14 C -0.135 4.135 15 C -0.048 4.048 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.163 0.837 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.279 -23.414 -2.916 24.416 hybrid contribution 0.163 -0.157 -2.375 2.385 sum 6.441 -23.571 -5.291 25.001 Atomic orbital electron populations 1.21764 0.94793 1.01491 1.02817 1.21983 0.95925 0.89590 1.00004 1.60347 1.06645 1.12945 1.50693 1.21614 0.88444 0.94576 0.97019 0.93271 1.22139 0.95529 1.03299 0.96823 1.22600 0.94213 0.86227 0.98601 1.88023 1.77607 1.37694 1.25248 1.23098 0.93842 1.02421 0.84142 1.22840 0.93798 0.88587 0.95518 0.91923 1.88097 1.82378 1.20719 1.35878 1.22843 0.98486 0.85771 0.94610 1.21409 1.00444 0.93136 0.98513 1.19518 0.96397 0.93069 0.95812 1.21124 1.40995 0.95586 0.97878 0.90869 1.25028 0.94647 0.96086 0.97760 1.69916 1.44072 1.04349 1.35969 0.86775 0.79165 0.77319 0.85983 1.20331 1.21377 1.19098 0.92382 0.91498 0.92781 0.95855 0.91150 0.83721 0.88962 0.91533 0.88694 0.93905 0.92861 0.88352 0.94210 0.94198 0.91923 0.91946 0.96652 0.97114 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.17 37.16 0.38 -0.90 16 2 C 0.05 0.49 6.21 -3.82 -0.02 0.46 16 3 N -0.67 -7.61 6.13 -106.53 -0.65 -8.26 16 4 C 0.09 1.02 2.36 -67.53 -0.16 0.86 16 5 H 0.05 0.46 7.80 -51.93 -0.41 0.06 16 6 C -0.14 -1.56 5.47 -26.59 -0.15 -1.70 16 7 C 0.06 0.64 6.84 37.21 0.25 0.89 16 8 O -0.37 -5.02 10.70 -42.72 -0.46 -5.47 16 9 C 0.04 0.50 6.50 37.21 0.24 0.74 16 10 C 0.05 0.64 2.29 -26.59 -0.06 0.58 16 11 H 0.06 0.68 7.79 -51.93 -0.40 0.28 16 12 O -0.35 -5.73 9.21 -42.72 -0.39 -6.13 16 13 C 0.06 1.01 5.75 37.16 0.21 1.22 16 14 C -0.10 -2.06 5.52 -26.73 -0.15 -2.20 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 16 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 17 H 0.07 2.32 7.99 -52.48 -0.42 1.90 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 20 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.19 8.06 -51.93 -0.42 -0.23 16 28 H 0.07 0.62 7.54 -51.93 -0.39 0.23 16 29 H 0.34 3.90 8.37 -39.29 -0.33 3.57 16 30 H 0.09 1.31 7.83 -51.92 -0.41 0.91 16 31 H 0.07 0.63 7.57 -51.93 -0.39 0.24 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 1.16 7.84 -51.93 -0.41 0.75 16 36 H 0.04 0.65 7.84 -51.93 -0.41 0.24 16 37 H 0.04 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 40 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 41 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 333.45 15.07 5.02 5.02 Total: -1.00 -32.27 333.45 -8.08 -40.35 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.72 Total: -1.10 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 0.01 Total: -14.09 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.12 Total: -35.89 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.85 Total: -11.60 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.27 -8.08 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.332 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds