Wall clock time and date at job start Mon Mar 30 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47006 * 2 1 4 4 C 1.46903 * 110.99673 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.54071 * 325.17395 * 4 3 2 6 6 C 1.53177 * 109.54691 * 85.44422 * 4 3 2 7 7 C 1.53085 * 109.16181 * 176.84674 * 6 4 3 8 8 O 1.42908 * 109.41706 * 302.38798 * 7 6 4 9 9 C 1.42901 * 114.09650 * 61.16180 * 8 7 6 10 10 C 1.53094 * 109.41315 * 298.84511 * 9 8 7 11 11 H 1.09003 * 109.57340 * 177.54865 * 10 9 8 12 12 O 1.42905 * 109.51900 * 297.70061 * 10 9 8 13 13 C 1.42901 * 114.00029 * 269.68695 * 12 10 9 14 14 C 1.53005 * 109.46748 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46736 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47135 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99441 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00142 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99820 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99928 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46938 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.46980 * 119.99892 * 20 18 16 23 23 H 1.48504 * 109.46619 * 239.99519 * 20 18 16 24 24 H 1.09001 * 109.47002 * 299.99782 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00219 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46801 * 120.00064 * 2 1 3 28 28 H 1.09001 * 109.46998 * 239.99660 * 2 1 3 29 29 H 1.00894 * 110.99951 * 56.04708 * 3 2 1 30 30 H 1.09003 * 109.52092 * 296.75138 * 6 4 3 31 31 H 1.09003 * 109.52205 * 56.93649 * 6 4 3 32 32 H 1.09003 * 109.47996 * 182.40537 * 7 6 4 33 33 H 1.08998 * 109.48456 * 62.37348 * 7 6 4 34 34 H 1.09000 * 109.48210 * 178.86408 * 9 8 7 35 35 H 1.08997 * 109.49021 * 58.82744 * 9 8 7 36 36 H 1.08999 * 109.47121 * 299.99818 * 13 12 10 37 37 H 1.08995 * 109.47219 * 60.00340 * 13 12 10 38 38 H 1.08999 * 109.46787 * 299.99564 * 14 13 12 39 39 H 1.08995 * 109.47358 * 59.99966 * 14 13 12 40 40 H 1.08992 * 109.47122 * 299.99767 * 15 14 13 41 41 H 1.09004 * 109.47005 * 59.99946 * 15 14 13 42 42 H 0.97004 * 120.00091 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8753 0.5908 0.5857 6 6 4.0030 1.3234 -1.4398 7 6 5.5290 1.4441 -1.4372 8 8 5.9067 2.6808 -0.8288 9 6 5.4934 2.8114 0.5329 10 6 3.9658 2.7455 0.6095 11 1 3.6497 2.8011 1.6512 12 8 3.4035 3.8387 -0.1192 13 6 3.1909 5.0131 0.6668 14 6 2.5888 6.1121 -0.2110 15 6 2.3617 7.3697 0.6304 16 6 1.7692 8.4524 -0.2343 17 1 1.5745 8.2626 -1.2795 18 6 1.4767 9.6855 0.3087 19 7 1.7143 9.9166 1.5814 20 14 0.7415 11.0273 -0.7630 21 1 0.5722 10.5178 -2.1475 22 1 -0.5801 11.4281 -0.2174 23 1 1.6488 12.2030 -0.7760 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.6442 1.9012 0.7813 30 1 3.7144 0.3613 -1.8633 31 1 3.5748 2.1285 -2.0370 32 1 5.8976 1.4159 -2.4626 33 1 5.9583 0.6158 -0.8736 34 1 5.8361 3.7683 0.9267 35 1 5.9221 2.0010 1.1224 36 1 2.5060 4.7846 1.4834 37 1 4.1422 5.3541 1.0751 38 1 3.2734 6.3406 -1.0278 39 1 1.6374 5.7708 -0.6190 40 1 1.6774 7.1415 1.4474 41 1 3.3134 7.7108 1.0381 42 1 1.5081 10.7841 1.9635 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686578374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:04 Heat of formation + Delta-G solvation = -110.745243 kcal Electronic energy + Delta-G solvation = -19817.672590 eV Core-core repulsion = 16797.081298 eV Total energy + Delta-G solvation = -3020.591292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92286 -36.97623 -36.46067 -33.82499 -32.49965 -31.48656 -30.30633 -28.76734 -26.54607 -24.10432 -23.63823 -22.83028 -21.92275 -20.27935 -19.85818 -16.70782 -16.57867 -16.30926 -16.03313 -15.63432 -15.36617 -14.72195 -14.47442 -14.35585 -14.25170 -13.53499 -13.25334 -13.07577 -12.47224 -12.15983 -12.04294 -11.93233 -11.72847 -11.59006 -11.41157 -11.19561 -10.91253 -10.68449 -10.58720 -10.46239 -10.28523 -10.01051 -9.62044 -9.38176 -9.04128 -8.89823 -8.51023 -8.31845 -5.97160 -3.98727 3.34574 3.41708 3.47129 3.72337 3.84874 4.14112 4.49764 4.55950 4.75980 4.82946 4.92905 5.03285 5.08506 5.17091 5.25263 5.33464 5.36205 5.39145 5.41949 5.59373 5.64505 5.70303 5.81391 5.81777 5.83676 5.98422 6.03857 6.27030 6.34987 6.77118 6.77430 6.94493 7.14990 7.17064 7.27102 7.65735 7.72970 7.84102 8.03155 8.46853 9.08308 9.65266 11.14535 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.004127 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.750534 B = 6783.731078 C = 7504.999164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.674 5.674 4 C 0.093 3.907 5 H 0.049 0.951 6 C -0.139 4.139 7 C 0.061 3.939 8 O -0.368 6.368 9 C 0.043 3.957 10 C 0.052 3.948 11 H 0.063 0.937 12 O -0.354 6.354 13 C 0.061 3.939 14 C -0.105 4.105 15 C 0.023 3.977 16 C -0.516 4.516 17 H 0.057 0.943 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.344 0.656 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.484 -21.872 -0.872 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.306 5.306 4 C -0.017 4.017 5 H 0.067 0.933 6 C -0.177 4.177 7 C -0.017 4.017 8 O -0.286 6.286 9 C -0.035 4.035 10 C -0.007 4.007 11 H 0.081 0.919 12 O -0.273 6.273 13 C -0.015 4.015 14 C -0.142 4.142 15 C -0.014 4.014 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.458 -21.534 -1.716 22.058 hybrid contribution -0.331 0.332 0.992 1.097 sum 4.126 -21.203 -0.724 21.613 Atomic orbital electron populations 1.21763 0.94828 1.01455 1.02807 1.21982 0.95898 0.89651 0.99983 1.60346 1.06682 1.12880 1.50732 1.21617 0.88423 0.94678 0.96966 0.93301 1.22134 0.95536 1.03197 0.96876 1.22595 0.94217 0.86286 0.98561 1.88001 1.77586 1.37644 1.25329 1.23078 0.93910 1.02452 0.84058 1.22825 0.93753 0.88576 0.95571 0.91887 1.88086 1.82363 1.20875 1.35985 1.22834 0.98528 0.85519 0.94593 1.21604 0.99739 0.94158 0.98728 1.19052 0.96930 0.90387 0.94997 1.21275 1.41059 0.96897 0.96227 0.92463 1.25021 0.95872 0.98618 0.95006 1.69978 1.48759 1.23082 1.11912 0.86521 0.78786 0.81847 0.80788 1.19652 1.21043 1.21030 0.92756 0.91541 0.92410 0.95848 0.91195 0.83662 0.91600 0.89011 0.88768 0.93918 0.88300 0.92906 0.94179 0.94197 0.92591 0.92539 0.96606 0.96585 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.17 37.16 0.38 -0.94 16 2 C 0.05 0.50 6.21 -3.82 -0.02 0.48 16 3 N -0.67 -7.89 6.13 -106.53 -0.65 -8.54 16 4 C 0.09 1.06 2.36 -67.53 -0.16 0.90 16 5 H 0.05 0.48 7.80 -51.93 -0.41 0.08 16 6 C -0.14 -1.60 5.47 -26.60 -0.15 -1.74 16 7 C 0.06 0.66 6.84 37.20 0.25 0.91 16 8 O -0.37 -5.17 10.70 -42.73 -0.46 -5.63 16 9 C 0.04 0.53 6.49 37.21 0.24 0.77 16 10 C 0.05 0.68 2.30 -26.59 -0.06 0.62 16 11 H 0.06 0.74 7.79 -51.93 -0.40 0.33 16 12 O -0.35 -6.02 9.21 -42.73 -0.39 -6.41 16 13 C 0.06 1.12 5.75 37.16 0.21 1.33 16 14 C -0.10 -2.31 5.52 -26.73 -0.15 -2.46 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.20 8.06 -51.93 -0.42 -0.22 16 28 H 0.07 0.64 7.54 -51.93 -0.39 0.24 16 29 H 0.34 4.09 8.36 -39.29 -0.33 3.76 16 30 H 0.07 0.65 7.58 -51.93 -0.39 0.25 16 31 H 0.09 1.33 7.83 -51.93 -0.41 0.93 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 1.24 7.86 -51.93 -0.41 0.83 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 37 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -31.72 337.07 -8.46 -40.18 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.75 Total: -1.67 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 0.00 Total: -13.47 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.08 Total: -35.13 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.85 Total: -12.04 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.72 -8.46 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.566 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds