Wall clock time and date at job start Mon Mar 30 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47021 * 2 1 4 4 C 1.46902 * 111.00528 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.61227 * 34.77227 * 4 3 2 6 6 C 1.53182 * 109.54241 * 274.55745 * 4 3 2 7 7 C 1.53091 * 109.16116 * 183.14796 * 6 4 3 8 8 O 1.42900 * 109.41303 * 57.60774 * 7 6 4 9 9 C 1.42902 * 114.10009 * 298.83867 * 8 7 6 10 10 C 1.53094 * 109.41091 * 61.15957 * 9 8 7 11 11 H 1.09002 * 109.52233 * 62.36694 * 10 9 8 12 12 O 1.42910 * 109.51829 * 182.48560 * 10 9 8 13 13 C 1.42903 * 113.99856 * 269.99738 * 12 10 9 14 14 H 1.09001 * 109.47069 * 30.00829 * 13 12 10 15 15 C 1.52995 * 109.47256 * 270.00066 * 13 12 10 16 16 C 1.53004 * 109.46729 * 150.00126 * 13 12 10 17 17 C 1.50700 * 109.47208 * 295.00066 * 16 13 12 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 300.00001 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00094 * 21 19 17 25 25 H 1.08999 * 109.47502 * 299.99693 * 1 2 3 26 26 H 1.08995 * 109.47163 * 60.00216 * 1 2 3 27 27 H 1.09003 * 109.46582 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47502 * 240.00307 * 2 1 3 29 29 H 1.09004 * 109.47334 * 119.99661 * 2 1 3 30 30 H 1.00905 * 110.99784 * 303.95620 * 3 2 1 31 31 H 1.09002 * 109.52001 * 63.23905 * 6 4 3 32 32 H 1.09002 * 109.51741 * 303.05717 * 6 4 3 33 33 H 1.08998 * 109.48051 * 297.62728 * 7 6 4 34 34 H 1.08995 * 109.48773 * 177.59413 * 7 6 4 35 35 H 1.08995 * 109.48275 * 301.17904 * 9 8 7 36 36 H 1.08997 * 109.48019 * 181.14213 * 9 8 7 37 37 H 1.09000 * 109.47246 * 300.00108 * 15 13 12 38 38 H 1.09004 * 109.46998 * 60.00621 * 15 13 12 39 39 H 1.09001 * 109.46934 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.47074 * 175.00375 * 16 13 12 41 41 H 1.08998 * 109.47285 * 55.00210 * 16 13 12 42 42 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4243 0.0006 5 1 3.8767 0.5909 -0.5847 6 6 4.0028 1.3236 1.4399 7 6 5.5290 1.4445 1.4374 8 8 5.9065 2.6811 0.8289 9 6 5.4932 2.8116 -0.5328 10 6 3.9656 2.7457 -0.6094 11 1 3.5367 3.5802 -0.0547 12 8 3.5525 2.8178 -1.9756 13 6 3.3239 4.1483 -2.4442 14 1 3.9754 4.8390 -1.9088 15 6 1.8631 4.5314 -2.1992 16 6 3.6257 4.2202 -3.9424 17 6 5.0927 3.9631 -4.1723 18 1 5.7445 3.7675 -3.3337 19 6 5.6027 3.9775 -5.4532 20 7 4.8090 4.2161 -6.4743 21 14 7.4210 3.6580 -5.7382 22 1 7.7138 3.7279 -7.1923 23 1 8.2218 4.6829 -5.0217 24 1 7.7725 2.3087 -5.2273 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6441 1.9013 -0.7814 31 1 3.7142 0.3616 1.8634 32 1 3.5746 2.1287 2.0370 33 1 5.9583 0.6161 0.8738 34 1 5.8976 1.4163 2.4627 35 1 5.9220 2.0012 -1.1221 36 1 5.8360 3.7684 -0.9266 37 1 1.2116 3.8407 -2.7346 38 1 1.6482 4.4802 -1.1318 39 1 1.6889 5.5465 -2.5562 40 1 3.3672 5.2102 -4.3180 41 1 3.0381 3.4674 -4.4679 42 1 3.8647 4.3817 -6.3263 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686580946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:12 Heat of formation + Delta-G solvation = -115.992645 kcal Electronic energy + Delta-G solvation = -20661.580394 eV Core-core repulsion = 17640.761558 eV Total energy + Delta-G solvation = -3020.818836 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.74486 -37.33534 -36.28738 -33.61856 -32.40391 -31.36873 -29.74984 -28.47625 -27.05860 -23.88663 -23.51715 -22.83751 -21.78347 -20.43810 -20.01285 -16.95250 -16.71116 -16.20439 -15.98753 -15.37110 -15.10489 -14.45283 -14.17114 -13.82421 -13.67922 -13.53431 -13.23783 -12.93764 -12.52718 -12.13249 -12.01208 -11.88700 -11.62937 -11.53671 -11.45657 -11.17572 -11.05531 -10.89713 -10.75873 -10.52940 -10.13556 -10.09597 -9.78833 -9.50662 -8.89533 -8.44060 -8.40810 -8.30953 -6.32507 -4.00155 3.45449 3.47458 3.65681 3.80296 4.09080 4.33990 4.56984 4.75462 4.99871 5.07308 5.11219 5.21146 5.24561 5.33507 5.41058 5.45566 5.55287 5.60136 5.65382 5.70040 5.79940 5.82145 5.86317 5.92704 5.93523 6.03239 6.07261 6.17014 6.26117 6.29963 6.58609 6.74214 7.05533 7.15257 7.30657 7.36387 7.44516 7.97305 8.23259 8.48904 8.91038 9.69768 11.08069 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.006391 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.808635 B = 4380.098044 C = 5193.051428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 N -0.684 5.684 4 C 0.090 3.910 5 H 0.052 0.948 6 C -0.139 4.139 7 C 0.058 3.942 8 O -0.381 6.381 9 C 0.043 3.957 10 C 0.057 3.943 11 H 0.068 0.932 12 O -0.359 6.359 13 C 0.098 3.902 14 H 0.050 0.950 15 C -0.174 4.174 16 C 0.011 3.989 17 C -0.588 4.588 18 H 0.049 0.951 19 C 0.013 3.987 20 N -0.916 5.916 21 Si 1.066 2.934 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.289 1.289 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.351 0.649 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.020 0.980 41 H 0.015 0.985 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 -6.415 15.340 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.317 5.317 4 C -0.020 4.020 5 H 0.070 0.930 6 C -0.178 4.178 7 C -0.020 4.020 8 O -0.300 6.300 9 C -0.034 4.034 10 C -0.002 4.002 11 H 0.086 0.914 12 O -0.277 6.277 13 C 0.041 3.959 14 H 0.068 0.932 15 C -0.232 4.232 16 C -0.026 4.026 17 C -0.626 4.626 18 H 0.067 0.933 19 C -0.190 4.190 20 N -0.553 5.553 21 Si 0.894 3.106 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.215 1.215 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.171 0.829 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.307 -6.482 14.801 16.493 hybrid contribution -1.184 -0.191 0.269 1.229 sum -4.491 -6.672 15.070 17.082 Atomic orbital electron populations 1.21754 0.95108 1.01458 1.02377 1.21939 0.95543 0.89903 1.00225 1.60591 1.07021 1.13461 1.50645 1.21607 0.88347 0.96863 0.95224 0.92975 1.22228 0.95861 1.03079 0.96613 1.22606 0.93872 0.87040 0.98473 1.87930 1.78197 1.37522 1.26303 1.23150 0.94215 1.03834 0.82212 1.22734 0.94723 0.97406 0.85348 0.91381 1.88009 1.87207 1.28813 1.23716 1.22285 0.92949 0.82243 0.98404 0.93210 1.22375 0.98667 1.01548 1.00599 1.19355 0.98132 0.96492 0.88615 1.21925 0.93307 1.52342 0.95043 0.93285 1.25781 1.06347 0.94403 0.92436 1.70792 1.06625 1.45123 1.32714 0.83589 0.74493 0.76415 0.76085 1.20825 1.21447 1.21530 0.92013 0.92717 0.92396 0.95198 0.91444 0.82879 0.90942 0.90326 0.93280 0.88831 0.92081 0.87919 0.92476 0.93451 0.92103 0.96153 0.96660 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.17 37.16 0.38 -1.13 16 2 C 0.05 0.62 6.21 -3.82 -0.02 0.60 16 3 N -0.68 -9.34 6.31 -106.53 -0.67 -10.02 16 4 C 0.09 1.29 2.28 -67.53 -0.15 1.14 16 5 H 0.05 0.81 7.81 -51.93 -0.41 0.41 16 6 C -0.14 -1.68 5.63 -26.59 -0.15 -1.83 16 7 C 0.06 0.70 6.84 37.20 0.25 0.95 16 8 O -0.38 -5.95 10.76 -35.23 -0.38 -6.33 16 9 C 0.04 0.74 6.46 37.21 0.24 0.98 16 10 C 0.06 0.96 2.10 -26.60 -0.06 0.90 16 11 H 0.07 1.13 7.63 -51.93 -0.40 0.74 16 12 O -0.36 -7.21 8.69 -35.23 -0.31 -7.52 16 13 C 0.10 2.03 2.46 -26.73 -0.07 1.96 16 14 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 15 C -0.17 -2.96 9.52 37.15 0.35 -2.61 16 16 C 0.01 0.28 4.00 -27.88 -0.11 0.17 16 17 C -0.59 -16.59 8.88 -34.44 -0.31 -16.89 16 18 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 19 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 20 N -0.92 -28.19 13.65 55.43 0.76 -27.43 16 21 Si 1.07 25.63 29.90 -169.99 -5.08 20.54 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.03 0.38 8.06 -51.93 -0.42 -0.04 16 29 H 0.07 0.72 7.54 -51.93 -0.39 0.33 16 30 H 0.35 5.25 7.78 -39.29 -0.31 4.95 16 31 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.87 7.99 -51.93 -0.42 1.46 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.71 7.97 -51.93 -0.41 0.30 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.53 8.01 -51.93 -0.42 0.12 16 41 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 42 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -30.52 334.91 -8.04 -38.56 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.67 Total: 2.60 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 0.26 Total: -15.46 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.08 Total: -37.45 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.69 Total: -13.85 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.52 -8.04 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686580946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.428 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds