Wall clock time and date at job start Mon Mar 30 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47021 * 2 1 4 4 C 1.46902 * 111.00528 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.61227 * 34.77227 * 4 3 2 6 6 C 1.53182 * 109.54241 * 274.55745 * 4 3 2 7 7 C 1.53091 * 109.16116 * 183.14796 * 6 4 3 8 8 O 1.42900 * 109.41303 * 57.60774 * 7 6 4 9 9 C 1.42902 * 114.10009 * 298.83867 * 8 7 6 10 10 C 1.53094 * 109.41091 * 61.15957 * 9 8 7 11 11 H 1.09002 * 109.52233 * 62.36694 * 10 9 8 12 12 O 1.42910 * 109.51829 * 182.48560 * 10 9 8 13 13 C 1.42903 * 113.99856 * 269.99738 * 12 10 9 14 14 H 1.09001 * 109.47069 * 30.00829 * 13 12 10 15 15 C 1.52995 * 109.47256 * 270.00066 * 13 12 10 16 16 C 1.53004 * 109.46729 * 150.00126 * 13 12 10 17 17 C 1.50700 * 109.47208 * 295.00066 * 16 13 12 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 300.00001 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00094 * 21 19 17 25 25 H 1.08999 * 109.47502 * 299.99693 * 1 2 3 26 26 H 1.08995 * 109.47163 * 60.00216 * 1 2 3 27 27 H 1.09003 * 109.46582 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47502 * 240.00307 * 2 1 3 29 29 H 1.09004 * 109.47334 * 119.99661 * 2 1 3 30 30 H 1.00905 * 110.99784 * 303.95620 * 3 2 1 31 31 H 1.09002 * 109.52001 * 63.23905 * 6 4 3 32 32 H 1.09002 * 109.51741 * 303.05717 * 6 4 3 33 33 H 1.08998 * 109.48051 * 297.62728 * 7 6 4 34 34 H 1.08995 * 109.48773 * 177.59413 * 7 6 4 35 35 H 1.08995 * 109.48275 * 301.17904 * 9 8 7 36 36 H 1.08997 * 109.48019 * 181.14213 * 9 8 7 37 37 H 1.09000 * 109.47246 * 300.00108 * 15 13 12 38 38 H 1.09004 * 109.46998 * 60.00621 * 15 13 12 39 39 H 1.09001 * 109.46934 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.47074 * 175.00375 * 16 13 12 41 41 H 1.08998 * 109.47285 * 55.00210 * 16 13 12 42 42 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4243 0.0006 5 1 3.8767 0.5909 -0.5847 6 6 4.0028 1.3236 1.4399 7 6 5.5290 1.4445 1.4374 8 8 5.9065 2.6811 0.8289 9 6 5.4932 2.8116 -0.5328 10 6 3.9656 2.7457 -0.6094 11 1 3.5367 3.5802 -0.0547 12 8 3.5525 2.8178 -1.9756 13 6 3.3239 4.1483 -2.4442 14 1 3.9754 4.8390 -1.9088 15 6 1.8631 4.5314 -2.1992 16 6 3.6257 4.2202 -3.9424 17 6 5.0927 3.9631 -4.1723 18 1 5.7445 3.7675 -3.3337 19 6 5.6027 3.9775 -5.4532 20 7 4.8090 4.2161 -6.4743 21 14 7.4210 3.6580 -5.7382 22 1 7.7138 3.7279 -7.1923 23 1 8.2218 4.6829 -5.0217 24 1 7.7725 2.3087 -5.2273 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6441 1.9013 -0.7814 31 1 3.7142 0.3616 1.8634 32 1 3.5746 2.1287 2.0370 33 1 5.9583 0.6161 0.8738 34 1 5.8976 1.4163 2.4627 35 1 5.9220 2.0012 -1.1221 36 1 5.8360 3.7684 -0.9266 37 1 1.2116 3.8407 -2.7346 38 1 1.6482 4.4802 -1.1318 39 1 1.6889 5.5465 -2.5562 40 1 3.3672 5.2102 -4.3180 41 1 3.0381 3.4674 -4.4679 42 1 3.8647 4.3817 -6.3263 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686580946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:11 Heat of formation + Delta-G solvation = -136.800828 kcal Electronic energy + Delta-G solvation = -20662.482704 eV Core-core repulsion = 17640.761558 eV Total energy + Delta-G solvation = -3021.721147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.00684 -38.80212 -37.39821 -35.61548 -33.65985 -32.87984 -30.97469 -29.60365 -28.95187 -25.27372 -24.97148 -24.37162 -22.80000 -22.06797 -21.24214 -18.98404 -18.22670 -17.40893 -17.22300 -16.45290 -16.30879 -15.82873 -15.62261 -15.45530 -15.26915 -14.65438 -14.56500 -14.39577 -14.02661 -13.55432 -13.37945 -13.20063 -13.05370 -12.82291 -12.71764 -12.56071 -12.51378 -12.30822 -12.03330 -11.96619 -11.84275 -11.52859 -11.24353 -11.10119 -10.67099 -10.54408 -10.13259 -9.50464 -8.65413 -6.33532 1.50122 1.58306 1.77151 2.48648 2.56022 2.95605 3.10976 3.20566 3.58958 3.81562 3.95510 4.01703 4.09655 4.13551 4.22207 4.29274 4.33110 4.39252 4.42089 4.55970 4.60466 4.63265 4.72220 4.78015 4.80315 4.93724 5.00697 5.01436 5.07668 5.11134 5.16587 5.23156 5.30497 5.32723 5.99416 6.01121 6.05028 6.20730 6.30008 6.44005 6.61706 7.45086 8.75612 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.006391 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.808635 B = 4380.098044 C = 5193.051428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.683 5.683 4 C 0.093 3.907 5 H 0.038 0.962 6 C -0.129 4.129 7 C 0.050 3.950 8 O -0.390 6.390 9 C 0.049 3.951 10 C 0.058 3.942 11 H 0.072 0.928 12 O -0.378 6.378 13 C 0.106 3.894 14 H 0.048 0.952 15 C -0.163 4.163 16 C 0.011 3.989 17 C -0.597 4.597 18 H 0.049 0.951 19 C -0.040 4.040 20 N -0.942 5.942 21 Si 1.111 2.889 22 H -0.284 1.284 23 H -0.267 1.267 24 H -0.274 1.274 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.017 0.983 29 H 0.083 0.917 30 H 0.342 0.658 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.124 0.876 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.008 0.992 41 H -0.011 1.011 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -7.270 17.578 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 N -0.315 5.315 4 C -0.018 4.018 5 H 0.056 0.944 6 C -0.167 4.167 7 C -0.027 4.027 8 O -0.309 6.309 9 C -0.028 4.028 10 C -0.001 4.001 11 H 0.090 0.910 12 O -0.297 6.297 13 C 0.049 3.951 14 H 0.066 0.934 15 C -0.220 4.220 16 C -0.026 4.026 17 C -0.635 4.635 18 H 0.068 0.932 19 C -0.237 4.237 20 N -0.580 5.580 21 Si 0.933 3.067 22 H -0.209 1.209 23 H -0.192 1.192 24 H -0.200 1.200 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.161 0.839 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.008 0.992 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.115 -7.343 17.076 18.847 hybrid contribution -1.268 0.031 -0.367 1.320 sum -4.382 -7.312 16.709 18.758 Atomic orbital electron populations 1.21722 0.93790 1.02532 1.02132 1.22044 0.96661 0.88750 1.00323 1.60708 1.06287 1.14519 1.49955 1.21625 0.88978 0.94709 0.96453 0.94428 1.22178 0.95524 1.04394 0.94650 1.22917 0.94168 0.85743 0.99826 1.87916 1.78415 1.39489 1.25129 1.22923 0.94409 1.02321 0.83192 1.22869 0.94489 0.99033 0.83660 0.91031 1.87963 1.87541 1.28276 1.25969 1.22023 0.95333 0.82783 0.94991 0.93425 1.22241 0.95755 1.01813 1.02215 1.19277 0.96437 0.94751 0.92112 1.22311 0.94759 1.51322 0.95086 0.93222 1.27273 1.10144 0.93711 0.92565 1.70921 1.06232 1.47350 1.33492 0.83013 0.69952 0.77561 0.76206 1.20893 1.19221 1.19954 0.91582 0.93588 0.90702 0.96491 0.89894 0.83938 0.88545 0.90304 0.92804 0.85773 0.93428 0.89760 0.92594 0.91036 0.91311 0.97406 0.99237 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 10.17 71.98 0.73 -1.89 16 2 C 0.05 1.11 6.21 86.30 0.54 1.64 16 3 N -0.68 -17.55 6.31 -490.95 -3.10 -20.65 16 4 C 0.09 2.54 2.28 45.03 0.10 2.65 16 5 H 0.04 1.14 7.81 -2.38 -0.02 1.12 16 6 C -0.13 -2.75 5.63 30.69 0.17 -2.57 16 7 C 0.05 1.08 6.84 72.01 0.49 1.58 16 8 O -0.39 -11.64 10.76 -148.98 -1.60 -13.25 16 9 C 0.05 1.68 6.46 72.01 0.47 2.15 16 10 C 0.06 1.92 2.10 30.68 0.06 1.98 16 11 H 0.07 2.30 7.63 -2.39 -0.02 2.28 16 12 O -0.38 -15.30 8.69 -148.98 -1.30 -16.60 16 13 C 0.11 4.40 2.46 30.59 0.08 4.47 16 14 H 0.05 1.97 7.65 -2.39 -0.02 1.96 16 15 C -0.16 -5.39 9.52 71.98 0.69 -4.71 16 16 C 0.01 0.59 4.00 29.85 0.12 0.71 16 17 C -0.60 -34.32 8.88 25.60 0.23 -34.09 16 18 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 19 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 20 N -0.94 -59.34 13.65 21.45 0.29 -59.04 16 21 Si 1.11 51.53 29.90 68.60 2.05 53.58 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.02 0.41 8.06 -2.39 -0.02 0.39 16 29 H 0.08 1.54 7.54 -2.38 -0.02 1.52 16 30 H 0.34 9.88 7.78 -89.69 -0.70 9.18 16 31 H 0.10 1.63 7.57 -2.39 -0.02 1.61 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 3.12 7.99 -2.39 -0.02 3.11 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 2.02 7.97 -2.38 -0.02 2.00 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.01 0.43 8.01 -2.39 -0.02 0.41 16 41 H -0.01 -0.61 8.01 -2.39 -0.02 -0.63 16 42 H 0.25 16.18 7.22 -92.70 -0.67 15.51 16 Total: -1.00 -66.41 334.91 0.85 -65.56 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.37 Total: 20.38 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 4.14 Total: -29.99 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -2.81 Total: -79.69 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -2.90 Total: -29.84 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -66.41 0.85 -65.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686580946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.242 kcal (2) G-P(sol) polarization free energy of solvation -66.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds