Wall clock time and date at job start Mon Mar 30 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.46675 * 2 1 4 4 C 1.46902 * 110.99819 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.54291 * 35.00242 * 4 3 2 6 6 C 1.53178 * 109.61777 * 274.77972 * 4 3 2 7 7 C 1.53090 * 109.16307 * 183.10865 * 6 4 3 8 8 O 1.42899 * 109.41602 * 57.60933 * 7 6 4 9 9 C 1.42902 * 114.09845 * 298.83901 * 8 7 6 10 10 C 1.53090 * 109.41244 * 61.15908 * 9 8 7 11 11 H 1.09001 * 109.57330 * 182.45581 * 10 9 8 12 12 O 1.42901 * 109.52480 * 62.29799 * 10 9 8 13 13 C 1.42900 * 113.99973 * 90.31420 * 12 10 9 14 14 H 1.08994 * 109.47156 * 329.99924 * 13 12 10 15 15 C 1.53001 * 109.47244 * 90.00363 * 13 12 10 16 16 C 1.53001 * 109.46938 * 210.00213 * 13 12 10 17 17 C 1.50702 * 109.47131 * 64.99816 * 16 13 12 18 18 H 1.07993 * 120.00144 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99780 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99648 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00039 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47328 * 89.99426 * 21 19 17 23 23 H 1.48505 * 109.46745 * 209.99412 * 21 19 17 24 24 H 1.48496 * 109.46881 * 329.99106 * 21 19 17 25 25 H 1.09000 * 109.46694 * 299.99336 * 1 2 3 26 26 H 1.08995 * 109.47892 * 59.99659 * 1 2 3 27 27 H 1.09007 * 109.46900 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46694 * 240.00664 * 2 1 3 29 29 H 1.08994 * 109.47013 * 120.00105 * 2 1 3 30 30 H 1.00904 * 111.00047 * 56.04931 * 3 2 1 31 31 H 1.09003 * 109.52205 * 303.01775 * 6 4 3 32 32 H 1.09000 * 109.52518 * 63.19769 * 6 4 3 33 33 H 1.08998 * 109.48184 * 297.61931 * 7 6 4 34 34 H 1.09007 * 109.47987 * 177.59100 * 7 6 4 35 35 H 1.08993 * 109.47932 * 301.17777 * 9 8 7 36 36 H 1.09002 * 109.48128 * 181.14062 * 9 8 7 37 37 H 1.08998 * 109.46550 * 299.99836 * 15 13 12 38 38 H 1.08994 * 109.47403 * 59.99712 * 15 13 12 39 39 H 1.09003 * 109.46906 * 180.02562 * 15 13 12 40 40 H 1.09006 * 109.46893 * 184.99697 * 16 13 12 41 41 H 1.08997 * 109.47259 * 305.00089 * 16 13 12 42 42 H 0.96998 * 119.99671 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 1 3.8748 0.5930 -0.5901 6 6 4.0060 1.3176 1.4370 7 6 5.5322 1.4376 1.4315 8 8 5.9092 2.6763 0.8271 9 6 5.4929 2.8124 -0.5331 10 6 3.9651 2.7478 -0.6066 11 1 3.6467 2.8076 -1.6473 12 8 3.4051 3.8384 0.1275 13 6 3.1914 5.0159 -0.6534 14 1 3.9322 5.0619 -1.4515 15 6 1.7880 4.9767 -1.2618 16 6 3.3259 6.2512 0.2392 17 6 4.7432 6.3569 0.7403 18 1 5.4749 5.6173 0.4508 19 6 5.1060 7.3986 1.5677 20 7 6.3430 7.4911 2.0046 21 14 3.8405 8.6783 2.0679 22 1 3.1676 8.2464 3.3192 23 1 4.5167 9.9811 2.2938 24 1 2.8315 8.8250 0.9884 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6441 1.9013 0.7814 31 1 3.5796 2.1206 2.0383 32 1 3.7178 0.3542 1.8575 33 1 5.9597 0.6111 0.8639 34 1 5.9031 1.4052 2.4561 35 1 5.9199 2.0040 -1.1265 36 1 5.8354 3.7706 -0.9240 37 1 1.6923 4.0966 -1.8977 38 1 1.0472 4.9306 -0.4637 39 1 1.6253 5.8747 -1.8578 40 1 3.0761 7.1434 -0.3351 41 1 2.6465 6.1627 1.0869 42 1 6.5981 8.2236 2.5869 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686580948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:17 Heat of formation + Delta-G solvation = -124.366346 kcal Electronic energy + Delta-G solvation = -20903.525652 eV Core-core repulsion = 17882.343704 eV Total energy + Delta-G solvation = -3021.181947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86474 -38.34641 -37.34524 -35.09506 -33.61336 -32.78878 -31.02506 -29.65316 -29.40519 -25.12783 -24.65760 -24.17522 -22.82112 -21.81633 -20.93939 -18.81641 -17.62304 -17.53799 -16.70636 -16.58313 -16.44895 -15.91824 -15.76593 -15.24615 -14.84404 -14.58999 -14.43372 -14.16887 -13.93844 -13.47887 -13.39111 -13.08115 -12.92768 -12.67920 -12.64977 -12.51829 -12.33047 -12.21598 -12.03202 -11.79213 -11.57099 -11.42473 -11.33499 -11.14722 -10.74253 -10.67688 -9.80474 -9.24826 -8.17168 -6.17567 1.36921 1.38346 1.49545 2.41994 2.87050 3.09550 3.19859 3.28695 3.82167 3.83664 4.01520 4.15514 4.24750 4.28443 4.37853 4.40087 4.45509 4.52004 4.55325 4.58375 4.65421 4.69016 4.76745 4.87560 4.96706 5.01412 5.07467 5.14933 5.17106 5.22328 5.30880 5.37097 5.41039 5.48979 5.75840 6.14664 6.36988 6.43864 6.46312 6.76548 6.90837 7.43202 9.00100 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.006667 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.431302 B = 4198.505282 C = 4899.636174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 N -0.683 5.683 4 C 0.102 3.898 5 H 0.105 0.895 6 C -0.170 4.170 7 C 0.058 3.942 8 O -0.400 6.400 9 C 0.041 3.959 10 C 0.067 3.933 11 H 0.075 0.925 12 O -0.364 6.364 13 C 0.104 3.896 14 H 0.039 0.961 15 C -0.155 4.155 16 C -0.011 4.011 17 C -0.501 4.501 18 H 0.036 0.964 19 C -0.001 4.001 20 N -0.955 5.955 21 Si 0.945 3.055 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.244 1.244 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.343 0.657 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.014 0.986 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 -16.607 -6.188 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 N -0.314 5.314 4 C -0.008 4.008 5 H 0.123 0.877 6 C -0.210 4.210 7 C -0.019 4.019 8 O -0.319 6.319 9 C -0.037 4.037 10 C 0.008 3.992 11 H 0.093 0.907 12 O -0.283 6.283 13 C 0.046 3.954 14 H 0.058 0.942 15 C -0.213 4.213 16 C -0.048 4.048 17 C -0.539 4.539 18 H 0.054 0.946 19 C -0.196 4.196 20 N -0.597 5.597 21 Si 0.769 3.231 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.167 1.167 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.161 0.839 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.032 0.968 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.282 -16.315 -6.496 20.350 hybrid contribution 0.313 0.561 1.178 1.342 sum -9.969 -15.755 -5.318 19.387 Atomic orbital electron populations 1.21726 0.94364 1.02286 1.01959 1.22024 0.96207 0.88672 1.00687 1.60515 1.06119 1.14064 1.50659 1.21592 0.88791 0.95371 0.95057 0.87740 1.22732 0.97207 1.02329 0.98706 1.22664 0.94252 0.86153 0.98856 1.88097 1.77948 1.39019 1.26832 1.23156 0.95310 1.01692 0.83526 1.22822 0.91924 0.88088 0.96397 0.90672 1.87989 1.82460 1.21023 1.36869 1.21947 0.95514 0.85443 0.92509 0.94246 1.22162 0.96242 1.02111 1.00736 1.19677 0.95278 0.94128 0.95754 1.21352 0.95517 1.08989 1.28081 0.94567 1.25952 0.97102 1.00404 0.96162 1.70102 1.19792 1.33396 1.36454 0.85739 0.79681 0.78100 0.79534 1.20068 1.21194 1.16743 0.93279 0.92494 0.90795 0.90536 0.94985 0.83862 0.93026 0.89231 0.91103 0.89423 0.90242 0.91565 0.91520 0.92554 0.91505 0.94793 0.96797 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.17 71.98 0.73 -1.53 16 2 C 0.05 0.92 6.21 86.31 0.54 1.45 16 3 N -0.68 -15.98 6.08 -490.95 -2.98 -18.96 16 4 C 0.10 2.58 2.33 45.03 0.11 2.68 16 5 H 0.10 2.14 7.80 -2.39 -0.02 2.12 16 6 C -0.17 -4.58 5.24 30.68 0.16 -4.42 16 7 C 0.06 1.70 6.84 72.01 0.49 2.20 16 8 O -0.40 -16.43 10.69 -141.82 -1.52 -17.95 16 9 C 0.04 1.42 6.49 72.01 0.47 1.89 16 10 C 0.07 2.14 2.43 30.68 0.07 2.22 16 11 H 0.08 2.21 7.63 -2.39 -0.02 2.19 16 12 O -0.36 -14.75 8.59 -141.82 -1.22 -15.97 16 13 C 0.10 4.21 2.46 30.60 0.08 4.28 16 14 H 0.04 1.63 7.65 -2.39 -0.02 1.61 16 15 C -0.16 -4.89 9.53 71.98 0.69 -4.20 16 16 C -0.01 -0.54 3.75 29.85 0.11 -0.43 16 17 C -0.50 -30.21 9.43 25.60 0.24 -29.97 16 18 H 0.04 2.43 7.72 -2.91 -0.02 2.41 16 19 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 20 N -0.96 -63.07 13.96 21.45 0.30 -62.77 16 21 Si 0.95 46.56 27.47 68.60 1.88 48.45 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.24 -10.98 6.54 99.48 0.65 -10.33 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 29 H 0.03 0.53 7.53 -2.39 -0.02 0.51 16 30 H 0.34 9.01 8.42 -89.69 -0.76 8.25 16 31 H 0.05 1.76 7.78 -2.39 -0.02 1.74 16 32 H 0.09 1.87 7.57 -2.39 -0.02 1.85 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.73 7.73 -2.39 -0.02 2.71 16 37 H 0.07 1.86 7.97 -2.39 -0.02 1.84 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.03 1.60 7.20 -2.38 -0.02 1.58 16 41 H 0.01 0.68 7.57 -2.39 -0.02 0.67 16 42 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -72.89 331.96 0.77 -72.12 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.16 Total: 20.51 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 4.15 Total: -25.43 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -2.68 Total: -81.74 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -2.73 Total: -33.92 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.45 kcal Total: -72.89 0.77 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686580948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.244 kcal (2) G-P(sol) polarization free energy of solvation -72.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds