Wall clock time and date at job start Mon Mar 30 2020 04:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99545 * 2 1 4 4 H 1.08995 * 109.50666 * 330.07770 * 3 2 1 5 5 C 1.53116 * 109.53257 * 90.18107 * 3 2 1 6 6 C 1.53125 * 109.15732 * 177.61336 * 5 3 2 7 7 C 1.53036 * 109.27763 * 302.34247 * 6 5 3 8 8 H 1.09008 * 109.45207 * 299.17030 * 7 6 5 9 9 C 1.52995 * 109.46778 * 179.19798 * 7 6 5 10 10 N 1.46845 * 109.52388 * 59.17604 * 7 6 5 11 11 C 1.46900 * 111.00009 * 174.15917 * 10 7 6 12 12 C 1.53005 * 109.47410 * 195.30360 * 11 10 7 13 13 O 1.42899 * 109.46968 * 64.99942 * 12 11 10 14 14 C 1.42899 * 113.99921 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47137 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99973 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99756 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00231 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99656 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47110 * 60.00008 * 19 17 15 21 21 H 1.48506 * 109.46830 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47178 * 299.99822 * 19 17 15 23 23 C 1.46845 * 111.20405 * 298.26245 * 10 7 6 24 24 H 1.09000 * 109.47526 * 59.99820 * 1 2 3 25 25 H 1.08999 * 109.47233 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47272 * 299.99881 * 1 2 3 27 27 H 1.08996 * 109.52206 * 297.50976 * 5 3 2 28 28 H 1.08994 * 109.52887 * 57.70472 * 5 3 2 29 29 H 1.09006 * 109.50269 * 182.40374 * 6 5 3 30 30 H 1.08999 * 109.50265 * 62.28322 * 6 5 3 31 31 H 1.09003 * 109.46883 * 292.57501 * 9 7 6 32 32 H 1.08993 * 109.47708 * 172.57463 * 9 7 6 33 33 H 1.09009 * 109.47136 * 52.56521 * 9 7 6 34 34 H 1.09002 * 109.47592 * 315.30735 * 11 10 7 35 35 H 1.09005 * 109.46864 * 75.30462 * 11 10 7 36 36 H 1.08992 * 109.46954 * 185.00291 * 12 11 10 37 37 H 1.09000 * 109.46906 * 305.00460 * 12 11 10 38 38 H 1.09001 * 109.47191 * 300.00139 * 14 13 12 39 39 H 1.09003 * 109.46918 * 60.00190 * 14 13 12 40 40 H 0.97005 * 119.99575 * 179.97438 * 18 17 15 41 41 H 1.08990 * 109.46616 * 181.75684 * 23 10 7 42 42 H 1.09007 * 109.45659 * 301.72377 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3447 2.0001 -0.5125 5 6 2.2225 1.7714 1.4430 6 6 2.8997 3.1447 1.4332 7 6 4.2230 3.0500 0.6704 8 1 4.8792 2.3364 1.1689 9 6 4.8939 4.4247 0.6407 10 7 3.9662 2.6011 -0.7040 11 6 5.1964 2.6313 -1.5062 12 6 4.8397 2.5338 -2.9909 13 8 4.1051 3.6956 -3.3815 14 6 3.7202 3.7044 -4.7577 15 6 2.9563 4.9684 -5.0576 16 1 2.7824 5.6927 -4.2756 17 6 2.4793 5.2000 -6.3303 18 7 2.6915 4.3183 -7.2826 19 14 1.5318 6.7664 -6.7018 20 1 2.3922 7.9438 -6.4213 21 1 1.1319 6.7756 -8.1320 22 1 0.3184 6.8253 -5.8477 23 6 3.3593 1.2641 -0.7213 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.2592 1.8439 1.9478 28 1 2.8565 1.0563 1.9672 29 1 3.0923 3.4628 2.4579 30 1 2.2482 3.8682 0.9433 31 1 4.3006 5.1055 0.0303 32 1 5.8931 4.3324 0.2152 33 1 4.9659 4.8159 1.6557 34 1 5.7284 3.5645 -1.3209 35 1 5.8316 1.7899 -1.2291 36 1 5.7539 2.4667 -3.5805 37 1 4.2316 1.6453 -3.1609 38 1 4.6111 3.6614 -5.3844 39 1 3.0888 2.8402 -4.9639 40 1 2.3555 4.4812 -8.1780 41 1 3.2098 0.9464 -1.7531 42 1 4.0196 0.5590 -0.2164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687213466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:03 Heat of formation + Delta-G solvation = -96.550267 kcal Electronic energy + Delta-G solvation = -20187.405408 eV Core-core repulsion = 17167.429657 eV Total energy + Delta-G solvation = -3019.975751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.65248 -37.49104 -36.34538 -33.36441 -32.48624 -31.86126 -28.91790 -27.40878 -26.66196 -25.61230 -24.05814 -22.25140 -21.57971 -20.83240 -19.68986 -16.76513 -16.33984 -16.18832 -15.57860 -15.22760 -14.89477 -14.83558 -14.32893 -14.16654 -13.92391 -13.48402 -13.37568 -12.87916 -12.59223 -12.34750 -11.94663 -11.82659 -11.69887 -11.55099 -11.19547 -10.95546 -10.85375 -10.79635 -10.73854 -10.68412 -10.31085 -10.20586 -9.93518 -9.46334 -9.02984 -8.72378 -8.08413 -8.01630 -6.04898 -4.05747 3.35592 3.37919 3.42103 3.50014 4.25790 4.39996 4.72386 4.81425 4.88699 4.95927 5.12888 5.29091 5.31413 5.33201 5.36822 5.43324 5.51435 5.55206 5.58653 5.65377 5.73243 5.81925 5.84924 5.89532 5.93692 6.01486 6.08102 6.09023 6.21994 6.26612 6.41112 6.45054 7.13329 7.18698 7.30968 7.38886 7.51645 7.86527 8.24022 8.69982 9.09065 9.58833 11.06780 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.005097 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.007152 B = 5492.369282 C = 5998.048409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.091 3.909 4 H 0.075 0.925 5 C -0.139 4.139 6 C -0.109 4.109 7 C 0.081 3.919 8 H 0.035 0.965 9 C -0.148 4.148 10 N -0.516 5.516 11 C 0.057 3.943 12 C 0.067 3.933 13 O -0.379 6.379 14 C 0.195 3.805 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.061 3.939 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.263 0.737 41 H 0.085 0.915 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -6.221 17.406 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C 0.033 3.967 4 H 0.093 0.907 5 C -0.177 4.177 6 C -0.147 4.147 7 C -0.027 4.027 8 H 0.053 0.947 9 C -0.206 4.206 10 N -0.242 5.242 11 C -0.070 4.070 12 C -0.011 4.011 13 O -0.298 6.298 14 C 0.120 3.880 15 C -0.548 4.548 16 H 0.084 0.916 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.067 4.067 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.493 -5.947 17.125 18.135 hybrid contribution -0.106 0.077 -0.216 0.253 sum 0.387 -5.870 16.908 17.903 Atomic orbital electron populations 1.22767 0.81078 1.02403 1.00148 1.87830 1.19683 1.28117 1.95095 1.22090 0.95298 0.84224 0.95059 0.90739 1.22066 1.00938 0.97426 0.97280 1.21585 0.96536 0.96956 0.99641 1.21619 0.95772 0.96588 0.88735 0.94727 1.21927 1.00630 0.96477 1.01550 1.61708 1.27243 1.24471 1.10828 1.22244 0.90233 1.01475 0.93053 1.22247 0.95169 0.90617 0.93070 1.87932 1.73350 1.38612 1.29952 1.20156 0.93964 0.97242 0.76632 1.21024 1.34147 1.04300 0.95320 0.91621 1.24940 0.96453 0.97358 0.95802 1.69960 1.46479 1.35294 1.02271 0.86421 0.80193 0.82960 0.77029 1.20058 1.21229 1.20075 1.22002 0.93940 0.89546 1.01219 0.93626 0.89891 0.94312 0.91911 0.91711 0.91406 0.90571 0.90785 0.92501 0.92564 0.89261 0.94348 0.94387 0.94681 0.98085 0.98000 0.92716 0.89698 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.45 16 2 O -0.39 -5.37 10.35 -35.23 -0.36 -5.74 16 3 C 0.09 1.26 2.77 -26.65 -0.07 1.19 16 4 H 0.07 1.12 7.79 -51.93 -0.40 0.72 16 5 C -0.14 -1.61 5.62 -26.61 -0.15 -1.76 16 6 C -0.11 -1.25 5.37 -26.65 -0.14 -1.40 16 7 C 0.08 1.03 2.44 -67.73 -0.17 0.86 16 8 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 9 C -0.15 -1.79 8.57 37.15 0.32 -1.47 16 10 N -0.52 -7.98 4.40 -226.69 -1.00 -8.98 16 11 C 0.06 0.89 5.15 -3.82 -0.02 0.87 16 12 C 0.07 1.29 6.08 37.16 0.23 1.51 16 13 O -0.38 -9.35 10.27 -35.23 -0.36 -9.71 16 14 C 0.19 5.47 5.69 36.01 0.20 5.67 16 15 C -0.51 -15.29 9.43 -34.44 -0.32 -15.61 16 16 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 19 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.06 0.90 4.96 -3.83 -0.02 0.89 16 24 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.36 7.95 -51.93 -0.41 -0.05 16 27 H 0.06 0.66 7.95 -51.93 -0.41 0.24 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.66 6.45 -51.93 -0.33 0.33 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.09 1.36 5.58 -51.93 -0.29 1.07 16 35 H 0.04 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.67 6.45 -51.93 -0.34 0.33 16 38 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 1.39 6.38 -51.93 -0.33 1.06 16 42 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -32.01 331.91 -7.71 -39.72 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -7.55 Total: -4.51 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 0.85 Total: -6.28 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.26 Total: -35.63 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.73 Total: -15.45 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.01 -7.71 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687213466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.829 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds