Wall clock time and date at job start Mon Mar 30 2020 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99545 * 2 1 4 4 H 1.08995 * 109.50666 * 330.07770 * 3 2 1 5 5 C 1.53116 * 109.53257 * 90.18107 * 3 2 1 6 6 C 1.53125 * 109.15732 * 177.61336 * 5 3 2 7 7 C 1.53036 * 109.27763 * 302.34247 * 6 5 3 8 8 H 1.09008 * 109.45207 * 299.17030 * 7 6 5 9 9 C 1.52995 * 109.46778 * 179.19798 * 7 6 5 10 10 N 1.46845 * 109.52388 * 59.17604 * 7 6 5 11 11 C 1.46900 * 111.00009 * 174.15917 * 10 7 6 12 12 C 1.53005 * 109.47410 * 195.30360 * 11 10 7 13 13 O 1.42899 * 109.46968 * 64.99942 * 12 11 10 14 14 C 1.42899 * 113.99921 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47137 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99973 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99756 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00231 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99656 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47110 * 60.00008 * 19 17 15 21 21 H 1.48506 * 109.46830 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47178 * 299.99822 * 19 17 15 23 23 C 1.46845 * 111.20405 * 298.26245 * 10 7 6 24 24 H 1.09000 * 109.47526 * 59.99820 * 1 2 3 25 25 H 1.08999 * 109.47233 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47272 * 299.99881 * 1 2 3 27 27 H 1.08996 * 109.52206 * 297.50976 * 5 3 2 28 28 H 1.08994 * 109.52887 * 57.70472 * 5 3 2 29 29 H 1.09006 * 109.50269 * 182.40374 * 6 5 3 30 30 H 1.08999 * 109.50265 * 62.28322 * 6 5 3 31 31 H 1.09003 * 109.46883 * 292.57501 * 9 7 6 32 32 H 1.08993 * 109.47708 * 172.57463 * 9 7 6 33 33 H 1.09009 * 109.47136 * 52.56521 * 9 7 6 34 34 H 1.09002 * 109.47592 * 315.30735 * 11 10 7 35 35 H 1.09005 * 109.46864 * 75.30462 * 11 10 7 36 36 H 1.08992 * 109.46954 * 185.00291 * 12 11 10 37 37 H 1.09000 * 109.46906 * 305.00460 * 12 11 10 38 38 H 1.09001 * 109.47191 * 300.00139 * 14 13 12 39 39 H 1.09003 * 109.46918 * 60.00190 * 14 13 12 40 40 H 0.97005 * 119.99575 * 179.97438 * 18 17 15 41 41 H 1.08990 * 109.46616 * 181.75684 * 23 10 7 42 42 H 1.09007 * 109.45659 * 301.72377 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3447 2.0001 -0.5125 5 6 2.2225 1.7714 1.4430 6 6 2.8997 3.1447 1.4332 7 6 4.2230 3.0500 0.6704 8 1 4.8792 2.3364 1.1689 9 6 4.8939 4.4247 0.6407 10 7 3.9662 2.6011 -0.7040 11 6 5.1964 2.6313 -1.5062 12 6 4.8397 2.5338 -2.9909 13 8 4.1051 3.6956 -3.3815 14 6 3.7202 3.7044 -4.7577 15 6 2.9563 4.9684 -5.0576 16 1 2.7824 5.6927 -4.2756 17 6 2.4793 5.2000 -6.3303 18 7 2.6915 4.3183 -7.2826 19 14 1.5318 6.7664 -6.7018 20 1 2.3922 7.9438 -6.4213 21 1 1.1319 6.7756 -8.1320 22 1 0.3184 6.8253 -5.8477 23 6 3.3593 1.2641 -0.7213 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.2592 1.8439 1.9478 28 1 2.8565 1.0563 1.9672 29 1 3.0923 3.4628 2.4579 30 1 2.2482 3.8682 0.9433 31 1 4.3006 5.1055 0.0303 32 1 5.8931 4.3324 0.2152 33 1 4.9659 4.8159 1.6557 34 1 5.7284 3.5645 -1.3209 35 1 5.8316 1.7899 -1.2291 36 1 5.7539 2.4667 -3.5805 37 1 4.2316 1.6453 -3.1609 38 1 4.6111 3.6614 -5.3844 39 1 3.0888 2.8402 -4.9639 40 1 2.3555 4.4812 -8.1780 41 1 3.2098 0.9464 -1.7531 42 1 4.0196 0.5590 -0.2164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687213466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:02 Heat of formation + Delta-G solvation = -118.827006 kcal Electronic energy + Delta-G solvation = -20188.371400 eV Core-core repulsion = 17167.429657 eV Total energy + Delta-G solvation = -3020.941743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74317 -38.77628 -37.98235 -35.05322 -34.21590 -32.88514 -30.48185 -28.83446 -28.22219 -26.60967 -25.24612 -24.45757 -22.75502 -22.02627 -20.74814 -18.61029 -17.84858 -17.50927 -17.16944 -16.50860 -16.31693 -16.16148 -15.92536 -15.50224 -15.18537 -14.70779 -14.57619 -14.39398 -13.78290 -13.71587 -13.39130 -13.08425 -12.95686 -12.82637 -12.71337 -12.59061 -12.52544 -12.23660 -12.01117 -11.85159 -11.73220 -11.52241 -11.29604 -11.23445 -10.83201 -10.47241 -10.16240 -9.17910 -8.30764 -6.42903 1.39390 1.44647 1.52990 2.35370 2.45562 3.02730 3.19908 3.25405 3.72662 3.80378 3.93277 4.07472 4.19631 4.27773 4.33639 4.41166 4.44851 4.50298 4.52811 4.58373 4.66339 4.67565 4.76542 4.80805 4.83810 4.86192 4.88628 5.00072 5.04449 5.11227 5.15543 5.20275 5.32309 5.46641 5.56198 5.98343 6.08031 6.17152 6.32636 6.58123 6.87240 7.29291 8.81567 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.005097 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.007152 B = 5492.369282 C = 5998.048409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.092 3.908 4 H 0.052 0.948 5 C -0.131 4.131 6 C -0.106 4.106 7 C 0.079 3.921 8 H 0.050 0.950 9 C -0.145 4.145 10 N -0.541 5.541 11 C 0.066 3.934 12 C 0.058 3.942 13 O -0.391 6.391 14 C 0.210 3.790 15 C -0.544 4.544 16 H 0.061 0.939 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.266 1.266 23 C 0.063 3.937 24 H 0.036 0.964 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.031 0.969 38 H -0.017 1.017 39 H -0.022 1.022 40 H 0.270 0.730 41 H 0.058 0.942 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 -5.576 19.166 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C 0.034 3.966 4 H 0.070 0.930 5 C -0.168 4.168 6 C -0.144 4.144 7 C -0.028 4.028 8 H 0.068 0.932 9 C -0.202 4.202 10 N -0.268 5.268 11 C -0.062 4.062 12 C -0.020 4.020 13 O -0.311 6.311 14 C 0.135 3.865 15 C -0.582 4.582 16 H 0.079 0.921 17 C -0.193 4.193 18 N -0.572 5.572 19 Si 0.805 3.195 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.191 1.191 23 C -0.065 4.065 24 H 0.054 0.946 25 H 0.120 0.880 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.001 0.999 39 H -0.005 1.005 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.337 -5.316 18.906 19.642 hybrid contribution -0.032 -0.219 -0.752 0.784 sum 0.305 -5.535 18.154 18.981 Atomic orbital electron populations 1.22948 0.79607 1.03835 1.00492 1.87796 1.21336 1.28054 1.95264 1.22045 0.94189 0.83949 0.96418 0.92999 1.22000 1.01891 0.97472 0.95478 1.21597 0.95516 0.96474 1.00797 1.21744 0.96833 0.97024 0.87232 0.93167 1.21901 1.00038 0.95608 1.02645 1.61663 1.27441 1.24900 1.12798 1.22155 0.90810 1.02899 0.90306 1.22589 0.94718 0.88598 0.96055 1.87891 1.74184 1.41235 1.27765 1.19767 0.92573 0.95906 0.78266 1.21340 1.35713 1.05083 0.96066 0.92096 1.25970 0.96931 1.01215 0.95154 1.70074 1.46920 1.37324 1.02854 0.85245 0.78728 0.78116 0.77385 1.18853 1.19921 1.19127 1.21934 0.94942 0.89639 0.99956 0.94569 0.87966 0.92686 0.90565 0.90865 0.88569 0.92307 0.93512 0.92275 0.89933 0.88842 0.91431 0.93484 0.95116 0.99903 1.00467 0.92097 0.92376 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.82 113.37 1.23 1.79 16 2 O -0.41 -11.01 10.35 -148.98 -1.54 -12.56 16 3 C 0.09 2.52 2.77 30.65 0.08 2.61 16 4 H 0.05 1.62 7.79 -2.39 -0.02 1.60 16 5 C -0.13 -2.76 5.62 30.67 0.17 -2.59 16 6 C -0.11 -2.21 5.37 30.65 0.16 -2.05 16 7 C 0.08 1.86 2.44 44.94 0.11 1.97 16 8 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 9 C -0.14 -3.23 8.57 71.98 0.62 -2.61 16 10 N -0.54 -16.50 4.40 -871.10 -3.83 -20.34 16 11 C 0.07 1.99 5.15 86.31 0.44 2.44 16 12 C 0.06 2.27 6.08 71.98 0.44 2.71 16 13 O -0.39 -19.99 10.27 -148.98 -1.53 -21.52 16 14 C 0.21 12.33 5.69 71.24 0.41 12.73 16 15 C -0.54 -33.47 9.43 25.60 0.24 -33.23 16 16 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 17 C 0.01 0.32 5.46 84.65 0.46 0.79 16 18 N -0.93 -57.45 13.29 21.44 0.28 -57.16 16 19 Si 0.98 45.32 29.54 68.60 2.03 47.34 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 C 0.06 1.88 4.96 86.33 0.43 2.31 16 24 H 0.04 0.80 8.09 -2.39 -0.02 0.78 16 25 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 0.95 7.95 -2.38 -0.02 0.93 16 27 H 0.08 1.41 7.95 -2.39 -0.02 1.39 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.27 6.45 -2.39 -0.02 1.26 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.09 2.76 5.58 -2.39 -0.01 2.75 16 35 H 0.07 1.68 8.06 -2.38 -0.02 1.66 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.03 1.23 6.45 -2.39 -0.02 1.21 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 40 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 41 H 0.06 1.99 6.38 -2.39 -0.02 1.98 16 42 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -69.88 331.91 1.16 -68.72 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.96 Total: 8.66 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 4.79 Total: -13.14 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -3.55 Total: -77.50 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -3.07 Total: -34.08 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.88 1.16 -68.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687213466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.107 kcal (2) G-P(sol) polarization free energy of solvation -69.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds