Wall clock time and date at job start Mon Mar 30 2020 04:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99930 * 2 1 4 4 H 1.09001 * 109.50072 * 29.91560 * 3 2 1 5 5 C 1.53125 * 109.50024 * 269.80388 * 3 2 1 6 6 C 1.53120 * 109.15602 * 182.40311 * 5 3 2 7 7 C 1.53040 * 109.27776 * 57.65321 * 6 5 3 8 8 H 1.08999 * 109.45087 * 60.83493 * 7 6 5 9 9 C 1.53002 * 109.45894 * 180.80087 * 7 6 5 10 10 N 1.46838 * 109.52368 * 300.81594 * 7 6 5 11 11 C 1.46907 * 111.00293 * 185.84182 * 10 7 6 12 12 C 1.52999 * 109.46579 * 284.73521 * 11 10 7 13 13 O 1.42901 * 109.47364 * 66.26317 * 12 11 10 14 14 C 1.42903 * 113.99917 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47211 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99717 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00140 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99872 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47062 * 90.00301 * 19 17 15 21 21 H 1.48504 * 109.46824 * 209.99727 * 19 17 15 22 22 H 1.48499 * 109.47307 * 329.99837 * 19 17 15 23 23 C 1.46847 * 111.19801 * 61.74569 * 10 7 6 24 24 H 1.08997 * 109.47331 * 60.00152 * 1 2 3 25 25 H 1.08996 * 109.47122 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47404 * 299.99819 * 1 2 3 27 27 H 1.08995 * 109.51816 * 302.30690 * 5 3 2 28 28 H 1.09002 * 109.52405 * 62.43836 * 5 3 2 29 29 H 1.08997 * 109.50377 * 297.70854 * 6 5 3 30 30 H 1.09003 * 109.50167 * 177.59275 * 6 5 3 31 31 H 1.09000 * 109.47096 * 187.34268 * 9 7 6 32 32 H 1.09009 * 109.46984 * 67.34992 * 9 7 6 33 33 H 1.09002 * 109.47501 * 307.34981 * 9 7 6 34 34 H 1.09006 * 109.46683 * 44.72698 * 11 10 7 35 35 H 1.08991 * 109.47166 * 164.72971 * 11 10 7 36 36 H 1.09001 * 109.47011 * 186.25806 * 12 11 10 37 37 H 1.08992 * 109.47513 * 306.25457 * 12 11 10 38 38 H 1.08995 * 109.47259 * 299.99930 * 14 13 12 39 39 H 1.09005 * 109.47076 * 60.00012 * 14 13 12 40 40 H 0.96999 * 119.99805 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.46320 * 58.27566 * 23 10 7 42 42 H 1.08996 * 109.46431 * 178.25151 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 2.0002 0.5124 5 6 2.2226 1.7705 -1.4434 6 6 2.9003 3.1435 -1.4344 7 6 4.2236 3.0489 -0.6715 8 1 4.8794 2.3349 -1.1696 9 6 4.8948 4.4235 -0.6428 10 7 3.9666 2.6011 0.7031 11 6 5.1968 2.6314 1.5054 12 6 6.0883 1.4502 1.1166 13 8 6.5405 1.6172 -0.2286 14 6 7.3856 0.5625 -0.6929 15 6 7.8002 0.8400 -2.1149 16 1 7.4527 1.7324 -2.6143 17 6 8.6222 -0.0457 -2.7787 18 7 9.0441 -1.1332 -2.1710 19 14 9.1367 0.2987 -4.5411 20 1 10.3965 1.0850 -4.5443 21 1 9.3534 -0.9861 -5.2535 22 1 8.0694 1.0710 -5.2265 23 6 3.3593 1.2642 0.7213 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.8564 1.0548 -1.9670 28 1 1.2594 1.8420 -1.9486 29 1 2.2490 3.8676 -0.9450 30 1 3.0930 3.4610 -2.4593 31 1 5.8935 4.3314 -0.2159 32 1 4.3009 5.1052 -0.0339 33 1 4.9682 4.8134 -1.6581 34 1 5.7288 3.5646 1.3198 35 1 4.9427 2.5622 2.5630 36 1 6.9475 1.4077 1.7860 37 1 5.5194 0.5240 1.1964 38 1 8.2716 0.5020 -0.0610 39 1 6.8438 -0.3825 -0.6506 40 1 9.6228 -1.7561 -2.6379 41 1 4.0194 0.5586 0.2169 42 1 3.2095 0.9474 1.7534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687213467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:05 Heat of formation + Delta-G solvation = -96.217003 kcal Electronic energy + Delta-G solvation = -20719.370455 eV Core-core repulsion = 17699.409155 eV Total energy + Delta-G solvation = -3019.961300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.65697 -37.61458 -36.16175 -33.30743 -32.49958 -31.64574 -28.68601 -27.33563 -26.72193 -25.49400 -24.01628 -22.43288 -21.53347 -20.95237 -19.11030 -16.74663 -16.42748 -16.01941 -15.72039 -15.15382 -14.88549 -14.65280 -14.32729 -14.23308 -13.71982 -13.43650 -13.20111 -12.81928 -12.38523 -12.14864 -11.77827 -11.74084 -11.57897 -11.41432 -11.23975 -10.91234 -10.85437 -10.77500 -10.56933 -10.45302 -10.35830 -10.12019 -10.04964 -9.39552 -9.11844 -8.82284 -8.20251 -7.81213 -6.11838 -4.13825 3.28976 3.34210 3.38980 3.60521 4.32757 4.45465 4.87010 4.91922 4.98898 5.18748 5.22550 5.24767 5.30353 5.41435 5.48770 5.59868 5.62714 5.67956 5.72986 5.81180 5.91792 5.98483 6.08659 6.09305 6.11153 6.18470 6.19627 6.31121 6.38368 6.42957 6.60954 6.85002 7.10539 7.22507 7.39191 7.42644 7.50848 7.77262 8.13738 8.54360 8.98841 9.51140 10.99663 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.005796 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.116984 B = 4829.728314 C = 5115.022754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.096 3.904 4 H 0.064 0.936 5 C -0.142 4.142 6 C -0.107 4.107 7 C 0.067 3.933 8 H 0.088 0.912 9 C -0.139 4.139 10 N -0.525 5.525 11 C 0.053 3.947 12 C 0.021 3.979 13 O -0.388 6.388 14 C 0.195 3.805 15 C -0.513 4.513 16 H 0.065 0.935 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.054 3.946 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.264 0.736 41 H 0.055 0.945 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 6.850 5.548 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.038 3.962 4 H 0.082 0.918 5 C -0.180 4.180 6 C -0.145 4.145 7 C -0.041 4.041 8 H 0.105 0.895 9 C -0.196 4.196 10 N -0.251 5.251 11 C -0.074 4.074 12 C -0.058 4.058 13 O -0.308 6.308 14 C 0.120 3.880 15 C -0.551 4.551 16 H 0.084 0.916 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.733 3.267 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.074 4.074 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.589 7.000 5.601 17.124 hybrid contribution 0.819 -0.689 -1.058 1.505 sum -13.771 6.311 4.543 15.815 Atomic orbital electron populations 1.22733 0.81489 1.02379 0.99678 1.87904 1.19256 1.28201 1.95055 1.22064 0.94838 0.83714 0.95560 0.91823 1.22081 1.00836 0.98141 0.96977 1.21575 0.96677 0.96138 1.00083 1.21884 0.95791 0.98034 0.88378 0.89462 1.21808 1.00657 0.95807 1.01331 1.62147 1.25842 1.23944 1.13127 1.22365 0.88995 0.99059 0.97027 1.23061 0.97144 0.98382 0.87184 1.87867 1.68273 1.49322 1.25330 1.20184 0.87954 0.85079 0.94743 1.21018 1.29494 1.07747 0.96833 0.91641 1.24942 0.95877 0.94799 0.98816 1.69967 1.34755 1.11461 1.37516 0.86369 0.78998 0.77642 0.83687 1.20466 1.21085 1.19635 1.22004 0.94099 0.91090 1.00189 0.94282 0.89904 0.94267 0.90821 0.92321 0.91947 0.91383 0.91818 0.93055 0.92658 0.89360 0.90234 0.94348 0.94040 0.97906 0.97963 0.92667 0.92651 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.45 16 2 O -0.39 -5.64 10.35 -35.23 -0.36 -6.00 16 3 C 0.10 1.36 2.77 -26.65 -0.07 1.28 16 4 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 5 C -0.14 -2.02 5.62 -26.60 -0.15 -2.17 16 6 C -0.11 -1.48 5.37 -26.65 -0.14 -1.63 16 7 C 0.07 1.08 1.94 -67.73 -0.13 0.94 16 8 H 0.09 1.78 5.78 -51.93 -0.30 1.48 16 9 C -0.14 -2.04 8.57 37.16 0.32 -1.72 16 10 N -0.53 -8.02 4.69 -226.70 -1.06 -9.09 16 11 C 0.05 0.81 5.80 -3.82 -0.02 0.78 16 12 C 0.02 0.39 5.54 37.16 0.21 0.60 16 13 O -0.39 -8.96 7.52 -35.23 -0.26 -9.23 16 14 C 0.19 5.31 5.69 36.01 0.20 5.52 16 15 C -0.51 -14.94 9.43 -34.44 -0.32 -15.27 16 16 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 19 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.05 0.85 4.17 -3.84 -0.02 0.83 16 24 H 0.04 0.37 7.95 -51.93 -0.41 -0.04 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.06 0.73 7.95 -51.93 -0.41 0.31 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.01 6.45 -51.93 -0.33 0.68 16 32 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.32 5.58 -51.93 -0.29 1.03 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.78 6.05 -51.93 -0.31 0.47 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.06 1.04 6.44 -51.93 -0.33 0.70 16 42 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -30.71 325.62 -7.62 -38.34 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.42 Total: -1.67 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 0.86 Total: -7.83 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.33 Total: -35.38 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.63 Total: -15.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.71 -7.62 -38.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687213467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.879 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds