Wall clock time and date at job start Mon Mar 30 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47602 * 2 1 4 4 C 1.46901 * 111.00075 * 75.70045 * 3 2 1 5 5 C 1.50701 * 109.47220 * 199.57539 * 4 3 2 6 6 H 1.07999 * 119.99782 * 355.20153 * 5 4 3 7 7 C 1.37881 * 119.99919 * 175.48094 * 5 4 3 8 8 N 1.31503 * 119.99757 * 179.72069 * 7 5 4 9 9 Si 1.86799 * 119.99851 * 359.72436 * 7 5 4 10 10 H 1.48497 * 109.47415 * 89.99728 * 9 7 5 11 11 H 1.48497 * 109.47078 * 210.00079 * 9 7 5 12 12 H 1.48509 * 109.47137 * 329.99575 * 9 7 5 13 13 C 1.46893 * 111.00165 * 199.65946 * 3 2 1 14 14 C 1.53006 * 109.47491 * 66.04622 * 13 3 2 15 15 C 1.52997 * 109.47253 * 180.02562 * 14 13 3 16 16 O 1.42895 * 109.47350 * 180.02562 * 15 14 13 17 17 C 1.42894 * 114.00121 * 180.02562 * 16 15 14 18 18 H 1.09001 * 110.75793 * 32.01694 * 17 16 15 19 19 C 1.55313 * 110.84628 * 155.71302 * 17 16 15 20 20 C 1.54955 * 100.93939 * 152.32081 * 19 17 16 21 21 O 1.43642 * 105.13362 * 323.55086 * 20 19 17 22 22 C 1.43232 * 109.97591 * 24.43196 * 21 20 19 23 23 H 1.08995 * 109.47245 * 174.82645 * 1 2 3 24 24 H 1.09008 * 109.46569 * 294.82351 * 1 2 3 25 25 H 1.09004 * 109.47135 * 54.81769 * 1 2 3 26 26 H 1.09007 * 109.46803 * 239.99775 * 2 1 3 27 27 H 1.09001 * 109.46972 * 120.00579 * 2 1 3 28 28 H 1.08997 * 109.47062 * 79.57316 * 4 3 2 29 29 H 1.09003 * 109.47104 * 319.57169 * 4 3 2 30 30 H 0.97007 * 119.99824 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47401 * 186.04380 * 13 3 2 32 32 H 1.08997 * 109.47052 * 306.04344 * 13 3 2 33 33 H 1.09001 * 109.46316 * 299.99943 * 14 13 3 34 34 H 1.08997 * 109.47200 * 59.99812 * 14 13 3 35 35 H 1.09007 * 109.46877 * 299.99740 * 15 14 13 36 36 H 1.08997 * 109.47304 * 59.99712 * 15 14 13 37 37 H 1.09001 * 111.12128 * 270.23791 * 19 17 16 38 38 H 1.08996 * 111.12638 * 34.40037 * 19 17 16 39 39 H 1.09001 * 110.30352 * 204.63767 * 20 19 17 40 40 H 1.08996 * 110.39295 * 82.51266 * 20 19 17 41 41 H 1.09000 * 109.83232 * 238.77231 * 22 21 20 42 42 H 1.09005 * 109.91029 * 117.83523 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8760 1.9942 1.3289 5 6 1.9203 3.4951 1.2009 6 1 2.1204 3.9495 0.2418 7 6 1.7112 4.2880 2.3094 8 7 1.7553 5.5976 2.1987 9 14 1.3653 3.5019 3.9682 10 1 2.6461 3.2705 4.6832 11 1 0.5046 4.4047 4.7740 12 1 0.6699 2.2052 3.7662 13 6 3.4128 1.4507 -0.4614 14 6 3.4825 1.0400 -1.9336 15 6 4.9336 1.1079 -2.4139 16 8 4.9986 0.7249 -3.7891 17 6 6.3173 0.7538 -4.3387 18 1 7.0583 0.5079 -3.5781 19 6 6.4297 -0.2040 -5.5562 20 6 7.5529 0.4861 -6.3705 21 8 7.3340 1.8945 -6.1925 22 6 6.6176 2.1283 -4.9745 23 1 -0.3633 -1.0234 -0.0927 24 1 -0.3633 0.4315 0.9328 25 1 -0.3633 0.5921 -0.8400 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.6903 1.6601 1.9718 29 1 0.9228 1.6947 1.7647 30 1 1.6078 6.1555 2.9785 31 1 3.7847 2.4693 -0.3504 32 1 4.0251 0.7735 0.1341 33 1 3.1107 0.0214 -2.0446 34 1 2.8702 1.7172 -2.5291 35 1 5.3058 2.1264 -2.3028 36 1 5.5455 0.4305 -1.8184 37 1 6.7293 -1.2041 -5.2428 38 1 5.4973 -0.2338 -6.1199 39 1 7.4732 0.2211 -7.4248 40 1 8.5316 0.2034 -5.9830 41 1 5.6840 2.6486 -5.1885 42 1 7.2259 2.7250 -4.2947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687723109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:49 Heat of formation + Delta-G solvation = -115.544964 kcal Electronic energy + Delta-G solvation = -19339.207045 eV Core-core repulsion = 16318.407622 eV Total energy + Delta-G solvation = -3020.799423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.66209 -39.14197 -38.14502 -34.82551 -33.80646 -32.16485 -31.55862 -29.82270 -28.88932 -25.78598 -24.08498 -23.49924 -22.73346 -22.39761 -21.13513 -19.00023 -18.38272 -17.62892 -16.92837 -16.74289 -16.47951 -16.05079 -15.80855 -15.68556 -15.07930 -14.76606 -14.64377 -14.29696 -14.16085 -13.86554 -13.40039 -13.16202 -12.97748 -12.72474 -12.60021 -12.52718 -12.47446 -12.14803 -12.09232 -11.87775 -11.77038 -11.70399 -11.42188 -11.25681 -10.77775 -10.64548 -10.52176 -8.99497 -8.27214 -6.29914 1.33790 1.36163 1.46531 2.34603 2.36224 2.94608 3.05548 3.30614 3.42937 3.83475 3.93236 3.96639 4.11469 4.16707 4.23282 4.29614 4.38348 4.39755 4.53222 4.55792 4.63218 4.68590 4.71544 4.79420 4.80927 4.87602 4.91779 4.92473 5.04525 5.06201 5.18059 5.24187 5.30232 5.40407 5.60349 5.92427 6.03124 6.16689 6.44676 6.68709 6.76225 7.33333 8.89728 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026951 B = 0.003723 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.687942 B = 7519.515636 C = 8265.879340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.043 3.957 3 N -0.547 5.547 4 C 0.171 3.829 5 C -0.512 4.512 6 H 0.035 0.965 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.946 3.054 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.249 1.249 13 C 0.069 3.931 14 C -0.101 4.101 15 C 0.067 3.933 16 O -0.385 6.385 17 C 0.051 3.949 18 H 0.096 0.904 19 C -0.147 4.147 20 C 0.046 3.954 21 O -0.404 6.404 22 C 0.024 3.976 23 H 0.081 0.919 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.029 0.971 28 H -0.014 1.014 29 H 0.033 0.967 30 H 0.266 0.734 31 H 0.053 0.947 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.687 -16.478 -11.432 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 N -0.272 5.272 4 C 0.044 3.956 5 C -0.551 4.551 6 H 0.053 0.947 7 C -0.191 4.191 8 N -0.590 5.590 9 Si 0.770 3.230 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.172 1.172 13 C -0.059 4.059 14 C -0.139 4.139 15 C -0.010 4.010 16 O -0.304 6.304 17 C -0.007 4.007 18 H 0.113 0.887 19 C -0.185 4.185 20 C -0.029 4.029 21 O -0.324 6.324 22 C -0.053 4.053 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.004 0.996 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.278 -15.954 -11.906 21.963 hybrid contribution 0.335 0.164 1.668 1.709 sum 9.614 -15.790 -10.238 21.133 Atomic orbital electron populations 1.21736 0.94848 1.01918 1.01342 1.22251 0.96686 0.88655 1.00891 1.61842 1.20287 1.17651 1.27419 1.19974 0.95415 0.93471 0.86743 1.21285 1.47393 0.91023 0.95357 0.94708 1.25853 0.94878 0.95121 1.03220 1.70056 1.52062 1.05262 1.31669 0.85733 0.79051 0.79283 0.78980 1.19191 1.20763 1.17226 1.21806 0.88954 1.00423 0.94714 1.21378 0.95389 1.02546 0.94557 1.22509 0.97414 0.99473 0.81623 1.87908 1.27788 1.88661 1.26080 1.23835 0.85459 0.94583 0.96838 0.88653 1.23326 1.00264 0.99928 0.94936 1.23582 0.98141 0.79304 1.01905 1.88396 1.76958 1.25823 1.41270 1.23688 0.96861 0.98222 0.86541 0.90028 0.94483 0.92951 0.89280 0.95227 0.99608 0.94914 0.92499 0.92821 0.94609 0.90193 0.92361 0.93376 0.91309 0.87063 0.90047 0.87865 0.90176 0.91679 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 9.96 71.98 0.72 -3.52 16 2 C 0.04 1.36 5.55 86.30 0.48 1.84 16 3 N -0.55 -22.38 4.36 -900.79 -3.92 -26.31 16 4 C 0.17 8.20 3.66 85.56 0.31 8.51 16 5 C -0.51 -29.91 9.16 25.60 0.23 -29.68 16 6 H 0.03 2.28 7.89 -2.91 -0.02 2.26 16 7 C 0.01 0.37 5.47 84.66 0.46 0.83 16 8 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 9 Si 0.95 44.11 27.56 68.60 1.89 46.00 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.25 -10.76 6.41 99.48 0.64 -10.12 16 13 C 0.07 2.50 4.78 86.31 0.41 2.91 16 14 C -0.10 -2.97 5.56 30.60 0.17 -2.80 16 15 C 0.07 1.65 5.81 71.98 0.42 2.07 16 16 O -0.39 -9.54 10.08 -148.98 -1.50 -11.04 16 17 C 0.05 0.99 3.45 31.86 0.11 1.10 16 18 H 0.10 1.50 7.89 -2.39 -0.02 1.48 16 19 C -0.15 -2.21 6.89 32.06 0.22 -1.98 16 20 C 0.05 0.68 7.78 72.65 0.57 1.24 16 21 O -0.40 -9.22 11.36 -148.98 -1.69 -10.91 16 22 C 0.02 0.53 7.58 72.45 0.55 1.08 16 23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.23 6.89 -2.38 -0.02 1.21 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 2.40 5.88 -2.38 -0.01 2.39 16 27 H 0.03 0.91 8.00 -2.39 -0.02 0.89 16 28 H -0.01 -0.65 7.66 -2.39 -0.02 -0.66 16 29 H 0.03 1.57 5.29 -2.39 -0.01 1.55 16 30 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 31 H 0.05 2.27 7.31 -2.38 -0.02 2.25 16 32 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 33 H 0.08 2.12 6.25 -2.39 -0.01 2.10 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.07 1.43 8.11 -2.39 -0.02 1.41 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.63 8.05 -2.39 -0.02 1.61 16 42 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -69.20 332.51 0.62 -68.58 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.89 Total: 11.70 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.65 Total: -18.41 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.62 Total: -85.92 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -3.19 Total: -21.95 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.89 Total: 46.00 kcal Total: -69.20 0.62 -68.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687723109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.964 kcal (2) G-P(sol) polarization free energy of solvation -69.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds