Wall clock time and date at job start Mon Mar 30 2020 04:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.45453 * 2 1 4 4 C 1.53035 * 109.46199 * 119.97719 * 2 1 3 5 5 C 1.53116 * 109.27708 * 179.19353 * 4 2 1 6 6 C 1.53113 * 109.16147 * 302.34359 * 5 4 2 7 7 C 1.53039 * 109.27744 * 57.65503 * 6 5 4 8 8 H 1.08995 * 109.46102 * 60.84223 * 7 6 5 9 9 C 1.53009 * 109.46126 * 180.80414 * 7 6 5 10 10 O 1.42898 * 109.46891 * 56.63339 * 9 7 6 11 11 N 1.46839 * 109.52152 * 300.82058 * 7 6 5 12 12 C 1.46911 * 110.99711 * 185.84021 * 11 7 6 13 13 C 1.52995 * 109.46818 * 293.44723 * 12 11 7 14 14 O 1.42902 * 109.47390 * 66.97577 * 13 12 11 15 15 C 1.42891 * 114.00001 * 174.95705 * 14 13 12 16 16 C 1.50710 * 109.46965 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99595 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99777 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00195 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99672 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47052 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47142 * 119.99575 * 20 18 16 23 23 H 1.48496 * 109.47113 * 239.99742 * 20 18 16 24 24 H 1.08995 * 109.47135 * 181.32579 * 1 2 3 25 25 H 1.09002 * 109.46672 * 301.32673 * 1 2 3 26 26 H 1.09000 * 109.46847 * 61.31902 * 1 2 3 27 27 H 1.09000 * 109.50719 * 59.24742 * 4 2 1 28 28 H 1.09007 * 109.50288 * 299.13093 * 4 2 1 29 29 H 1.09005 * 109.52287 * 182.43833 * 5 4 2 30 30 H 1.08999 * 109.52588 * 62.25009 * 5 4 2 31 31 H 1.09001 * 109.50351 * 297.71334 * 6 5 4 32 32 H 1.08999 * 109.53855 * 177.61491 * 6 5 4 33 33 H 1.08996 * 109.46971 * 176.63026 * 9 7 6 34 34 H 1.08997 * 109.46887 * 296.63417 * 9 7 6 35 35 H 0.96702 * 114.00045 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46951 * 173.44949 * 12 11 7 37 37 H 1.08994 * 109.47000 * 53.44642 * 12 11 7 38 38 H 1.08996 * 109.47364 * 306.97175 * 13 12 11 39 39 H 1.09007 * 109.47090 * 186.97026 * 13 12 11 40 40 H 1.08998 * 109.47602 * 59.99671 * 15 14 13 41 41 H 1.08995 * 109.47329 * 299.99267 * 15 14 13 42 42 H 0.97004 * 119.99882 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7361 1.2355 6 6 4.0547 -1.4188 -0.0468 7 6 3.4864 -0.6777 -1.2591 8 1 3.8404 0.3532 -1.2532 9 6 3.9510 -1.3685 -2.5429 10 8 3.5553 -2.7413 -2.5150 11 7 2.0193 -0.6917 -1.1994 12 6 1.4373 -0.1104 -2.4166 13 6 1.7738 1.3806 -2.4809 14 8 3.1811 1.5438 -2.6679 15 6 3.5891 2.9003 -2.8555 16 6 5.0838 2.9542 -3.0414 17 1 5.6639 2.0436 -3.0181 18 6 5.7103 4.1660 -3.2411 19 7 5.0037 5.2748 -3.2700 20 14 7.5630 4.2329 -3.4708 21 1 8.1209 2.8587 -3.3961 22 1 7.8764 4.8235 -4.7967 23 1 8.1644 5.0696 -2.4015 24 1 -0.3633 -1.0273 0.0238 25 1 -0.3633 0.5343 0.8779 26 1 -0.3633 0.4932 -0.9016 27 1 1.6659 -1.7447 1.2576 28 1 1.6896 -0.1982 2.1399 29 1 3.9380 -1.2864 2.1019 30 1 3.9457 0.2869 1.2671 31 1 3.7124 -2.4536 -0.0596 32 1 5.1438 -1.3954 -0.0837 33 1 3.4983 -0.8773 -3.4041 34 1 5.0366 -1.3048 -2.6173 35 1 3.8177 -3.2424 -3.2993 36 1 0.3550 -0.2382 -2.3986 37 1 1.8480 -0.6137 -3.2918 38 1 1.4728 1.8616 -1.5502 39 1 1.2411 1.8377 -3.3149 40 1 3.3107 3.4878 -1.9807 41 1 3.0980 3.3086 -3.7387 42 1 4.0416 5.2400 -3.1512 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:29 Heat of formation + Delta-G solvation = -104.958138 kcal Electronic energy + Delta-G solvation = -21136.189172 eV Core-core repulsion = 18115.848828 eV Total energy + Delta-G solvation = -3020.340344 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78301 -36.74726 -36.16185 -33.81432 -32.85821 -32.31611 -28.84129 -27.28899 -26.35178 -25.61312 -23.29354 -22.57254 -20.88633 -20.62001 -18.98999 -17.05411 -16.92176 -16.19133 -16.02249 -15.16059 -14.71185 -14.26367 -14.01964 -13.84910 -13.76710 -13.38135 -12.79376 -12.77612 -12.39489 -12.12701 -12.03619 -11.73119 -11.58112 -11.48769 -11.22030 -11.15965 -10.83007 -10.63011 -10.44454 -10.38540 -10.17854 -9.98357 -9.88976 -9.45105 -8.87138 -8.69642 -8.30559 -7.73767 -6.52490 -4.21980 3.37898 3.41879 3.56183 4.11803 4.38763 4.68151 4.75689 4.95512 5.01608 5.16688 5.25472 5.31907 5.48407 5.54710 5.56948 5.61512 5.73621 5.75978 5.80203 5.83394 5.93323 6.02137 6.06177 6.09425 6.16055 6.23341 6.26636 6.35695 6.39314 6.47192 6.51602 6.70182 6.85166 7.05846 7.48588 7.51988 7.80534 7.98238 8.10356 8.55693 8.73093 9.49077 10.87594 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.006285 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.598823 B = 4454.211660 C = 4733.690259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 H 0.044 0.956 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.107 4.107 7 C 0.083 3.917 8 H 0.093 0.907 9 C 0.087 3.913 10 O -0.565 6.565 11 N -0.512 5.512 12 C 0.051 3.949 13 C 0.018 3.982 14 O -0.379 6.379 15 C 0.184 3.816 16 C -0.595 4.595 17 H 0.060 0.940 18 C 0.017 3.983 19 N -0.911 5.911 20 Si 1.082 2.918 21 H -0.287 1.287 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.365 0.635 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.038 0.962 40 H -0.008 1.008 41 H -0.006 1.006 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 -12.704 5.158 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.062 0.938 4 C -0.144 4.144 5 C -0.161 4.161 6 C -0.145 4.145 7 C -0.025 4.025 8 H 0.111 0.889 9 C 0.009 3.991 10 O -0.369 6.369 11 N -0.237 5.237 12 C -0.077 4.077 13 C -0.061 4.061 14 O -0.299 6.299 15 C 0.110 3.890 16 C -0.633 4.633 17 H 0.079 0.921 18 C -0.186 4.186 19 N -0.547 5.547 20 Si 0.909 3.091 21 H -0.212 1.212 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.210 0.790 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.010 0.990 41 H 0.011 0.989 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.211 -12.133 5.527 14.315 hybrid contribution -1.097 0.137 -0.419 1.183 sum -6.308 -11.996 5.107 14.484 Atomic orbital electron populations 1.21905 0.94901 1.02126 1.01408 1.21632 0.94809 0.96183 0.90830 0.93766 1.21573 0.95677 1.00920 0.96242 1.21597 0.95716 1.00872 0.97876 1.21522 0.99269 1.00317 0.93364 1.21925 0.87168 0.99882 0.93500 0.88928 1.22259 0.97517 0.81289 0.98037 1.86563 1.82495 1.22457 1.45340 1.62153 1.07406 1.53157 1.00961 1.22397 0.99646 0.91439 0.94198 1.23157 0.85761 0.97980 0.99196 1.87921 1.19253 1.29973 1.92735 1.20288 0.96469 0.78607 0.93672 1.21913 0.91010 0.96203 1.54174 0.92142 1.25919 1.07409 0.91534 0.93742 1.70743 1.08712 1.28954 1.46296 0.83366 0.73302 0.75367 0.77053 1.21246 1.21125 1.21132 0.91977 0.92641 0.92582 0.91418 0.92196 0.92290 0.92205 0.90918 0.92230 0.92625 0.93836 0.79010 0.89894 0.89867 0.94190 0.94386 0.99035 0.98875 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.74 37.16 0.32 -1.45 16 2 C 0.07 1.08 1.83 -67.72 -0.12 0.96 16 3 H 0.04 0.75 6.45 -51.93 -0.33 0.42 16 4 C -0.11 -1.40 5.37 -26.65 -0.14 -1.55 16 5 C -0.12 -1.71 6.00 -26.61 -0.16 -1.87 16 6 C -0.11 -1.64 5.20 -26.65 -0.14 -1.78 16 7 C 0.08 1.42 1.58 -67.72 -0.11 1.31 16 8 H 0.09 1.93 5.65 -51.93 -0.29 1.63 16 9 C 0.09 1.41 5.95 37.16 0.22 1.63 16 10 O -0.56 -8.23 12.76 -35.23 -0.45 -8.68 16 11 N -0.51 -8.12 4.45 -218.76 -0.97 -9.09 16 12 C 0.05 0.80 5.03 -3.82 -0.02 0.78 16 13 C 0.02 0.33 5.58 37.15 0.21 0.54 16 14 O -0.38 -8.63 6.44 -35.23 -0.23 -8.85 16 15 C 0.18 4.90 5.00 36.01 0.18 5.08 16 16 C -0.59 -17.21 9.43 -34.43 -0.32 -17.54 16 17 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 19 N -0.91 -27.75 13.65 55.43 0.76 -26.99 16 20 Si 1.08 25.29 29.90 -169.99 -5.08 20.20 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.68 6.11 -51.93 -0.32 0.36 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.14 7.57 -51.93 -0.39 0.75 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.96 5.50 -51.93 -0.29 0.68 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.37 3.69 9.12 45.56 0.42 4.10 16 36 H 0.08 1.12 6.33 -51.93 -0.33 0.80 16 37 H 0.08 1.34 5.76 -51.93 -0.30 1.04 16 38 H 0.04 0.73 6.00 -51.93 -0.31 0.42 16 39 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 40 H -0.01 -0.22 8.01 -51.93 -0.42 -0.64 16 41 H -0.01 -0.18 8.01 -51.93 -0.42 -0.59 16 42 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 LS Contribution 316.51 15.07 4.77 4.77 Total: -1.00 -31.43 316.51 -7.67 -39.10 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.28 Total: 3.02 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -0.18 Total: -13.48 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.22 Total: -36.08 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.68 Total: -17.53 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.43 -7.67 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.859 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds