Wall clock time and date at job start Mon Mar 30 2020 04:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.45453 * 2 1 4 4 C 1.53035 * 109.46199 * 119.97719 * 2 1 3 5 5 C 1.53116 * 109.27708 * 179.19353 * 4 2 1 6 6 C 1.53113 * 109.16147 * 302.34359 * 5 4 2 7 7 C 1.53039 * 109.27744 * 57.65503 * 6 5 4 8 8 H 1.08995 * 109.46102 * 60.84223 * 7 6 5 9 9 C 1.53009 * 109.46126 * 180.80414 * 7 6 5 10 10 O 1.42898 * 109.46891 * 56.63339 * 9 7 6 11 11 N 1.46839 * 109.52152 * 300.82058 * 7 6 5 12 12 C 1.46911 * 110.99711 * 185.84021 * 11 7 6 13 13 C 1.52995 * 109.46818 * 293.44723 * 12 11 7 14 14 O 1.42902 * 109.47390 * 66.97577 * 13 12 11 15 15 C 1.42891 * 114.00001 * 174.95705 * 14 13 12 16 16 C 1.50710 * 109.46965 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99595 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99777 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00195 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99672 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47052 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47142 * 119.99575 * 20 18 16 23 23 H 1.48496 * 109.47113 * 239.99742 * 20 18 16 24 24 H 1.08995 * 109.47135 * 181.32579 * 1 2 3 25 25 H 1.09002 * 109.46672 * 301.32673 * 1 2 3 26 26 H 1.09000 * 109.46847 * 61.31902 * 1 2 3 27 27 H 1.09000 * 109.50719 * 59.24742 * 4 2 1 28 28 H 1.09007 * 109.50288 * 299.13093 * 4 2 1 29 29 H 1.09005 * 109.52287 * 182.43833 * 5 4 2 30 30 H 1.08999 * 109.52588 * 62.25009 * 5 4 2 31 31 H 1.09001 * 109.50351 * 297.71334 * 6 5 4 32 32 H 1.08999 * 109.53855 * 177.61491 * 6 5 4 33 33 H 1.08996 * 109.46971 * 176.63026 * 9 7 6 34 34 H 1.08997 * 109.46887 * 296.63417 * 9 7 6 35 35 H 0.96702 * 114.00045 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46951 * 173.44949 * 12 11 7 37 37 H 1.08994 * 109.47000 * 53.44642 * 12 11 7 38 38 H 1.08996 * 109.47364 * 306.97175 * 13 12 11 39 39 H 1.09007 * 109.47090 * 186.97026 * 13 12 11 40 40 H 1.08998 * 109.47602 * 59.99671 * 15 14 13 41 41 H 1.08995 * 109.47329 * 299.99267 * 15 14 13 42 42 H 0.97004 * 119.99882 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7361 1.2355 6 6 4.0547 -1.4188 -0.0468 7 6 3.4864 -0.6777 -1.2591 8 1 3.8404 0.3532 -1.2532 9 6 3.9510 -1.3685 -2.5429 10 8 3.5553 -2.7413 -2.5150 11 7 2.0193 -0.6917 -1.1994 12 6 1.4373 -0.1104 -2.4166 13 6 1.7738 1.3806 -2.4809 14 8 3.1811 1.5438 -2.6679 15 6 3.5891 2.9003 -2.8555 16 6 5.0838 2.9542 -3.0414 17 1 5.6639 2.0436 -3.0181 18 6 5.7103 4.1660 -3.2411 19 7 5.0037 5.2748 -3.2700 20 14 7.5630 4.2329 -3.4708 21 1 8.1209 2.8587 -3.3961 22 1 7.8764 4.8235 -4.7967 23 1 8.1644 5.0696 -2.4015 24 1 -0.3633 -1.0273 0.0238 25 1 -0.3633 0.5343 0.8779 26 1 -0.3633 0.4932 -0.9016 27 1 1.6659 -1.7447 1.2576 28 1 1.6896 -0.1982 2.1399 29 1 3.9380 -1.2864 2.1019 30 1 3.9457 0.2869 1.2671 31 1 3.7124 -2.4536 -0.0596 32 1 5.1438 -1.3954 -0.0837 33 1 3.4983 -0.8773 -3.4041 34 1 5.0366 -1.3048 -2.6173 35 1 3.8177 -3.2424 -3.2993 36 1 0.3550 -0.2382 -2.3986 37 1 1.8480 -0.6137 -3.2918 38 1 1.4728 1.8616 -1.5502 39 1 1.2411 1.8377 -3.3149 40 1 3.3107 3.4878 -1.9807 41 1 3.0980 3.3086 -3.7387 42 1 4.0416 5.2400 -3.1512 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:28 Heat of formation + Delta-G solvation = -128.071237 kcal Electronic energy + Delta-G solvation = -21137.191432 eV Core-core repulsion = 18115.848828 eV Total energy + Delta-G solvation = -3021.342603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08581 -38.48987 -37.36433 -35.49981 -34.64736 -33.52310 -30.32435 -28.77098 -28.08263 -26.83571 -24.89792 -24.53892 -22.10269 -21.86081 -20.32591 -19.16610 -18.17246 -17.74355 -17.47846 -16.66180 -16.21253 -15.79232 -15.53095 -15.41292 -15.19046 -14.72362 -14.22123 -14.19616 -13.93058 -13.75888 -13.41039 -13.15301 -12.87426 -12.75198 -12.67462 -12.60662 -12.39040 -12.27626 -11.95387 -11.84142 -11.60802 -11.14806 -11.08844 -10.90909 -10.86036 -10.66822 -10.31519 -9.11250 -8.86134 -6.57776 1.48896 1.58401 1.76736 2.44457 2.80028 3.00296 3.10749 3.51807 3.80231 3.89549 3.94910 4.03673 4.15240 4.24886 4.29200 4.37708 4.43547 4.44298 4.54053 4.58694 4.64282 4.65660 4.81658 4.85261 4.91812 4.96457 4.97151 5.05801 5.09324 5.13068 5.24846 5.29648 5.34490 5.56865 5.63501 5.88026 6.19551 6.25164 6.29940 6.57930 6.98480 7.23298 8.54207 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.006285 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.598823 B = 4454.211660 C = 4733.690259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.068 3.932 3 H 0.014 0.986 4 C -0.102 4.102 5 C -0.123 4.123 6 C -0.101 4.101 7 C 0.081 3.919 8 H 0.051 0.949 9 C 0.096 3.904 10 O -0.567 6.567 11 N -0.506 5.506 12 C 0.058 3.942 13 C 0.014 3.986 14 O -0.382 6.382 15 C 0.197 3.803 16 C -0.614 4.614 17 H 0.055 0.945 18 C -0.029 4.029 19 N -0.930 5.930 20 Si 1.129 2.871 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.274 1.274 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.386 0.614 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.043 0.957 40 H -0.027 1.027 41 H -0.022 1.022 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 -14.278 5.726 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.040 4.040 3 H 0.032 0.968 4 C -0.139 4.139 5 C -0.160 4.160 6 C -0.139 4.139 7 C -0.027 4.027 8 H 0.069 0.931 9 C 0.017 3.983 10 O -0.374 6.374 11 N -0.230 5.230 12 C -0.070 4.070 13 C -0.065 4.065 14 O -0.301 6.301 15 C 0.122 3.878 16 C -0.652 4.652 17 H 0.073 0.927 18 C -0.227 4.227 19 N -0.567 5.567 20 Si 0.948 3.052 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.199 1.199 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.234 0.766 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.061 0.939 40 H -0.010 1.010 41 H -0.004 1.004 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.360 -13.738 6.089 15.955 hybrid contribution -1.148 0.563 -0.587 1.406 sum -6.507 -13.176 5.503 15.692 Atomic orbital electron populations 1.21867 0.92650 1.03034 1.02167 1.21766 0.96627 0.94565 0.91030 0.96840 1.21570 0.94867 1.01401 0.96102 1.21608 0.96544 0.99861 0.98031 1.21471 0.99111 1.00112 0.93238 1.21810 0.88110 0.97909 0.94903 0.93122 1.22014 0.96986 0.82204 0.97055 1.86501 1.82502 1.21435 1.46933 1.62241 1.06498 1.52864 1.01444 1.22458 1.01290 0.88946 0.94278 1.23435 0.83387 1.00403 0.99270 1.87944 1.22154 1.27298 1.92705 1.19913 0.95625 0.80335 0.91967 1.22232 0.92232 0.96324 1.54387 0.92667 1.27557 1.11790 0.90950 0.92376 1.70873 1.08187 1.29781 1.47843 0.82804 0.67882 0.76601 0.77884 1.19408 1.19724 1.19897 0.90893 0.91127 0.92680 0.90501 0.90409 0.90030 0.94152 0.90663 0.92444 0.93999 0.94372 0.76578 0.86964 0.90153 0.94277 0.93917 1.00984 1.00449 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.74 71.98 0.63 -2.45 16 2 C 0.07 1.93 1.83 44.94 0.08 2.01 16 3 H 0.01 0.47 6.45 -2.39 -0.02 0.46 16 4 C -0.10 -2.49 5.37 30.64 0.16 -2.32 16 5 C -0.12 -3.29 6.00 30.67 0.18 -3.11 16 6 C -0.10 -3.04 5.20 30.64 0.16 -2.88 16 7 C 0.08 2.78 1.58 44.94 0.07 2.85 16 8 H 0.05 2.20 5.65 -2.39 -0.01 2.19 16 9 C 0.10 3.09 5.95 71.99 0.43 3.52 16 10 O -0.57 -15.59 12.76 -148.98 -1.90 -17.49 16 11 N -0.51 -15.57 4.45 -846.02 -3.77 -19.33 16 12 C 0.06 1.78 5.03 86.30 0.43 2.21 16 13 C 0.01 0.50 5.58 71.98 0.40 0.91 16 14 O -0.38 -17.96 6.44 -148.98 -0.96 -18.92 16 15 C 0.20 10.91 5.00 71.24 0.36 11.27 16 16 C -0.61 -36.41 9.43 25.60 0.24 -36.17 16 17 H 0.05 3.26 7.81 -2.91 -0.02 3.24 16 18 C -0.03 -1.71 5.46 84.66 0.46 -1.25 16 19 N -0.93 -57.63 13.65 21.45 0.29 -57.33 16 20 Si 1.13 50.35 29.90 68.60 2.05 52.40 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.21 6.11 -2.39 -0.01 1.20 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.07 2.23 7.57 -2.39 -0.02 2.21 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.46 5.50 -2.39 -0.01 1.45 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.39 7.03 9.12 -74.06 -0.68 6.36 16 36 H 0.11 2.79 6.33 -2.39 -0.02 2.77 16 37 H 0.08 2.52 5.76 -2.39 -0.01 2.51 16 38 H 0.04 1.47 6.00 -2.39 -0.01 1.46 16 39 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 40 H -0.03 -1.60 8.01 -2.39 -0.02 -1.62 16 41 H -0.02 -1.27 8.01 -2.39 -0.02 -1.29 16 42 H 0.25 16.01 7.22 -92.71 -0.67 15.34 16 Total: -1.00 -68.24 316.51 -0.25 -68.49 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.42 Total: 17.60 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 3.61 Total: -25.41 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -3.48 Total: -76.67 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -2.86 Total: -36.41 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.40 kcal Total: -68.24 -0.25 -68.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.586 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds