Wall clock time and date at job start Mon Mar 30 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.44939 * 2 1 4 4 C 1.53034 * 109.46115 * 240.02560 * 2 1 3 5 5 C 1.53116 * 109.30715 * 180.82693 * 4 2 1 6 6 C 1.53116 * 109.16417 * 57.63539 * 5 4 2 7 7 C 1.53031 * 109.27842 * 302.34542 * 6 5 4 8 8 H 1.09003 * 109.46132 * 299.17725 * 7 6 5 9 9 C 1.53004 * 109.46345 * 179.19511 * 7 6 5 10 10 O 1.42897 * 109.46802 * 303.91713 * 9 7 6 11 11 N 1.46846 * 109.49251 * 119.95253 * 2 1 3 12 12 C 1.46892 * 110.99987 * 305.83660 * 11 2 1 13 13 C 1.52999 * 109.47436 * 289.29638 * 12 11 2 14 14 O 1.42899 * 109.47158 * 66.92476 * 13 12 11 15 15 C 1.42896 * 114.00152 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47106 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00277 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00391 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99483 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47171 * 90.00465 * 20 18 16 22 22 H 1.48499 * 109.46980 * 209.99821 * 20 18 16 23 23 H 1.48496 * 109.47723 * 329.99854 * 20 18 16 24 24 H 1.09004 * 109.47381 * 179.01224 * 1 2 3 25 25 H 1.09007 * 109.47271 * 299.01321 * 1 2 3 26 26 H 1.08998 * 109.47318 * 59.01513 * 1 2 3 27 27 H 1.09000 * 109.50728 * 60.86394 * 4 2 1 28 28 H 1.09003 * 109.50441 * 300.78705 * 4 2 1 29 29 H 1.09008 * 109.52136 * 177.53864 * 5 4 2 30 30 H 1.09003 * 109.52464 * 297.72589 * 5 4 2 31 31 H 1.08998 * 109.50309 * 62.28598 * 6 5 4 32 32 H 1.08998 * 109.50157 * 182.40418 * 6 5 4 33 33 H 1.09001 * 109.47043 * 63.92142 * 9 7 6 34 34 H 1.09003 * 109.46787 * 183.91589 * 9 7 6 35 35 H 0.96700 * 113.99217 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47274 * 49.29560 * 12 11 2 37 37 H 1.09007 * 109.47654 * 169.29445 * 12 11 2 38 38 H 1.08994 * 109.47672 * 186.92909 * 13 12 11 39 39 H 1.09006 * 109.46745 * 306.93080 * 13 12 11 40 40 H 1.08999 * 109.47781 * 300.00156 * 15 14 13 41 41 H 1.09002 * 109.47226 * 60.00519 * 15 14 13 42 42 H 0.96995 * 119.99653 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7369 -1.2360 6 6 4.0548 -1.4197 0.0463 7 6 3.4873 -0.6780 1.2586 8 1 3.8415 0.3528 1.2522 9 6 3.9519 -1.3689 2.5423 10 8 3.5666 -2.7445 2.5091 11 7 2.0200 -0.6912 1.1994 12 6 1.4388 -0.1094 2.4166 13 6 2.0346 1.2799 2.6527 14 8 1.6056 2.1646 1.6158 15 6 2.1094 3.4959 1.7423 16 6 1.5960 4.3376 0.6026 17 1 0.9494 3.8999 -0.1435 18 6 1.9519 5.6667 0.5122 19 7 1.5035 6.4014 -0.4821 20 14 3.0709 6.4236 1.8023 21 1 4.4865 6.2727 1.3797 22 1 2.7500 7.8658 1.9512 23 1 2.8660 5.7342 3.1015 24 1 -0.3634 -1.0275 -0.0177 25 1 -0.3634 0.4985 0.8987 26 1 -0.3634 0.5290 -0.8810 27 1 1.6895 -0.1982 -2.1399 28 1 1.6653 -1.7445 -1.2579 29 1 3.9373 -1.2877 -2.1024 30 1 3.9462 0.2859 -1.2680 31 1 3.7119 -2.4542 0.0594 32 1 5.1439 -1.3961 0.0823 33 1 5.0367 -1.2971 2.6213 34 1 3.4921 -0.8833 3.4031 35 1 3.8297 -3.2456 3.2932 36 1 0.3584 -0.0262 2.2994 37 1 1.6634 -0.7507 3.2690 38 1 1.6985 1.6603 3.6171 39 1 3.1227 1.2142 2.6472 40 1 1.7751 3.9226 2.6879 41 1 3.1990 3.4760 1.7176 42 1 1.7542 7.3363 -0.5458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:31 Heat of formation + Delta-G solvation = -95.178565 kcal Electronic energy + Delta-G solvation = -21082.692858 eV Core-core repulsion = 18062.776588 eV Total energy + Delta-G solvation = -3019.916270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80673 -36.86696 -36.26397 -33.68013 -32.56030 -32.40947 -29.06750 -27.69576 -26.87078 -25.80058 -23.23858 -21.91236 -20.87308 -20.63019 -18.97976 -17.32093 -16.87824 -16.14823 -15.97738 -15.27612 -14.66314 -14.38461 -14.31590 -14.04815 -13.68232 -13.31524 -12.92908 -12.79443 -12.52523 -12.22873 -11.92072 -11.69566 -11.48319 -11.36491 -11.26135 -10.92624 -10.91616 -10.79113 -10.49693 -10.32398 -10.03947 -9.94793 -9.84818 -9.69211 -9.22991 -8.87102 -8.51273 -7.70292 -6.15698 -4.14802 3.19985 3.27617 3.28430 4.10460 4.31114 4.35942 4.65542 4.93668 4.98552 5.15627 5.20811 5.29639 5.42036 5.45504 5.54019 5.55571 5.67257 5.72368 5.81859 5.90164 5.98308 6.04783 6.10711 6.17220 6.23732 6.27724 6.30915 6.38938 6.50673 6.57553 6.61511 6.73428 6.91351 6.97148 7.49798 7.54096 7.57392 7.69175 7.95065 8.60524 8.95461 9.43680 10.97162 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023223 B = 0.006223 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.408293 B = 4498.134296 C = 4820.362502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.071 3.929 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.102 4.102 7 C 0.081 3.919 8 H 0.058 0.942 9 C 0.081 3.919 10 O -0.554 6.554 11 N -0.512 5.512 12 C 0.050 3.950 13 C 0.016 3.984 14 O -0.369 6.369 15 C 0.167 3.833 16 C -0.517 4.517 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.874 3.126 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.268 1.268 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.368 0.632 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.001 0.999 41 H -0.006 1.006 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 -16.051 5.501 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.036 4.036 3 H 0.102 0.898 4 C -0.147 4.147 5 C -0.161 4.161 6 C -0.140 4.140 7 C -0.027 4.027 8 H 0.076 0.924 9 C 0.002 3.998 10 O -0.357 6.357 11 N -0.237 5.237 12 C -0.079 4.079 13 C -0.063 4.063 14 O -0.288 6.288 15 C 0.091 3.909 16 C -0.555 4.555 17 H 0.101 0.899 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.701 3.299 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.192 1.192 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.213 0.787 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.012 0.988 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.226 -16.216 4.633 17.386 hybrid contribution 1.383 1.496 1.578 2.577 sum 5.609 -14.720 6.211 16.933 Atomic orbital electron populations 1.21792 0.94769 1.00550 1.02270 1.21843 0.95373 0.97938 0.88466 0.89808 1.21618 0.94969 1.00692 0.97457 1.21599 0.96504 1.00722 0.97260 1.21460 0.98674 1.00589 0.93287 1.21707 0.89287 0.97464 0.94291 0.92434 1.22309 0.97159 0.82756 0.97547 1.86629 1.82659 1.21206 1.45226 1.62141 1.05329 1.54124 1.02058 1.22408 1.01096 0.91066 0.93290 1.23198 0.98107 0.92561 0.92405 1.87983 1.73134 1.21495 1.46232 1.20600 0.92922 0.79879 0.97461 1.20857 1.31245 0.93952 1.09415 0.89913 1.24759 0.95904 0.96644 0.95566 1.69870 1.44846 1.07799 1.30689 0.86882 0.81467 0.78995 0.82572 1.20018 1.20737 1.19236 0.93381 0.91906 0.92571 0.91871 0.91972 0.92335 0.92067 0.90520 0.92524 0.93899 0.93587 0.78701 0.89324 0.90169 0.94307 0.94406 0.98121 0.98809 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.73 37.16 0.32 -1.89 16 2 C 0.07 1.20 1.82 -67.72 -0.12 1.08 16 3 H 0.08 1.74 5.70 -51.93 -0.30 1.44 16 4 C -0.11 -1.64 5.37 -26.65 -0.14 -1.78 16 5 C -0.12 -1.73 6.00 -26.61 -0.16 -1.89 16 6 C -0.10 -1.38 5.20 -26.66 -0.14 -1.52 16 7 C 0.08 1.17 1.60 -67.72 -0.11 1.06 16 8 H 0.06 0.94 6.42 -51.93 -0.33 0.61 16 9 C 0.08 0.94 6.04 37.16 0.22 1.16 16 10 O -0.55 -6.33 12.74 -35.23 -0.45 -6.78 16 11 N -0.51 -7.92 4.46 -218.76 -0.98 -8.89 16 12 C 0.05 0.74 5.05 -3.83 -0.02 0.72 16 13 C 0.02 0.28 5.42 37.16 0.20 0.48 16 14 O -0.37 -8.15 7.06 -35.23 -0.25 -8.40 16 15 C 0.17 4.15 4.76 36.01 0.17 4.32 16 16 C -0.52 -15.06 9.99 -34.44 -0.34 -15.40 16 17 H 0.08 2.63 8.06 -52.48 -0.42 2.21 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 20 Si 0.87 21.32 27.47 -169.99 -4.67 16.66 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.28 6.54 56.52 0.37 -5.92 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.07 5.87 -51.93 -0.30 0.77 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.09 7.56 -51.93 -0.39 0.70 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.52 5.80 -51.93 -0.30 0.21 16 35 H 0.37 2.47 9.12 45.56 0.42 2.88 16 36 H 0.09 1.37 5.60 -51.93 -0.29 1.08 16 37 H 0.08 1.05 6.53 -51.92 -0.34 0.71 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.63 5.64 -51.93 -0.29 0.34 16 40 H 0.00 0.03 7.20 -51.93 -0.37 -0.35 16 41 H -0.01 -0.14 7.57 -51.93 -0.39 -0.53 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -31.56 314.54 -7.34 -38.90 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.30 Total: 1.94 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -0.21 Total: -11.61 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.20 Total: -35.45 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.70 Total: -15.18 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.56 -7.34 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.277 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds