Wall clock time and date at job start Mon Mar 30 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.44939 * 2 1 4 4 C 1.53034 * 109.46115 * 240.02560 * 2 1 3 5 5 C 1.53116 * 109.30715 * 180.82693 * 4 2 1 6 6 C 1.53116 * 109.16417 * 57.63539 * 5 4 2 7 7 C 1.53031 * 109.27842 * 302.34542 * 6 5 4 8 8 H 1.09003 * 109.46132 * 299.17725 * 7 6 5 9 9 C 1.53004 * 109.46345 * 179.19511 * 7 6 5 10 10 O 1.42897 * 109.46802 * 303.91713 * 9 7 6 11 11 N 1.46846 * 109.49251 * 119.95253 * 2 1 3 12 12 C 1.46892 * 110.99987 * 305.83660 * 11 2 1 13 13 C 1.52999 * 109.47436 * 289.29638 * 12 11 2 14 14 O 1.42899 * 109.47158 * 66.92476 * 13 12 11 15 15 C 1.42896 * 114.00152 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47106 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00277 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00391 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99483 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47171 * 90.00465 * 20 18 16 22 22 H 1.48499 * 109.46980 * 209.99821 * 20 18 16 23 23 H 1.48496 * 109.47723 * 329.99854 * 20 18 16 24 24 H 1.09004 * 109.47381 * 179.01224 * 1 2 3 25 25 H 1.09007 * 109.47271 * 299.01321 * 1 2 3 26 26 H 1.08998 * 109.47318 * 59.01513 * 1 2 3 27 27 H 1.09000 * 109.50728 * 60.86394 * 4 2 1 28 28 H 1.09003 * 109.50441 * 300.78705 * 4 2 1 29 29 H 1.09008 * 109.52136 * 177.53864 * 5 4 2 30 30 H 1.09003 * 109.52464 * 297.72589 * 5 4 2 31 31 H 1.08998 * 109.50309 * 62.28598 * 6 5 4 32 32 H 1.08998 * 109.50157 * 182.40418 * 6 5 4 33 33 H 1.09001 * 109.47043 * 63.92142 * 9 7 6 34 34 H 1.09003 * 109.46787 * 183.91589 * 9 7 6 35 35 H 0.96700 * 113.99217 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47274 * 49.29560 * 12 11 2 37 37 H 1.09007 * 109.47654 * 169.29445 * 12 11 2 38 38 H 1.08994 * 109.47672 * 186.92909 * 13 12 11 39 39 H 1.09006 * 109.46745 * 306.93080 * 13 12 11 40 40 H 1.08999 * 109.47781 * 300.00156 * 15 14 13 41 41 H 1.09002 * 109.47226 * 60.00519 * 15 14 13 42 42 H 0.96995 * 119.99653 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7369 -1.2360 6 6 4.0548 -1.4197 0.0463 7 6 3.4873 -0.6780 1.2586 8 1 3.8415 0.3528 1.2522 9 6 3.9519 -1.3689 2.5423 10 8 3.5666 -2.7445 2.5091 11 7 2.0200 -0.6912 1.1994 12 6 1.4388 -0.1094 2.4166 13 6 2.0346 1.2799 2.6527 14 8 1.6056 2.1646 1.6158 15 6 2.1094 3.4959 1.7423 16 6 1.5960 4.3376 0.6026 17 1 0.9494 3.8999 -0.1435 18 6 1.9519 5.6667 0.5122 19 7 1.5035 6.4014 -0.4821 20 14 3.0709 6.4236 1.8023 21 1 4.4865 6.2727 1.3797 22 1 2.7500 7.8658 1.9512 23 1 2.8660 5.7342 3.1015 24 1 -0.3634 -1.0275 -0.0177 25 1 -0.3634 0.4985 0.8987 26 1 -0.3634 0.5290 -0.8810 27 1 1.6895 -0.1982 -2.1399 28 1 1.6653 -1.7445 -1.2579 29 1 3.9373 -1.2877 -2.1024 30 1 3.9462 0.2859 -1.2680 31 1 3.7119 -2.4542 0.0594 32 1 5.1439 -1.3961 0.0823 33 1 5.0367 -1.2971 2.6213 34 1 3.4921 -0.8833 3.4031 35 1 3.8297 -3.2456 3.2932 36 1 0.3584 -0.0262 2.2994 37 1 1.6634 -0.7507 3.2690 38 1 1.6985 1.6603 3.6171 39 1 3.1227 1.2142 2.6472 40 1 1.7751 3.9226 2.6879 41 1 3.1990 3.4760 1.7176 42 1 1.7542 7.3363 -0.5458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:31 Heat of formation + Delta-G solvation = -119.468577 kcal Electronic energy + Delta-G solvation = -21083.746152 eV Core-core repulsion = 18062.776588 eV Total energy + Delta-G solvation = -3020.969564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02923 -38.40428 -37.27011 -35.18494 -34.52049 -33.58917 -30.72755 -29.29705 -28.20535 -26.90441 -24.57184 -23.93989 -22.07956 -21.81952 -20.25448 -19.00714 -18.20689 -17.64077 -17.35251 -16.77971 -16.20281 -16.04530 -15.42255 -15.34336 -14.96852 -14.80518 -14.47683 -14.22060 -13.89284 -13.46003 -13.37032 -13.20804 -12.93458 -12.74397 -12.64766 -12.53866 -12.35802 -12.27958 -11.89017 -11.75229 -11.57374 -11.38020 -11.06884 -11.05152 -10.92512 -10.67825 -10.29203 -9.01559 -8.39579 -6.46818 1.28494 1.31029 1.41662 2.25202 2.85386 2.92815 3.16352 3.50756 3.85093 3.91490 4.01053 4.13953 4.25773 4.27548 4.37835 4.43417 4.50126 4.52526 4.57334 4.60066 4.67711 4.76726 4.82902 4.87329 4.94015 4.98267 5.03886 5.09798 5.11748 5.19026 5.30019 5.39199 5.40431 5.43816 5.62617 5.90715 6.26773 6.32657 6.57029 6.70860 7.07219 7.17301 8.77241 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023223 B = 0.006223 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.408293 B = 4498.134296 C = 4820.362502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.072 3.928 3 H 0.040 0.960 4 C -0.107 4.107 5 C -0.123 4.123 6 C -0.096 4.096 7 C 0.073 3.927 8 H 0.035 0.965 9 C 0.087 3.913 10 O -0.569 6.569 11 N -0.507 5.507 12 C 0.054 3.946 13 C 0.010 3.990 14 O -0.386 6.386 15 C 0.179 3.821 16 C -0.537 4.537 17 H 0.032 0.968 18 C 0.015 3.985 19 N -0.940 5.940 20 Si 0.951 3.049 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.248 1.248 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.390 0.610 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.007 0.993 41 H 0.002 0.998 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 -17.458 7.723 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.036 4.036 3 H 0.058 0.942 4 C -0.145 4.145 5 C -0.160 4.160 6 C -0.133 4.133 7 C -0.036 4.036 8 H 0.052 0.948 9 C 0.009 3.991 10 O -0.376 6.376 11 N -0.231 5.231 12 C -0.074 4.074 13 C -0.068 4.068 14 O -0.305 6.305 15 C 0.103 3.897 16 C -0.575 4.575 17 H 0.050 0.950 18 C -0.184 4.184 19 N -0.580 5.580 20 Si 0.772 3.228 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.172 1.172 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.239 0.761 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.915 -17.662 6.874 19.854 hybrid contribution 0.789 1.845 0.818 2.167 sum 6.704 -15.817 7.692 18.822 Atomic orbital electron populations 1.21729 0.94673 1.01276 1.01145 1.21716 0.95520 0.95985 0.90340 0.94208 1.21588 0.95867 1.00773 0.96270 1.21603 0.95641 0.99980 0.98825 1.21418 0.99600 0.99986 0.92321 1.21826 0.88329 0.96855 0.96542 0.94769 1.22176 0.98213 0.82907 0.95783 1.86564 1.82979 1.21032 1.47023 1.62206 1.06301 1.53139 1.01489 1.22483 1.00593 0.90170 0.94173 1.23494 0.98959 0.92709 0.91637 1.87998 1.73429 1.20727 1.48379 1.20268 0.92937 0.80955 0.95536 1.21089 1.31118 0.95233 1.10068 0.94997 1.25785 0.97525 0.96924 0.98123 1.70026 1.46450 1.08482 1.33010 0.85675 0.79147 0.78186 0.79744 1.18629 1.19779 1.17170 0.91519 0.93129 0.93677 0.92483 0.90890 0.90361 0.94108 0.90608 0.90896 0.92027 0.92933 0.76142 0.89983 0.87183 0.92979 0.93460 0.97504 0.98045 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 8.73 71.98 0.63 -3.73 16 2 C 0.07 2.49 1.82 44.94 0.08 2.58 16 3 H 0.04 1.75 5.70 -2.39 -0.01 1.74 16 4 C -0.11 -3.22 5.37 30.64 0.16 -3.06 16 5 C -0.12 -3.39 6.00 30.67 0.18 -3.20 16 6 C -0.10 -2.41 5.20 30.64 0.16 -2.25 16 7 C 0.07 1.98 1.60 44.94 0.07 2.06 16 8 H 0.03 1.10 6.42 -2.39 -0.02 1.09 16 9 C 0.09 1.76 6.04 71.98 0.43 2.20 16 10 O -0.57 -11.01 12.74 -148.98 -1.90 -12.90 16 11 N -0.51 -15.14 4.46 -846.04 -3.77 -18.91 16 12 C 0.05 1.53 5.05 86.30 0.44 1.97 16 13 C 0.01 0.34 5.42 71.98 0.39 0.73 16 14 O -0.39 -17.35 7.06 -148.98 -1.05 -18.40 16 15 C 0.18 8.94 4.76 71.24 0.34 9.28 16 16 C -0.54 -32.54 9.99 25.60 0.26 -32.28 16 17 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 18 C 0.01 0.86 5.47 84.66 0.46 1.32 16 19 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 20 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 24 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 25 H 0.05 1.78 5.87 -2.38 -0.01 1.77 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.96 7.56 -2.39 -0.02 1.94 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 0.99 5.80 -2.39 -0.01 0.97 16 35 H 0.39 3.73 9.12 -74.06 -0.68 3.06 16 36 H 0.08 2.46 5.60 -2.39 -0.01 2.45 16 37 H 0.11 2.51 6.53 -2.38 -0.02 2.50 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.50 5.64 -2.38 -0.01 1.49 16 40 H 0.01 0.35 7.20 -2.39 -0.02 0.33 16 41 H 0.00 0.09 7.57 -2.39 -0.02 0.07 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -70.33 314.54 -0.66 -70.99 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.27 Total: 17.04 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 3.61 Total: -24.39 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -3.47 Total: -77.81 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -2.95 Total: -31.30 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -70.33 -0.66 -70.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.474 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds