Wall clock time and date at job start Mon Mar 30 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 109.45289 * 2 1 4 4 C 1.53032 * 109.46405 * 240.03040 * 2 1 3 5 5 C 1.53122 * 109.27812 * 299.16409 * 4 2 1 6 6 C 1.53119 * 109.15740 * 302.34254 * 5 4 2 7 7 H 1.08996 * 109.50423 * 297.67468 * 6 5 4 8 8 C 1.53005 * 109.50401 * 177.59305 * 6 5 4 9 9 O 1.42900 * 109.46517 * 65.00114 * 8 6 5 10 10 C 1.53044 * 109.27695 * 57.65562 * 6 5 4 11 11 N 1.46839 * 109.46519 * 119.97264 * 2 1 3 12 12 C 1.46902 * 111.00274 * 294.17975 * 11 2 1 13 13 C 1.53000 * 109.47296 * 176.35474 * 12 11 2 14 14 O 1.42901 * 109.46875 * 62.28645 * 13 12 11 15 15 C 1.42900 * 114.00284 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47539 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99723 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99929 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00271 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99935 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47233 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.46867 * 300.00020 * 20 18 16 23 23 H 1.48495 * 109.47007 * 59.99936 * 20 18 16 24 24 H 1.09000 * 109.47405 * 300.02706 * 1 2 3 25 25 H 1.09008 * 109.47210 * 60.02152 * 1 2 3 26 26 H 1.08997 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.50671 * 59.10231 * 4 2 1 28 28 H 1.08999 * 109.50489 * 179.18087 * 4 2 1 29 29 H 1.08996 * 109.52257 * 62.24544 * 5 4 2 30 30 H 1.09001 * 109.52348 * 182.37904 * 5 4 2 31 31 H 1.08995 * 109.47211 * 185.00064 * 8 6 5 32 32 H 1.08999 * 109.46985 * 305.00816 * 8 6 5 33 33 H 0.96700 * 113.99705 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.46108 * 180.80413 * 10 6 5 35 35 H 1.08997 * 109.46222 * 60.83802 * 10 6 5 36 36 H 1.09004 * 109.47229 * 56.35610 * 12 11 2 37 37 H 1.09003 * 109.47008 * 296.35875 * 12 11 2 38 38 H 1.08999 * 109.47286 * 302.28732 * 13 12 11 39 39 H 1.08999 * 109.47039 * 182.28125 * 13 12 11 40 40 H 1.09004 * 109.46662 * 59.99625 * 15 14 13 41 41 H 1.09006 * 109.46945 * 300.00535 * 15 14 13 42 42 H 0.97002 * 119.99607 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0399 -0.7208 -1.2499 5 6 1.5443 -2.1695 -1.2357 6 6 2.0269 -2.8531 0.0466 7 1 3.1166 -2.8756 0.0590 8 6 1.4859 -4.2834 0.0977 9 8 2.0505 -5.0446 -0.9717 10 6 1.5174 -2.0704 1.2590 11 7 2.0193 -0.6917 1.1993 12 6 1.6651 0.0506 2.4165 13 6 2.1103 -0.7437 3.6460 14 8 3.5316 -0.8917 3.6285 15 6 4.0537 -1.6224 4.7399 16 6 5.5530 -1.7163 4.6199 17 1 6.0567 -1.2635 3.7786 18 6 6.2814 -2.3810 5.5834 19 7 5.6679 -2.9328 6.6075 20 14 8.1398 -2.4980 5.4342 21 1 8.6823 -3.2584 6.5886 22 1 8.4920 -3.1970 4.1722 23 1 8.7224 -1.1322 5.4227 24 1 -0.3634 0.5142 0.8897 25 1 -0.3634 0.5135 -0.8902 26 1 -0.3633 -1.0276 0.0005 27 1 1.6637 -0.2163 -2.1399 28 1 3.1298 -0.7084 -1.2580 29 1 0.4548 -2.1821 -1.2672 30 1 1.9400 -2.6984 -2.1027 31 1 1.7550 -4.7398 1.0502 32 1 0.4007 -4.2651 -0.0028 33 1 1.7515 -5.9638 -1.0008 34 1 1.8713 -2.5465 2.1735 35 1 0.4275 -2.0608 1.2531 36 1 0.5857 0.1984 2.4508 37 1 2.1644 1.0195 2.4095 38 1 1.6424 -1.7281 3.6317 39 1 1.8115 -0.2124 4.5496 40 1 3.6260 -2.6250 4.7488 41 1 3.7951 -1.1090 5.6661 42 1 6.1805 -3.4008 7.2852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:46 Heat of formation + Delta-G solvation = -103.008665 kcal Electronic energy + Delta-G solvation = -20304.967566 eV Core-core repulsion = 17284.711757 eV Total energy + Delta-G solvation = -3020.255809 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85071 -37.04342 -36.41308 -33.64932 -32.63620 -32.19185 -28.90248 -27.76315 -26.66972 -25.24520 -23.95277 -22.25367 -21.28735 -20.76931 -18.61945 -17.24051 -16.43176 -16.31742 -15.60455 -15.05575 -14.98572 -14.60491 -14.53239 -14.21096 -13.79917 -13.26339 -13.12075 -12.78960 -12.60305 -12.50528 -12.25609 -11.92997 -11.59156 -11.26585 -11.13697 -10.94440 -10.79416 -10.70110 -10.62157 -10.36331 -10.15864 -10.13447 -9.93871 -9.75957 -9.04600 -8.73988 -8.09520 -7.92334 -6.05686 -4.06453 3.36732 3.38658 3.43432 3.89428 4.39923 4.41035 4.73942 4.85276 4.95352 4.97595 5.20287 5.21376 5.30866 5.35904 5.44378 5.46938 5.51596 5.56067 5.65151 5.68953 5.72090 5.84523 5.86842 5.93761 6.03362 6.12647 6.13539 6.22125 6.28825 6.35184 6.45359 6.58614 7.14546 7.36587 7.39078 7.48115 7.61214 7.86353 8.22296 8.67043 9.08175 9.58333 11.05955 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.005209 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.770197 B = 5374.486007 C = 6063.098610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.079 3.921 3 H 0.080 0.920 4 C -0.111 4.111 5 C -0.109 4.109 6 C -0.084 4.084 7 H 0.090 0.910 8 C 0.081 3.919 9 O -0.571 6.571 10 C 0.057 3.943 11 N -0.513 5.513 12 C 0.060 3.940 13 C 0.060 3.940 14 O -0.377 6.377 15 C 0.194 3.806 16 C -0.510 4.510 17 H 0.066 0.934 18 C 0.056 3.944 19 N -0.901 5.901 20 Si 0.907 3.093 21 H -0.287 1.287 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.376 0.624 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.056 1.144 -13.623 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.030 4.030 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.147 4.147 6 C -0.103 4.103 7 H 0.109 0.891 8 C 0.003 3.997 9 O -0.376 6.376 10 C -0.070 4.070 11 N -0.237 5.237 12 C -0.067 4.067 13 C -0.018 4.018 14 O -0.297 6.297 15 C 0.120 3.880 16 C -0.548 4.548 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.541 5.541 20 Si 0.734 3.266 21 H -0.212 1.212 22 H -0.200 1.200 23 H -0.200 1.200 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.222 0.778 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.079 1.680 -13.736 18.369 hybrid contribution -0.489 -0.758 0.606 1.087 sum -12.569 0.921 -13.130 18.199 Atomic orbital electron populations 1.22528 0.98326 1.02192 1.01787 1.21697 0.92120 0.98226 0.90936 0.90152 1.21585 1.01836 0.95345 0.96097 1.21567 0.99855 0.95440 0.97807 1.21121 1.02665 0.91714 0.94776 0.89145 1.22176 0.95794 0.92190 0.89519 1.86481 1.72333 1.26466 1.52322 1.22085 0.96454 0.89718 0.98788 1.61954 1.59126 1.01325 1.01274 1.22176 0.97300 0.98140 0.89134 1.22358 0.86218 0.97712 0.95469 1.87980 1.16487 1.76612 1.48601 1.20168 0.94350 0.89913 0.83578 1.21028 0.90786 1.34512 1.08483 0.91542 1.24937 0.99294 0.95309 0.94968 1.69959 1.36025 1.36392 1.11715 0.86412 0.84340 0.78294 0.77533 1.21239 1.20002 1.20033 0.92672 0.92376 0.92048 0.91950 0.90873 0.92648 0.91496 0.93261 0.94194 0.77817 0.89565 0.95166 0.94239 0.90078 0.94530 0.94325 0.98064 0.98052 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.99 8.19 37.16 0.30 -1.68 16 2 C 0.08 0.98 2.93 -67.73 -0.20 0.79 16 3 H 0.08 0.99 8.12 -51.92 -0.42 0.57 16 4 C -0.11 -1.32 5.61 -26.65 -0.15 -1.47 16 5 C -0.11 -1.32 4.85 -26.61 -0.13 -1.44 16 6 C -0.08 -1.17 2.59 -90.53 -0.23 -1.40 16 7 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 8 C 0.08 0.98 6.43 37.16 0.24 1.22 16 9 O -0.57 -6.87 13.25 -35.23 -0.47 -7.33 16 10 C 0.06 0.84 4.03 -3.83 -0.02 0.82 16 11 N -0.51 -7.93 4.62 -226.68 -1.05 -8.97 16 12 C 0.06 0.92 5.33 -3.82 -0.02 0.90 16 13 C 0.06 1.13 5.57 37.16 0.21 1.34 16 14 O -0.38 -9.28 10.23 -35.23 -0.36 -9.64 16 15 C 0.19 5.42 5.69 36.00 0.20 5.63 16 16 C -0.51 -15.33 9.43 -34.44 -0.32 -15.65 16 17 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 20 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.05 0.57 6.47 -51.93 -0.34 0.24 16 25 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.06 0.66 4.80 -51.93 -0.25 0.41 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.61 6.56 -51.93 -0.34 0.27 16 30 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.38 2.72 9.12 45.56 0.42 3.14 16 34 H 0.09 1.46 5.79 -51.93 -0.30 1.15 16 35 H 0.03 0.39 6.19 -51.93 -0.32 0.07 16 36 H 0.04 0.51 6.30 -51.93 -0.33 0.19 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.04 0.66 6.05 -51.93 -0.31 0.35 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 41 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -32.85 323.18 -7.88 -40.73 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.38 Total: -0.92 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -0.21 Total: -9.41 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.31 Total: -35.57 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.83 Total: -16.98 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.85 -7.88 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.278 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds