Wall clock time and date at job start Mon Mar 30 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 109.45289 * 2 1 4 4 C 1.53032 * 109.46405 * 240.03040 * 2 1 3 5 5 C 1.53122 * 109.27812 * 299.16409 * 4 2 1 6 6 C 1.53119 * 109.15740 * 302.34254 * 5 4 2 7 7 H 1.08996 * 109.50423 * 297.67468 * 6 5 4 8 8 C 1.53005 * 109.50401 * 177.59305 * 6 5 4 9 9 O 1.42900 * 109.46517 * 65.00114 * 8 6 5 10 10 C 1.53044 * 109.27695 * 57.65562 * 6 5 4 11 11 N 1.46839 * 109.46519 * 119.97264 * 2 1 3 12 12 C 1.46902 * 111.00274 * 294.17975 * 11 2 1 13 13 C 1.53000 * 109.47296 * 176.35474 * 12 11 2 14 14 O 1.42901 * 109.46875 * 62.28645 * 13 12 11 15 15 C 1.42900 * 114.00284 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47539 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99723 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99929 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00271 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99935 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47233 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.46867 * 300.00020 * 20 18 16 23 23 H 1.48495 * 109.47007 * 59.99936 * 20 18 16 24 24 H 1.09000 * 109.47405 * 300.02706 * 1 2 3 25 25 H 1.09008 * 109.47210 * 60.02152 * 1 2 3 26 26 H 1.08997 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.50671 * 59.10231 * 4 2 1 28 28 H 1.08999 * 109.50489 * 179.18087 * 4 2 1 29 29 H 1.08996 * 109.52257 * 62.24544 * 5 4 2 30 30 H 1.09001 * 109.52348 * 182.37904 * 5 4 2 31 31 H 1.08995 * 109.47211 * 185.00064 * 8 6 5 32 32 H 1.08999 * 109.46985 * 305.00816 * 8 6 5 33 33 H 0.96700 * 113.99705 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.46108 * 180.80413 * 10 6 5 35 35 H 1.08997 * 109.46222 * 60.83802 * 10 6 5 36 36 H 1.09004 * 109.47229 * 56.35610 * 12 11 2 37 37 H 1.09003 * 109.47008 * 296.35875 * 12 11 2 38 38 H 1.08999 * 109.47286 * 302.28732 * 13 12 11 39 39 H 1.08999 * 109.47039 * 182.28125 * 13 12 11 40 40 H 1.09004 * 109.46662 * 59.99625 * 15 14 13 41 41 H 1.09006 * 109.46945 * 300.00535 * 15 14 13 42 42 H 0.97002 * 119.99607 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0399 -0.7208 -1.2499 5 6 1.5443 -2.1695 -1.2357 6 6 2.0269 -2.8531 0.0466 7 1 3.1166 -2.8756 0.0590 8 6 1.4859 -4.2834 0.0977 9 8 2.0505 -5.0446 -0.9717 10 6 1.5174 -2.0704 1.2590 11 7 2.0193 -0.6917 1.1993 12 6 1.6651 0.0506 2.4165 13 6 2.1103 -0.7437 3.6460 14 8 3.5316 -0.8917 3.6285 15 6 4.0537 -1.6224 4.7399 16 6 5.5530 -1.7163 4.6199 17 1 6.0567 -1.2635 3.7786 18 6 6.2814 -2.3810 5.5834 19 7 5.6679 -2.9328 6.6075 20 14 8.1398 -2.4980 5.4342 21 1 8.6823 -3.2584 6.5886 22 1 8.4920 -3.1970 4.1722 23 1 8.7224 -1.1322 5.4227 24 1 -0.3634 0.5142 0.8897 25 1 -0.3634 0.5135 -0.8902 26 1 -0.3633 -1.0276 0.0005 27 1 1.6637 -0.2163 -2.1399 28 1 3.1298 -0.7084 -1.2580 29 1 0.4548 -2.1821 -1.2672 30 1 1.9400 -2.6984 -2.1027 31 1 1.7550 -4.7398 1.0502 32 1 0.4007 -4.2651 -0.0028 33 1 1.7515 -5.9638 -1.0008 34 1 1.8713 -2.5465 2.1735 35 1 0.4275 -2.0608 1.2531 36 1 0.5857 0.1984 2.4508 37 1 2.1644 1.0195 2.4095 38 1 1.6424 -1.7281 3.6317 39 1 1.8115 -0.2124 4.5496 40 1 3.6260 -2.6250 4.7488 41 1 3.7951 -1.1090 5.6661 42 1 6.1805 -3.4008 7.2852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:46 Heat of formation + Delta-G solvation = -128.286259 kcal Electronic energy + Delta-G solvation = -20306.063685 eV Core-core repulsion = 17284.711757 eV Total energy + Delta-G solvation = -3021.351927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94366 -38.54833 -37.69942 -35.16532 -34.48548 -33.31453 -30.40574 -28.99105 -28.42168 -26.32363 -25.08148 -24.45552 -22.42389 -21.99222 -19.65299 -18.61960 -18.20118 -17.64886 -17.35258 -16.45277 -16.16777 -16.11071 -15.89856 -15.50383 -15.05676 -14.91187 -14.30540 -14.01454 -13.81222 -13.69795 -13.43771 -13.39293 -12.97924 -12.85857 -12.69377 -12.46926 -12.27883 -12.23573 -11.95974 -11.86701 -11.41777 -11.30349 -11.13773 -11.10708 -10.84892 -10.79023 -10.16884 -9.03308 -8.31958 -6.43705 1.38668 1.43676 1.51955 2.34759 2.82757 3.01582 3.25509 3.45951 3.74738 3.87775 3.99758 4.17978 4.23166 4.25130 4.31767 4.42093 4.45162 4.46307 4.53293 4.62087 4.64928 4.68450 4.79137 4.83895 4.89442 4.93673 5.01585 5.10435 5.13605 5.19424 5.23662 5.24348 5.43234 5.55235 5.57379 5.97657 6.21178 6.32999 6.57171 6.86488 6.91199 7.28493 8.80163 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.005209 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.770197 B = 5374.486007 C = 6063.098610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.077 3.923 3 H 0.081 0.919 4 C -0.109 4.109 5 C -0.100 4.100 6 C -0.085 4.085 7 H 0.048 0.952 8 C 0.085 3.915 9 O -0.588 6.588 10 C 0.064 3.936 11 N -0.544 5.544 12 C 0.069 3.931 13 C 0.051 3.949 14 O -0.394 6.394 15 C 0.211 3.789 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.981 3.019 21 H -0.272 1.272 22 H -0.268 1.268 23 H -0.265 1.265 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.047 0.953 40 H -0.019 1.019 41 H -0.016 1.016 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.902 1.467 -14.854 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.031 4.031 3 H 0.099 0.901 4 C -0.147 4.147 5 C -0.137 4.137 6 C -0.104 4.104 7 H 0.067 0.933 8 C 0.007 3.993 9 O -0.396 6.396 10 C -0.064 4.064 11 N -0.268 5.268 12 C -0.058 4.058 13 C -0.027 4.027 14 O -0.313 6.313 15 C 0.136 3.864 16 C -0.584 4.584 17 H 0.076 0.924 18 C -0.190 4.190 19 N -0.570 5.570 20 Si 0.803 3.197 21 H -0.197 1.197 22 H -0.193 1.193 23 H -0.190 1.190 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.246 0.754 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.065 0.935 40 H -0.001 1.001 41 H 0.001 0.999 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.954 1.997 -14.979 19.904 hybrid contribution -0.290 -0.866 0.972 1.334 sum -13.244 1.131 -14.007 19.311 Atomic orbital electron populations 1.22442 0.96113 1.02537 1.02918 1.21767 0.93856 0.97833 0.89595 0.90111 1.21592 1.00458 0.95630 0.97038 1.21496 1.00878 0.95091 0.96269 1.21088 1.00167 0.93433 0.95759 0.93349 1.22105 0.97105 0.90978 0.89132 1.86428 1.72926 1.28185 1.52102 1.21960 0.97590 0.89279 0.97553 1.61899 1.60707 1.01936 1.02271 1.22088 0.99001 0.97039 0.87665 1.22716 0.83100 0.98898 0.97945 1.87933 1.20200 1.75987 1.47201 1.19763 0.93843 0.88934 0.83900 1.21339 0.92094 1.35922 1.09031 0.92419 1.25924 1.04870 0.94138 0.94112 1.70061 1.38306 1.36358 1.12262 0.85277 0.77420 0.78876 0.78106 1.19713 1.19297 1.18982 0.92408 0.90406 0.91980 0.89339 0.93275 0.90623 0.91892 0.94342 0.91479 0.75441 0.92812 0.92800 0.90894 0.90404 0.94053 0.93534 1.00101 0.99862 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.19 71.98 0.59 -2.59 16 2 C 0.08 1.79 2.93 44.94 0.13 1.93 16 3 H 0.08 1.86 8.12 -2.38 -0.02 1.84 16 4 C -0.11 -2.45 5.61 30.65 0.17 -2.27 16 5 C -0.10 -2.25 4.85 30.67 0.15 -2.10 16 6 C -0.09 -2.38 2.59 -10.74 -0.03 -2.41 16 7 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 8 C 0.08 1.99 6.43 71.98 0.46 2.45 16 9 O -0.59 -13.65 13.25 -148.98 -1.97 -15.63 16 10 C 0.06 1.85 4.03 86.33 0.35 2.20 16 11 N -0.54 -16.57 4.62 -871.10 -4.02 -20.59 16 12 C 0.07 2.08 5.33 86.30 0.46 2.54 16 13 C 0.05 1.93 5.57 71.98 0.40 2.33 16 14 O -0.39 -20.11 10.23 -148.98 -1.52 -21.63 16 15 C 0.21 12.29 5.69 71.23 0.41 12.69 16 16 C -0.55 -33.82 9.43 25.60 0.24 -33.58 16 17 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 18 C 0.01 0.47 5.46 84.65 0.46 0.93 16 19 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 20 Si 0.98 45.77 29.54 68.60 2.03 47.80 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H 0.06 0.99 6.47 -2.39 -0.02 0.97 16 25 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.06 1.09 4.80 -2.39 -0.01 1.07 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.42 6.56 -2.39 -0.02 1.40 16 30 H 0.06 1.48 7.90 -2.39 -0.02 1.46 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.40 5.22 9.12 -74.06 -0.68 4.54 16 34 H 0.05 1.89 5.79 -2.39 -0.01 1.87 16 35 H 0.05 1.29 6.19 -2.39 -0.01 1.27 16 36 H 0.07 1.71 6.30 -2.38 -0.02 1.69 16 37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.04 1.54 6.05 -2.39 -0.01 1.53 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 41 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -72.23 323.18 -1.09 -73.32 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.32 Total: 11.42 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 3.79 Total: -17.88 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -3.74 Total: -77.40 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -3.50 Total: -37.26 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -72.23 -1.09 -73.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.962 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds