Wall clock time and date at job start Mon Mar 30 2020 04:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.45929 * 2 1 4 4 C 1.53042 * 109.46198 * 119.97641 * 2 1 3 5 5 C 1.53116 * 109.30969 * 60.81511 * 4 2 1 6 6 C 1.53201 * 109.12045 * 57.63903 * 5 4 2 7 7 H 1.09002 * 109.49594 * 62.31232 * 6 5 4 8 8 C 1.53003 * 109.52824 * 182.40297 * 6 5 4 9 9 O 1.42902 * 109.46918 * 294.84083 * 8 6 5 10 10 C 1.53038 * 109.29523 * 302.36800 * 6 5 4 11 11 N 1.46849 * 109.52560 * 59.18144 * 10 6 5 12 12 C 1.46898 * 111.00241 * 174.15857 * 11 10 6 13 13 C 1.52995 * 109.46987 * 190.04852 * 12 11 10 14 14 O 1.42906 * 109.46976 * 63.62649 * 13 12 11 15 15 C 1.42903 * 113.99529 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46513 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00545 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00015 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99630 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00361 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47401 * 59.99565 * 20 18 16 22 22 H 1.48493 * 109.47313 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46999 * 299.99911 * 20 18 16 24 24 H 1.09005 * 109.47021 * 300.02603 * 1 2 3 25 25 H 1.09001 * 109.47155 * 60.02733 * 1 2 3 26 26 H 1.08998 * 109.47562 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.50147 * 180.77368 * 4 2 1 28 28 H 1.08995 * 109.50139 * 300.85462 * 4 2 1 29 29 H 1.09007 * 109.52261 * 177.58246 * 5 4 2 30 30 H 1.08996 * 109.52406 * 297.77009 * 5 4 2 31 31 H 1.09004 * 109.46900 * 54.83532 * 8 6 5 32 32 H 1.08994 * 109.47219 * 174.84303 * 8 6 5 33 33 H 0.96701 * 114.00187 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.46489 * 299.16308 * 10 6 5 35 35 H 1.08999 * 109.46450 * 179.19432 * 10 6 5 36 36 H 1.09000 * 109.46999 * 310.05245 * 12 11 10 37 37 H 1.09003 * 109.46735 * 70.04991 * 12 11 10 38 38 H 1.09000 * 109.46917 * 183.61827 * 13 12 11 39 39 H 1.09002 * 109.47551 * 303.61903 * 13 12 11 40 40 H 1.08994 * 109.47114 * 299.99538 * 15 14 13 41 41 H 1.08995 * 109.47306 * 59.99830 * 15 14 13 42 42 H 0.96997 * 119.99708 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5442 -2.1696 1.2365 6 6 2.0268 -2.8532 -0.0468 7 1 3.1165 -2.8751 -0.0596 8 6 1.4865 -4.2837 -0.0985 9 8 2.0546 -5.0463 0.9682 10 6 1.5173 -2.0705 -1.2591 11 7 2.0193 -0.6917 -1.1994 12 6 1.6651 0.0506 -2.4166 13 6 2.4090 1.3875 -2.4331 14 8 3.8164 1.1487 -2.4988 15 6 4.6074 2.3386 -2.5198 16 6 6.0670 1.9702 -2.5888 17 1 6.3612 0.9314 -2.6145 18 6 7.0270 2.9595 -2.6191 19 7 6.6688 4.2245 -2.5884 20 14 8.8363 2.5030 -2.7053 21 1 9.0906 1.7182 -3.9402 22 1 9.6583 3.7394 -2.7271 23 1 9.1983 1.6881 -1.5178 24 1 -0.3633 0.5143 0.8898 25 1 -0.3633 0.5134 -0.8902 26 1 -0.3634 -1.0276 0.0005 27 1 3.1298 -0.7093 1.2576 28 1 1.6643 -0.2161 2.1399 29 1 1.9408 -2.6984 2.1033 30 1 0.4548 -2.1822 1.2681 31 1 0.4015 -4.2663 0.0051 32 1 1.7532 -4.7386 -1.0524 33 1 1.7562 -5.9657 0.9968 34 1 0.4274 -2.0607 -1.2532 35 1 1.8711 -2.5465 -2.1736 36 1 1.9470 -0.5329 -3.2930 37 1 0.5905 0.2325 -2.4314 38 1 2.0976 1.9657 -3.3030 39 1 2.1768 1.9438 -1.5250 40 1 4.3415 2.9362 -3.3917 41 1 4.4209 2.9150 -1.6137 42 1 7.3441 4.9204 -2.6101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:49 Heat of formation + Delta-G solvation = -104.431633 kcal Electronic energy + Delta-G solvation = -20123.158709 eV Core-core repulsion = 17102.841195 eV Total energy + Delta-G solvation = -3020.317513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84983 -37.17699 -36.34574 -33.68072 -32.54904 -32.19404 -29.05288 -27.88002 -26.69401 -25.00855 -23.58088 -22.30030 -22.13530 -20.37955 -18.56441 -17.37889 -16.38567 -16.24979 -15.75478 -15.32459 -14.94705 -14.63319 -14.32457 -14.16920 -13.88426 -13.17558 -13.13528 -12.86138 -12.76427 -12.49550 -12.07186 -11.90734 -11.64182 -11.46605 -11.05269 -10.96183 -10.77562 -10.69108 -10.59002 -10.43940 -10.28128 -10.05433 -9.97677 -9.83309 -9.01805 -8.71138 -8.06304 -7.92613 -6.03582 -4.04213 3.37769 3.39742 3.44434 3.81621 4.32426 4.42461 4.69405 4.81997 4.94350 4.98644 5.14932 5.20813 5.30673 5.32859 5.33143 5.44903 5.47719 5.52810 5.58674 5.66960 5.73117 5.84116 5.87106 5.95616 6.03311 6.12108 6.18464 6.19763 6.28863 6.36117 6.43954 6.58235 7.18493 7.34870 7.38408 7.47655 7.51950 7.88371 8.25152 8.70825 9.10641 9.60389 11.08157 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.004596 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.860678 B = 6090.658387 C = 6694.734177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.077 3.923 3 H 0.088 0.912 4 C -0.112 4.112 5 C -0.108 4.108 6 C -0.085 4.085 7 H 0.089 0.911 8 C 0.082 3.918 9 O -0.570 6.570 10 C 0.062 3.938 11 N -0.514 5.514 12 C 0.059 3.941 13 C 0.067 3.933 14 O -0.378 6.378 15 C 0.194 3.806 16 C -0.510 4.510 17 H 0.066 0.934 18 C 0.055 3.945 19 N -0.901 5.901 20 Si 0.907 3.093 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.376 0.624 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 -13.704 5.398 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.032 4.032 3 H 0.106 0.894 4 C -0.150 4.150 5 C -0.146 4.146 6 C -0.104 4.104 7 H 0.107 0.893 8 C 0.004 3.996 9 O -0.375 6.375 10 C -0.066 4.066 11 N -0.237 5.237 12 C -0.068 4.068 13 C -0.011 4.011 14 O -0.298 6.298 15 C 0.120 3.880 16 C -0.548 4.548 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.541 5.541 20 Si 0.734 3.266 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.222 0.778 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.227 -13.137 5.526 20.138 hybrid contribution -0.402 -0.215 -0.301 0.546 sum -14.630 -13.352 5.226 20.484 Atomic orbital electron populations 1.22520 0.98383 1.01881 1.01957 1.21743 0.91857 0.99074 0.90497 0.89370 1.21588 1.02160 0.94942 0.96272 1.21573 0.99841 0.95689 0.97495 1.21157 1.02507 0.91589 0.95178 0.89276 1.22176 0.95982 0.92149 0.89276 1.86508 1.72049 1.26403 1.52564 1.21973 0.96879 0.89872 0.97890 1.61931 1.59174 1.00884 1.01703 1.22162 0.96275 0.95534 0.92855 1.22251 0.85618 0.94586 0.98672 1.87957 1.13347 1.33676 1.94803 1.20160 0.90207 0.82622 0.95020 1.21032 0.89771 0.93781 1.50193 0.91589 1.24939 0.99599 0.94690 0.95300 1.69959 1.34056 0.99182 1.50892 0.86412 0.83708 0.77594 0.78849 1.20072 1.21247 1.20011 0.92242 0.92675 0.92263 0.90615 0.91833 0.91473 0.92627 0.94074 0.93641 0.77815 0.94960 0.90861 0.90290 0.94127 0.94464 0.94633 0.98106 0.97988 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 8.19 37.16 0.30 -1.82 16 2 C 0.08 1.07 2.77 -67.72 -0.19 0.89 16 3 H 0.09 1.40 6.15 -51.93 -0.32 1.09 16 4 C -0.11 -1.47 5.61 -26.65 -0.15 -1.62 16 5 C -0.11 -1.28 4.86 -26.57 -0.13 -1.41 16 6 C -0.09 -1.04 2.59 -90.50 -0.23 -1.28 16 7 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 8 C 0.08 0.80 6.43 37.16 0.24 1.04 16 9 O -0.57 -5.80 13.26 -35.23 -0.47 -6.27 16 10 C 0.06 0.77 4.45 -3.83 -0.02 0.76 16 11 N -0.51 -7.89 4.53 -226.69 -1.03 -8.92 16 12 C 0.06 0.91 5.19 -3.83 -0.02 0.89 16 13 C 0.07 1.27 5.98 37.16 0.22 1.50 16 14 O -0.38 -9.45 10.25 -35.23 -0.36 -9.81 16 15 C 0.19 5.49 5.69 36.01 0.20 5.70 16 16 C -0.51 -15.43 9.43 -34.44 -0.32 -15.76 16 17 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 20 Si 0.91 22.39 29.54 -169.99 -5.02 17.37 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.62 6.43 -51.93 -0.33 0.28 16 26 H 0.06 0.63 4.80 -51.93 -0.25 0.38 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.82 7.91 -51.92 -0.41 0.41 16 30 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.38 1.99 9.12 45.56 0.42 2.41 16 34 H 0.03 0.36 6.19 -51.93 -0.32 0.04 16 35 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 36 H 0.08 1.21 7.99 -51.93 -0.41 0.80 16 37 H 0.04 0.53 6.21 -51.93 -0.32 0.20 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.67 6.28 -51.93 -0.33 0.34 16 40 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 323.86 15.07 4.88 4.88 Total: -1.00 -33.30 323.86 -7.84 -41.14 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.39 Total: -2.02 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.19 Total: -9.58 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.29 Total: -35.71 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.83 Total: -16.08 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.30 -7.84 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.293 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds