Wall clock time and date at job start Mon Mar 30 2020 04:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.45929 * 2 1 4 4 C 1.53042 * 109.46198 * 119.97641 * 2 1 3 5 5 C 1.53116 * 109.30969 * 60.81511 * 4 2 1 6 6 C 1.53201 * 109.12045 * 57.63903 * 5 4 2 7 7 H 1.09002 * 109.49594 * 62.31232 * 6 5 4 8 8 C 1.53003 * 109.52824 * 182.40297 * 6 5 4 9 9 O 1.42902 * 109.46918 * 294.84083 * 8 6 5 10 10 C 1.53038 * 109.29523 * 302.36800 * 6 5 4 11 11 N 1.46849 * 109.52560 * 59.18144 * 10 6 5 12 12 C 1.46898 * 111.00241 * 174.15857 * 11 10 6 13 13 C 1.52995 * 109.46987 * 190.04852 * 12 11 10 14 14 O 1.42906 * 109.46976 * 63.62649 * 13 12 11 15 15 C 1.42903 * 113.99529 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46513 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00545 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00015 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99630 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00361 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47401 * 59.99565 * 20 18 16 22 22 H 1.48493 * 109.47313 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46999 * 299.99911 * 20 18 16 24 24 H 1.09005 * 109.47021 * 300.02603 * 1 2 3 25 25 H 1.09001 * 109.47155 * 60.02733 * 1 2 3 26 26 H 1.08998 * 109.47562 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.50147 * 180.77368 * 4 2 1 28 28 H 1.08995 * 109.50139 * 300.85462 * 4 2 1 29 29 H 1.09007 * 109.52261 * 177.58246 * 5 4 2 30 30 H 1.08996 * 109.52406 * 297.77009 * 5 4 2 31 31 H 1.09004 * 109.46900 * 54.83532 * 8 6 5 32 32 H 1.08994 * 109.47219 * 174.84303 * 8 6 5 33 33 H 0.96701 * 114.00187 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.46489 * 299.16308 * 10 6 5 35 35 H 1.08999 * 109.46450 * 179.19432 * 10 6 5 36 36 H 1.09000 * 109.46999 * 310.05245 * 12 11 10 37 37 H 1.09003 * 109.46735 * 70.04991 * 12 11 10 38 38 H 1.09000 * 109.46917 * 183.61827 * 13 12 11 39 39 H 1.09002 * 109.47551 * 303.61903 * 13 12 11 40 40 H 1.08994 * 109.47114 * 299.99538 * 15 14 13 41 41 H 1.08995 * 109.47306 * 59.99830 * 15 14 13 42 42 H 0.96997 * 119.99708 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5442 -2.1696 1.2365 6 6 2.0268 -2.8532 -0.0468 7 1 3.1165 -2.8751 -0.0596 8 6 1.4865 -4.2837 -0.0985 9 8 2.0546 -5.0463 0.9682 10 6 1.5173 -2.0705 -1.2591 11 7 2.0193 -0.6917 -1.1994 12 6 1.6651 0.0506 -2.4166 13 6 2.4090 1.3875 -2.4331 14 8 3.8164 1.1487 -2.4988 15 6 4.6074 2.3386 -2.5198 16 6 6.0670 1.9702 -2.5888 17 1 6.3612 0.9314 -2.6145 18 6 7.0270 2.9595 -2.6191 19 7 6.6688 4.2245 -2.5884 20 14 8.8363 2.5030 -2.7053 21 1 9.0906 1.7182 -3.9402 22 1 9.6583 3.7394 -2.7271 23 1 9.1983 1.6881 -1.5178 24 1 -0.3633 0.5143 0.8898 25 1 -0.3633 0.5134 -0.8902 26 1 -0.3634 -1.0276 0.0005 27 1 3.1298 -0.7093 1.2576 28 1 1.6643 -0.2161 2.1399 29 1 1.9408 -2.6984 2.1033 30 1 0.4548 -2.1822 1.2681 31 1 0.4015 -4.2663 0.0051 32 1 1.7532 -4.7386 -1.0524 33 1 1.7562 -5.9657 0.9968 34 1 0.4274 -2.0607 -1.2532 35 1 1.8711 -2.5465 -2.1736 36 1 1.9470 -0.5329 -3.2930 37 1 0.5905 0.2325 -2.4314 38 1 2.0976 1.9657 -3.3030 39 1 2.1768 1.9438 -1.5250 40 1 4.3415 2.9362 -3.3917 41 1 4.4209 2.9150 -1.6137 42 1 7.3441 4.9204 -2.6101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:49 Heat of formation + Delta-G solvation = -130.123512 kcal Electronic energy + Delta-G solvation = -20124.272792 eV Core-core repulsion = 17102.841195 eV Total energy + Delta-G solvation = -3021.431597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91484 -38.54910 -37.64204 -35.14535 -34.48350 -33.20218 -30.59081 -28.99404 -28.58309 -25.90868 -24.84133 -24.38129 -23.36260 -21.50135 -19.60279 -18.58875 -18.14703 -17.58073 -17.41515 -16.61934 -16.26132 -15.87520 -15.84390 -15.52583 -15.31032 -14.55851 -14.36415 -14.05716 -13.84759 -13.58038 -13.40251 -13.34097 -13.02606 -12.86373 -12.72477 -12.62217 -12.29154 -12.11436 -12.00020 -11.84002 -11.41278 -11.29933 -11.24510 -11.02903 -10.82447 -10.76791 -10.15955 -9.02255 -8.31392 -6.43339 1.38987 1.44215 1.52557 2.35355 2.83768 3.02076 3.24132 3.53522 3.75863 3.88062 3.97749 4.16857 4.23557 4.26301 4.32709 4.38853 4.51593 4.56376 4.59215 4.62572 4.64023 4.70093 4.72128 4.82009 4.90176 4.91241 4.99832 5.11067 5.12129 5.19257 5.19934 5.23352 5.43537 5.55531 5.56782 5.98211 6.23597 6.31647 6.58113 6.87517 6.97661 7.28910 8.80915 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.004596 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.860678 B = 6090.658387 C = 6694.734177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.075 3.925 3 H 0.058 0.942 4 C -0.111 4.111 5 C -0.099 4.099 6 C -0.087 4.087 7 H 0.052 0.948 8 C 0.087 3.913 9 O -0.593 6.593 10 C 0.066 3.934 11 N -0.547 5.547 12 C 0.069 3.931 13 C 0.057 3.943 14 O -0.395 6.395 15 C 0.210 3.790 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.931 5.931 20 Si 0.982 3.018 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.268 1.268 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.396 0.604 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.035 0.965 40 H -0.016 1.016 41 H -0.020 1.020 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 -15.144 5.455 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.033 4.033 3 H 0.076 0.924 4 C -0.149 4.149 5 C -0.137 4.137 6 C -0.106 4.106 7 H 0.070 0.930 8 C 0.009 3.991 9 O -0.401 6.401 10 C -0.062 4.062 11 N -0.271 5.271 12 C -0.058 4.058 13 C -0.020 4.020 14 O -0.314 6.314 15 C 0.135 3.865 16 C -0.584 4.584 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.571 5.571 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.193 1.193 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.246 0.754 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.002 0.998 41 H -0.003 1.003 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.292 -14.603 5.586 21.870 hybrid contribution -0.135 0.248 -0.286 0.402 sum -15.427 -14.355 5.300 21.729 Atomic orbital electron populations 1.22413 0.95598 1.02967 1.02708 1.21690 0.94015 0.97357 0.90263 0.92366 1.21573 1.00087 0.96504 0.96763 1.21502 1.00913 0.94142 0.97111 1.21135 1.00378 0.93744 0.95347 0.92991 1.22104 0.96981 0.90352 0.89620 1.86453 1.72705 1.28190 1.52756 1.21981 0.98177 0.88021 0.97975 1.61845 1.60894 1.02425 1.01923 1.22062 0.97330 0.93325 0.93120 1.22618 0.82795 0.97606 0.99031 1.87912 1.16406 1.32259 1.94834 1.19766 0.90467 0.83274 0.92999 1.21343 0.91233 0.93816 1.51992 0.92353 1.25947 1.04871 0.94365 0.93929 1.70065 1.36114 1.00298 1.50595 0.85255 0.77008 0.77931 0.79335 1.18928 1.19742 1.19261 0.91080 0.92393 0.90841 0.94041 0.90351 0.92028 0.90450 0.91724 0.92764 0.75381 0.92470 0.90863 0.90305 0.90756 0.93593 0.94648 0.99848 1.00259 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.19 71.98 0.59 -2.96 16 2 C 0.08 2.07 2.77 44.94 0.12 2.20 16 3 H 0.06 1.93 6.15 -2.39 -0.01 1.91 16 4 C -0.11 -2.95 5.61 30.65 0.17 -2.77 16 5 C -0.10 -2.21 4.86 30.70 0.15 -2.06 16 6 C -0.09 -2.04 2.59 -10.71 -0.03 -2.07 16 7 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 8 C 0.09 1.49 6.43 71.98 0.46 1.95 16 9 O -0.59 -10.97 13.26 -148.98 -1.97 -12.95 16 10 C 0.07 1.53 4.45 86.33 0.38 1.92 16 11 N -0.55 -16.60 4.53 -871.11 -3.95 -20.54 16 12 C 0.07 2.06 5.19 86.30 0.45 2.51 16 13 C 0.06 2.21 5.98 71.98 0.43 2.64 16 14 O -0.39 -20.44 10.25 -148.98 -1.53 -21.97 16 15 C 0.21 12.42 5.69 71.24 0.41 12.82 16 16 C -0.55 -34.04 9.43 25.60 0.24 -33.80 16 17 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 18 C 0.01 0.43 5.46 84.66 0.46 0.89 16 19 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 20 Si 0.98 45.94 29.54 68.60 2.03 47.97 16 21 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.06 1.12 6.43 -2.39 -0.02 1.11 16 26 H 0.07 1.26 4.80 -2.39 -0.01 1.25 16 27 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.45 7.91 -2.38 -0.02 1.43 16 30 H 0.08 1.40 6.56 -2.39 -0.02 1.39 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.40 3.31 9.12 -74.06 -0.68 2.64 16 34 H 0.06 1.06 6.19 -2.39 -0.01 1.05 16 35 H 0.07 1.69 8.01 -2.39 -0.02 1.67 16 36 H 0.08 2.35 7.99 -2.39 -0.02 2.33 16 37 H 0.07 1.73 6.21 -2.39 -0.01 1.72 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.37 6.28 -2.39 -0.01 1.36 16 40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -73.48 323.86 -0.98 -74.45 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.32 Total: 9.09 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 3.84 Total: -18.73 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -3.66 Total: -77.85 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -3.50 Total: -34.92 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -73.48 -0.98 -74.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.669 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds