Wall clock time and date at job start Mon Mar 30 2020 05:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46863 * 2 1 4 4 C 1.36941 * 119.99993 * 82.96490 * 3 2 1 5 5 H 1.07996 * 119.99942 * 170.96938 * 4 3 2 6 6 C 1.38812 * 119.99825 * 350.96554 * 4 3 2 7 7 N 1.31625 * 119.99713 * 1.73980 * 6 4 3 8 8 Si 1.86794 * 120.00116 * 181.73735 * 6 4 3 9 9 H 1.48498 * 109.47070 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47146 * 120.00237 * 8 6 4 11 11 H 1.48503 * 109.47285 * 240.00253 * 8 6 4 12 12 C 1.46498 * 120.00348 * 262.96000 * 3 2 1 13 13 C 1.53001 * 109.47149 * 273.10659 * 12 3 2 14 14 O 1.42891 * 109.47161 * 66.68275 * 13 12 3 15 15 C 1.42905 * 114.00029 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47349 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.47902 * 305.01845 * 16 15 14 18 18 C 1.53086 * 109.47973 * 184.99519 * 16 15 14 19 19 C 1.53179 * 109.16358 * 182.39378 * 18 16 15 20 20 C 1.53180 * 109.03204 * 56.98227 * 19 18 16 21 21 C 1.53094 * 109.21492 * 302.98722 * 20 19 18 22 22 O 1.42908 * 109.49014 * 65.04736 * 16 15 14 23 23 H 1.09007 * 109.46470 * 306.84606 * 1 2 3 24 24 H 1.08996 * 109.47580 * 66.84379 * 1 2 3 25 25 H 1.09000 * 109.47046 * 186.85117 * 1 2 3 26 26 H 1.09000 * 109.46767 * 240.00709 * 2 1 3 27 27 H 1.08994 * 109.47683 * 120.00513 * 2 1 3 28 28 H 0.97002 * 119.99272 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.47613 * 153.10271 * 12 3 2 30 30 H 1.09002 * 109.47116 * 33.10590 * 12 3 2 31 31 H 1.09007 * 109.46833 * 306.67836 * 13 12 3 32 32 H 1.09005 * 109.46869 * 186.68317 * 13 12 3 33 33 H 1.08993 * 109.47289 * 59.99252 * 15 14 13 34 34 H 1.09001 * 109.46729 * 299.99443 * 15 14 13 35 35 H 1.09000 * 109.52142 * 62.49084 * 18 16 15 36 36 H 1.09000 * 109.52510 * 302.30493 * 18 16 15 37 37 H 1.09001 * 109.54575 * 297.11825 * 19 18 16 38 38 H 1.09003 * 109.61925 * 176.89131 * 19 18 16 39 39 H 1.09004 * 109.52322 * 62.93039 * 20 19 18 40 40 H 1.09008 * 109.51729 * 183.05082 * 20 19 18 41 41 H 1.09005 * 109.47561 * 177.62516 * 21 20 19 42 42 H 1.08995 * 109.48112 * 297.65704 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1096 2.0752 1.1770 5 1 2.6029 3.0356 1.2007 6 6 1.5680 1.5442 2.3396 7 7 0.9969 0.3585 2.3177 8 14 1.6495 2.5123 3.9350 9 1 2.3367 3.8065 3.6941 10 1 0.2729 2.7679 4.4298 11 1 2.4033 1.7324 4.9493 12 6 2.4091 2.0201 -1.2591 13 6 3.8749 1.7006 -1.5597 14 8 4.0130 0.3035 -1.8255 15 6 5.3513 -0.1027 -2.1192 16 6 5.3803 -1.6092 -2.3852 17 1 4.9419 -2.1364 -1.5378 18 6 6.8288 -2.0660 -2.5768 19 6 6.8452 -3.5629 -2.9016 20 6 5.9872 -3.8135 -4.1456 21 6 4.5705 -3.2903 -3.8943 22 8 4.6304 -1.8994 -3.5666 23 1 -0.3632 0.6163 0.8225 24 1 -0.3634 0.4041 -0.9448 25 1 -0.3633 -1.0203 0.1226 26 1 1.8933 -0.5137 -0.8901 27 1 1.8935 -0.5139 0.8899 28 1 0.6188 -0.0127 3.1302 29 1 2.2826 3.0994 -1.1736 30 1 1.7820 1.6438 -2.0674 31 1 4.4890 1.9696 -0.7002 32 1 4.1996 2.2701 -2.4306 33 1 5.9956 0.1286 -1.2712 34 1 5.7070 0.4292 -3.0016 35 1 7.3917 -1.8858 -1.6610 36 1 7.2804 -1.5100 -3.3984 37 1 6.4390 -4.1232 -2.0596 38 1 7.8688 -3.8844 -3.0939 39 1 6.4218 -3.2929 -4.9989 40 1 5.9492 -4.8831 -4.3523 41 1 3.9676 -3.4283 -4.7919 42 1 4.1217 -3.8395 -3.0667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687808435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:55 Heat of formation + Delta-G solvation = -70.219778 kcal Electronic energy + Delta-G solvation = -20290.956252 eV Core-core repulsion = 17272.122276 eV Total energy + Delta-G solvation = -3018.833976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.38727 -37.31119 -35.54507 -33.62043 -32.22354 -31.15936 -29.53134 -27.66833 -26.40684 -24.10975 -23.65583 -22.00706 -21.71533 -20.29106 -19.73113 -16.65861 -16.49433 -16.02729 -15.83639 -15.25565 -14.73282 -14.54225 -14.44320 -13.83343 -13.34061 -13.16979 -13.01249 -12.70348 -12.21043 -11.87950 -11.82238 -11.34067 -11.25372 -11.16476 -11.03453 -10.77932 -10.76185 -10.52540 -10.46681 -10.23069 -10.16317 -9.73117 -9.43758 -9.36223 -9.28583 -8.91849 -8.17042 -6.64111 -5.45307 -2.96005 3.43986 3.50223 3.52131 3.84453 4.11871 4.58693 4.69957 4.75618 4.81162 5.05948 5.19501 5.35777 5.42568 5.53268 5.55105 5.60417 5.64126 5.69284 5.73956 5.80487 5.83608 5.94812 6.03435 6.08657 6.20221 6.27448 6.30509 6.60593 6.86951 6.97323 7.27695 7.35607 7.39138 7.55123 7.77365 7.90239 8.16762 8.37465 8.65269 9.45376 10.06737 10.51020 11.45137 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.004688 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.629487 B = 5971.082192 C = 6040.011572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.173 3.827 3 N -0.599 5.599 4 C -0.235 4.235 5 H 0.070 0.930 6 C -0.013 4.013 7 N -0.907 5.907 8 Si 0.906 3.094 9 H -0.282 1.282 10 H -0.292 1.292 11 H -0.293 1.293 12 C 0.152 3.848 13 C 0.042 3.958 14 O -0.363 6.363 15 C 0.070 3.930 16 C 0.094 3.906 17 H 0.068 0.932 18 C -0.148 4.148 19 C -0.121 4.121 20 C -0.157 4.157 21 C 0.059 3.941 22 O -0.368 6.368 23 H 0.081 0.919 24 H -0.005 1.005 25 H 0.017 0.983 26 H 0.010 0.990 27 H 0.094 0.906 28 H 0.245 0.755 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.654 -6.200 -11.153 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.049 3.951 3 N -0.320 5.320 4 C -0.364 4.364 5 H 0.088 0.912 6 C -0.208 4.208 7 N -0.556 5.556 8 Si 0.737 3.263 9 H -0.208 1.208 10 H -0.219 1.219 11 H -0.220 1.220 12 C 0.024 3.976 13 C -0.038 4.038 14 O -0.281 6.281 15 C -0.007 4.007 16 C 0.036 3.964 17 H 0.086 0.914 18 C -0.186 4.186 19 C -0.159 4.159 20 C -0.194 4.194 21 C -0.018 4.018 22 O -0.287 6.287 23 H 0.100 0.900 24 H 0.014 0.986 25 H 0.036 0.964 26 H 0.028 0.972 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.325 -6.253 -11.100 16.399 hybrid contribution 0.446 0.431 1.002 1.179 sum 10.772 -5.821 -10.098 15.871 Atomic orbital electron populations 1.22398 0.99874 0.98632 0.98328 1.20940 0.91700 0.83891 0.98589 1.44134 1.75023 1.11663 1.01220 1.19409 1.29488 1.01161 0.86392 0.91168 1.24813 1.00484 0.97459 0.98046 1.70308 1.43453 1.16330 1.25528 0.86128 0.77100 0.78988 0.84037 1.20775 1.21911 1.22040 1.20767 0.90774 0.96364 0.89676 1.23536 1.02079 0.81034 0.97114 1.88048 1.24756 1.24932 1.90402 1.22356 0.86761 0.92854 0.98729 1.22078 0.90509 0.95413 0.88374 0.91406 1.22136 0.97192 0.96618 1.02656 1.21567 1.00183 0.96031 0.98093 1.22211 0.97145 1.01405 0.98665 1.22562 0.95572 0.82960 1.00690 1.88036 1.73064 1.23535 1.44059 0.90025 0.98569 0.96439 0.97180 0.88782 0.94341 0.92205 0.93797 0.93756 0.95414 0.92575 0.93636 0.90695 0.91083 0.91626 0.91555 0.91254 0.91122 0.89071 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.28 37.16 0.35 -3.07 16 2 C 0.17 4.58 5.48 -4.04 -0.02 4.55 16 3 N -0.60 -15.59 2.53 -173.23 -0.44 -16.03 16 4 C -0.23 -6.50 9.76 -15.06 -0.15 -6.65 16 5 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 6 C -0.01 -0.36 5.18 -17.43 -0.09 -0.45 16 7 N -0.91 -26.14 7.30 55.49 0.40 -25.73 16 8 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 C 0.15 3.32 6.06 -4.04 -0.02 3.29 16 13 C 0.04 0.81 6.27 37.16 0.23 1.04 16 14 O -0.36 -7.34 9.04 -39.98 -0.36 -7.70 16 15 C 0.07 1.12 5.60 37.16 0.21 1.33 16 16 C 0.09 1.37 2.93 -26.68 -0.08 1.29 16 17 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 18 C -0.15 -1.63 5.42 -26.59 -0.14 -1.77 16 19 C -0.12 -1.16 6.03 -26.55 -0.16 -1.32 16 20 C -0.16 -1.49 6.13 -26.59 -0.16 -1.65 16 21 C 0.06 0.70 6.86 37.21 0.26 0.96 16 22 O -0.37 -5.76 10.37 -39.98 -0.41 -6.17 16 23 H 0.08 2.31 6.07 -51.93 -0.32 2.00 16 24 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.01 0.26 7.01 -51.93 -0.36 -0.11 16 27 H 0.09 2.75 5.91 -51.93 -0.31 2.44 16 28 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.06 1.22 8.01 -51.93 -0.42 0.80 16 30 H 0.04 0.95 8.10 -51.93 -0.42 0.52 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -30.61 328.50 -8.38 -38.99 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -7.71 Total: -2.96 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 0.21 Total: -2.45 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.03 Total: -41.76 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.78 Total: -13.87 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.61 -8.38 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687808435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.227 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds