Wall clock time and date at job start Mon Mar 30 2020 04:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.48165 * 2 1 4 4 C 1.53089 * 109.48496 * 120.02692 * 2 1 3 5 5 C 1.53181 * 109.15864 * 62.37357 * 4 2 1 6 6 C 1.53177 * 109.03583 * 56.98471 * 5 4 2 7 7 C 1.53090 * 109.16133 * 303.01575 * 6 5 4 8 8 H 1.08997 * 109.48305 * 297.61489 * 7 6 5 9 9 C 1.53007 * 109.47772 * 177.59329 * 7 6 5 10 10 N 1.46903 * 109.46715 * 179.97438 * 9 7 6 11 11 C 1.46908 * 110.99822 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47014 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47307 * 65.00021 * 12 11 10 14 14 C 1.42896 * 114.00089 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47293 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99792 * 359.72305 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47163 * 59.99902 * 19 17 15 21 21 H 1.48495 * 109.47159 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47290 * 299.99897 * 19 17 15 23 23 O 1.42897 * 109.41879 * 57.61022 * 7 6 5 24 24 H 1.09000 * 109.46920 * 299.96962 * 1 2 3 25 25 H 1.08997 * 109.47473 * 59.97140 * 1 2 3 26 26 H 1.08998 * 109.46594 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.52100 * 302.46950 * 4 2 1 28 28 H 1.08997 * 109.57386 * 182.30818 * 4 2 1 29 29 H 1.08996 * 109.54819 * 297.11354 * 5 4 2 30 30 H 1.09004 * 109.54049 * 176.84361 * 5 4 2 31 31 H 1.09004 * 109.52284 * 183.11251 * 6 5 4 32 32 H 1.08994 * 109.52750 * 62.92205 * 6 5 4 33 33 H 1.09001 * 109.46933 * 60.00376 * 9 7 6 34 34 H 1.08995 * 109.47433 * 299.99880 * 9 7 6 35 35 H 1.00898 * 110.99895 * 56.05213 * 10 9 7 36 36 H 1.08996 * 109.46465 * 60.00115 * 11 10 9 37 37 H 1.09001 * 109.46779 * 300.00500 * 11 10 9 38 38 H 1.09009 * 109.46809 * 304.99875 * 12 11 10 39 39 H 1.09000 * 109.47134 * 185.00415 * 12 11 10 40 40 H 1.09004 * 109.47379 * 59.99882 * 14 13 12 41 41 H 1.08997 * 109.47194 * 300.00391 * 14 13 12 42 42 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5758 -2.1813 1.2121 6 6 2.0765 -2.8321 -0.0809 7 6 1.5645 -2.0284 -1.2791 8 1 0.4750 -2.0551 -1.2959 9 6 2.1099 -2.6373 -2.5725 10 7 1.6180 -1.8662 -3.7220 11 6 2.1231 -2.4229 -4.9843 12 6 1.5912 -1.5949 -6.1558 13 8 2.1258 -0.2716 -6.0855 14 6 1.6897 0.5883 -7.1401 15 6 2.3109 1.9504 -6.9671 16 1 2.9722 2.1405 -6.1347 17 6 2.0340 2.9542 -7.8709 18 7 1.2321 2.7214 -8.8870 19 14 2.8046 4.6423 -7.6568 20 1 4.2840 4.5201 -7.6984 21 1 2.3512 5.5359 -8.7527 22 1 2.3916 5.2128 -6.3494 23 8 2.0065 -0.6742 -1.1665 24 1 -0.3633 0.5134 0.8903 25 1 -0.3634 0.5142 -0.8897 26 1 -0.3632 -1.0277 -0.0005 27 1 1.6422 -0.2357 2.1398 28 1 3.1298 -0.6874 1.2719 29 1 0.4868 -2.2180 1.2408 30 1 1.9827 -2.7157 2.0706 31 1 1.7038 -3.8546 -0.1422 32 1 3.1664 -2.8399 -0.0865 33 1 1.7735 -3.6705 -2.6577 34 1 3.1994 -2.6101 -2.5557 35 1 1.8616 -0.8910 -3.6342 36 1 1.7875 -3.4548 -5.0862 37 1 3.2127 -2.3934 -4.9840 38 1 0.5032 -1.5504 -6.1048 39 1 1.8922 -2.0590 -7.0950 40 1 0.6038 0.6782 -7.1101 41 1 1.9931 0.1693 -8.0995 42 1 1.0371 3.4277 -9.5226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688920876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:19 Heat of formation + Delta-G solvation = -115.312040 kcal Electronic energy + Delta-G solvation = -19624.364560 eV Core-core repulsion = 16603.575237 eV Total energy + Delta-G solvation = -3020.789323 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92469 -37.12227 -35.41932 -33.73571 -32.83339 -32.29814 -29.53612 -27.97289 -26.72216 -25.07617 -23.20381 -22.28935 -21.77524 -21.20969 -19.36181 -16.64644 -16.38102 -16.19996 -15.72038 -15.35329 -15.04009 -14.94758 -14.39307 -14.27979 -13.74928 -13.54466 -13.18170 -12.89863 -12.73709 -12.36091 -12.17879 -11.87253 -11.72083 -11.57139 -11.32194 -11.17042 -11.09357 -10.86748 -10.76966 -10.67626 -10.46599 -10.11310 -9.92247 -9.36715 -9.06060 -8.76226 -8.11446 -8.10294 -6.05989 -4.07333 3.35839 3.38022 3.42365 3.74620 4.28321 4.39589 4.58199 4.66883 4.72892 4.98783 5.00897 5.02088 5.19386 5.23243 5.30363 5.30679 5.40087 5.49460 5.52833 5.62625 5.65938 5.70983 5.77466 5.81221 5.86511 5.90370 6.02729 6.10550 6.14387 6.26336 6.28336 6.41810 7.16939 7.25810 7.35742 7.49795 7.81240 7.84582 8.21149 8.64457 9.06112 9.57231 11.05613 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.004188 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.096569 B = 6683.687072 C = 7613.861598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.088 3.912 3 H 0.101 0.899 4 C -0.150 4.150 5 C -0.122 4.122 6 C -0.149 4.149 7 C 0.089 3.911 8 H 0.069 0.931 9 C 0.067 3.933 10 N -0.686 5.686 11 C 0.065 3.935 12 C 0.063 3.937 13 O -0.398 6.398 14 C 0.197 3.803 15 C -0.514 4.514 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.908 3.092 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 O -0.368 6.368 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.033 0.967 35 H 0.365 0.635 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.040 0.960 40 H 0.006 0.994 41 H 0.003 0.997 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 -11.389 19.061 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.030 3.970 3 H 0.119 0.881 4 C -0.188 4.188 5 C -0.159 4.159 6 C -0.188 4.188 7 C 0.031 3.969 8 H 0.087 0.913 9 C -0.062 4.062 10 N -0.319 5.319 11 C -0.064 4.064 12 C -0.015 4.015 13 O -0.318 6.318 14 C 0.123 3.877 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.735 3.265 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 O -0.287 6.287 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.185 0.815 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.023 0.977 41 H 0.021 0.979 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.857 -11.479 18.854 22.090 hybrid contribution 0.880 0.923 0.015 1.276 sum 0.023 -10.556 18.870 21.622 Atomic orbital electron populations 1.22449 0.96392 1.02642 1.02838 1.22124 0.93587 0.96405 0.84888 0.88114 1.22198 1.01722 0.96251 0.98621 1.21596 1.01057 0.95729 0.97534 1.22180 1.01882 0.99582 0.95131 1.22144 0.98807 0.82351 0.93612 0.91293 1.21943 0.97504 0.97400 0.89385 1.60487 1.62458 1.08629 1.00366 1.21948 0.97501 0.97549 0.89435 1.22285 0.97639 0.85929 0.95689 1.87804 1.71309 1.20069 1.52603 1.20161 0.94493 0.88441 0.84588 1.21036 1.28499 0.94501 1.11167 0.91632 1.24943 0.95349 0.99290 0.94898 1.69960 1.36180 1.33749 1.14004 0.86401 0.79561 0.82810 0.77725 1.20067 1.21193 1.19992 1.88022 1.73376 1.24340 1.42921 0.91920 0.91241 0.92007 0.91138 0.91217 0.91585 0.91791 0.91025 0.91194 0.90376 0.94882 0.81462 0.90886 0.94856 0.93629 0.94239 0.97665 0.97876 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 8.65 37.16 0.32 -1.57 16 2 C 0.09 0.97 3.91 -26.69 -0.10 0.87 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.15 -1.34 5.64 -26.59 -0.15 -1.49 16 5 C -0.12 -1.01 5.72 -26.55 -0.15 -1.16 16 6 C -0.15 -1.40 5.42 -26.59 -0.14 -1.54 16 7 C 0.09 1.06 2.59 -26.68 -0.07 0.99 16 8 H 0.07 0.84 6.34 -51.93 -0.33 0.51 16 9 C 0.07 0.87 5.42 -3.82 -0.02 0.85 16 10 N -0.69 -11.08 6.50 -113.77 -0.74 -11.82 16 11 C 0.06 1.04 6.11 -3.82 -0.02 1.02 16 12 C 0.06 1.22 6.28 37.16 0.23 1.46 16 13 O -0.40 -9.91 9.84 -35.23 -0.35 -10.26 16 14 C 0.20 5.59 5.69 36.01 0.20 5.79 16 15 C -0.51 -15.51 9.43 -34.44 -0.32 -15.83 16 16 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 19 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 O -0.37 -5.14 9.58 -35.23 -0.34 -5.48 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.61 4.97 -51.93 -0.26 0.35 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.53 6.62 -51.93 -0.34 0.18 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.36 6.87 7.68 -39.29 -0.30 6.56 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -31.77 332.39 -8.57 -40.34 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.54 Total: 0.75 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.33 Total: -9.07 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.00 Total: -38.53 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.68 Total: -15.74 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.77 -8.57 -40.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688920876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.975 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds